Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 112.84930 * 2 1 4 4 C 1.34781 * 119.99746 * 65.49587 * 3 2 1 5 5 S 1.71200 * 120.00244 * 4.54681 * 4 3 2 6 6 N 1.34780 * 119.99875 * 184.54625 * 4 3 2 7 7 C 1.46931 * 120.62833 * 354.91570 * 6 4 3 8 8 C 1.53190 * 108.77292 * 126.38901 * 7 6 4 9 9 C 1.53044 * 109.31466 * 54.63445 * 8 7 6 10 10 C 1.53042 * 109.53447 * 298.63636 * 9 8 7 11 11 H 1.08993 * 109.50145 * 301.37543 * 10 9 8 12 12 C 1.50709 * 109.49468 * 181.31237 * 10 9 8 13 13 H 1.07998 * 119.99768 * 0.06663 * 12 10 9 14 14 C 1.37870 * 119.99890 * 180.33846 * 12 10 9 15 15 N 1.31516 * 119.99787 * 179.72402 * 14 12 10 16 16 Si 1.86798 * 120.00270 * 359.72724 * 14 12 10 17 17 H 1.48502 * 109.47135 * 89.99921 * 16 14 12 18 18 H 1.48504 * 109.47385 * 209.99938 * 16 14 12 19 19 H 1.48505 * 109.47018 * 329.99991 * 16 14 12 20 20 C 1.46925 * 120.60431 * 174.89360 * 6 4 3 21 21 C 1.53781 * 113.61225 * 131.19407 * 2 1 3 22 22 C 1.53949 * 87.01945 * 89.23154 * 21 2 1 23 23 C 1.53779 * 113.61557 * 228.80287 * 2 1 3 24 24 H 1.09002 * 109.46659 * 64.25205 * 1 2 3 25 25 H 1.08992 * 109.47050 * 184.25300 * 1 2 3 26 26 H 1.09005 * 109.47272 * 304.25583 * 1 2 3 27 27 H 0.96998 * 120.00061 * 245.49041 * 3 2 1 28 28 H 1.09000 * 109.58704 * 6.60867 * 7 6 4 29 29 H 1.08994 * 109.58630 * 246.18049 * 7 6 4 30 30 H 1.09003 * 109.49737 * 294.68812 * 8 7 6 31 31 H 1.08997 * 109.50091 * 174.58474 * 8 7 6 32 32 H 1.08995 * 109.46171 * 178.61132 * 9 8 7 33 33 H 1.08995 * 109.44623 * 58.64352 * 9 8 7 34 34 H 0.96999 * 119.99830 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.56122 * 113.80775 * 20 6 4 36 36 H 1.08996 * 109.61831 * 353.38358 * 20 6 4 37 37 H 1.08997 * 113.61677 * 203.75030 * 21 2 1 38 38 H 1.09003 * 113.61593 * 334.65486 * 21 2 1 39 39 H 1.09000 * 113.53919 * 270.81376 * 22 21 2 40 40 H 1.09001 * 113.74738 * 139.93896 * 22 21 2 41 41 H 1.08994 * 113.61255 * 25.35076 * 23 2 1 42 42 H 1.09001 * 113.61031 * 156.25585 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3501 0.0000 4 6 1.9144 2.1591 1.0621 5 16 1.1164 1.5708 2.4579 6 7 2.3582 3.4312 1.0255 7 6 3.1416 3.9180 -0.1184 8 6 2.4773 5.1845 -0.6674 9 6 2.3169 6.2030 0.4636 10 6 1.4158 5.6189 1.5541 11 1 0.4455 5.3654 1.1272 12 6 1.2323 6.6346 2.6523 13 1 1.7094 7.6007 2.5795 14 6 0.4598 6.3284 3.7524 15 7 0.3040 7.2128 4.7132 16 14 -0.3656 4.6574 3.8783 17 1 0.5455 3.7056 4.5633 18 1 -1.6244 4.7843 4.6558 19 1 -0.6741 4.1538 2.5157 20 6 2.0672 4.3570 2.1286 21 6 2.1460 -0.9280 1.0603 22 6 2.0950 -2.0419 -0.0012 23 6 2.1460 -0.9280 -1.0602 24 1 -0.3633 0.4465 -0.9257 25 1 -0.3633 -1.0248 0.0762 26 1 -0.3634 0.5785 0.8494 27 1 2.6084 1.6617 -0.7643 28 1 3.1683 3.1535 -0.8948 29 1 4.1564 4.1486 0.2054 30 1 1.4972 4.9345 -1.0735 31 1 3.1000 5.6100 -1.4544 32 1 1.8669 7.1145 0.0703 33 1 3.2949 6.4336 0.8857 34 1 -0.2398 6.9975 5.4871 35 1 2.9946 4.6231 2.6360 36 1 1.3853 3.8826 2.8342 37 1 3.1584 -0.6477 1.3508 38 1 1.4938 -1.1079 1.9150 39 1 1.1595 -2.6013 -0.0006 40 1 2.9738 -2.6868 -0.0032 41 1 1.4940 -1.1079 -1.9149 42 1 3.1586 -0.6477 -1.3505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = 43.052088 kcal Electronic energy + Delta-G solvation = -21292.181465 eV Core-core repulsion = 18399.134005 eV Total energy + Delta-G solvation = -2893.047460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36173 -39.00815 -35.61609 -33.02300 -32.32261 -30.73342 -28.91033 -26.39265 -25.70474 -25.20182 -23.26394 -22.87185 -21.02933 -19.53897 -19.04537 -17.96229 -17.08290 -16.69158 -15.60252 -15.17393 -14.71709 -14.51373 -14.16706 -14.04654 -13.61685 -13.27421 -13.12953 -12.80564 -12.48301 -12.42692 -12.34297 -11.87479 -11.57073 -11.30198 -11.16051 -11.08470 -10.76708 -10.71472 -10.62337 -10.32693 -10.20794 -10.09147 -9.74077 -9.35221 -9.13808 -8.61107 -8.42405 -7.22634 -6.76749 -6.05002 -4.13250 1.79374 2.31751 2.98621 3.41009 3.56358 3.65990 3.80819 4.22637 4.43575 4.52112 4.65508 4.71295 4.76724 5.00185 5.16056 5.23585 5.32077 5.39964 5.50614 5.54494 5.65519 5.68266 5.72619 5.81726 5.92424 5.92951 6.01061 6.15678 6.21135 6.28433 6.38154 6.44783 6.49553 6.53720 6.58776 6.83933 7.04211 7.13897 7.35126 7.56598 7.69879 8.46128 8.91632 9.52311 11.02371 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.006389 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.710937 B = 4381.740026 C = 5283.527280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 N -0.688 5.688 4 C 0.566 3.434 5 S -0.662 6.662 6 N -0.557 5.557 7 C 0.097 3.903 8 C -0.134 4.134 9 C -0.104 4.104 10 C 0.009 3.991 11 H 0.032 0.968 12 C -0.523 4.523 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.875 3.125 17 H -0.252 1.252 18 H -0.301 1.301 19 H -0.258 1.258 20 C 0.089 3.911 21 C -0.120 4.120 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.390 0.610 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -14.316 -15.115 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 N -0.323 5.323 4 C 0.206 3.794 5 S -0.532 6.532 6 N -0.264 5.264 7 C -0.028 4.028 8 C -0.173 4.173 9 C -0.141 4.141 10 C -0.011 4.011 11 H 0.050 0.950 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.531 5.531 16 Si 0.703 3.297 17 H -0.178 1.178 18 H -0.228 1.228 19 H -0.183 1.183 20 C -0.032 4.032 21 C -0.159 4.159 22 C -0.181 4.181 23 C -0.178 4.178 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.229 0.771 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.688 -14.605 -14.040 21.042 hybrid contribution 0.296 -0.295 -1.002 1.085 sum 5.984 -14.900 -15.042 22.002 Atomic orbital electron populations 1.22079 0.91930 1.03295 1.03955 1.21920 0.94619 0.77891 0.97937 1.45259 1.54681 1.15305 1.17023 1.22279 0.83863 0.82959 0.90300 1.93234 1.58149 1.79495 1.22327 1.47934 1.48927 1.07649 1.21874 1.21948 0.95925 0.97040 0.87925 1.21988 1.00699 0.95370 0.99214 1.21501 1.00653 0.97160 0.94815 1.19492 0.94504 0.91960 0.95107 0.95045 1.20846 1.31883 1.00470 1.02843 0.90514 1.25099 0.95363 0.97289 0.95212 1.69901 1.39124 1.35013 1.09015 0.87066 0.79289 0.83261 0.80058 1.17755 1.22849 1.18304 1.23442 1.02628 0.89281 0.87824 1.23273 1.01697 0.93360 0.97578 1.22845 1.02369 0.96254 0.96623 1.23307 1.01075 0.96257 0.97113 0.93135 0.91342 0.88197 0.77063 0.91422 0.90099 0.91788 0.91080 0.91769 0.92285 0.92448 0.90739 0.86499 0.90290 0.89021 0.89786 0.91119 0.90688 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.99 37.16 0.33 -1.64 16 2 C 0.16 1.92 1.07 -131.00 -0.14 1.78 16 3 N -0.69 -8.97 5.18 -48.54 -0.25 -9.23 16 4 C 0.57 9.96 7.43 -86.91 -0.65 9.32 16 5 S -0.66 -14.46 22.62 -107.50 -2.43 -16.89 16 6 N -0.56 -9.76 2.97 -174.79 -0.52 -10.28 16 7 C 0.10 1.24 6.43 -3.71 -0.02 1.22 16 8 C -0.13 -1.80 6.08 -26.61 -0.16 -1.96 16 9 C -0.10 -1.84 5.11 -26.69 -0.14 -1.98 16 10 C 0.01 0.21 1.84 -91.65 -0.17 0.04 16 11 H 0.03 0.77 7.21 -51.93 -0.37 0.39 16 12 C -0.52 -14.37 9.15 -34.44 -0.32 -14.68 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 15 N -0.89 -27.55 13.96 55.43 0.77 -26.77 16 16 Si 0.87 23.50 23.49 -169.99 -3.99 19.51 16 17 H -0.25 -6.91 6.91 56.52 0.39 -6.51 16 18 H -0.30 -8.21 7.11 56.52 0.40 -7.80 16 19 H -0.26 -6.93 6.54 56.52 0.37 -6.56 16 20 C 0.09 1.93 4.98 -3.71 -0.02 1.91 16 21 C -0.12 -1.46 5.91 -25.83 -0.15 -1.61 16 22 C -0.14 -1.25 7.74 -25.83 -0.20 -1.45 16 23 C -0.14 -1.18 7.39 -25.92 -0.19 -1.37 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 26 H 0.10 1.67 5.80 -51.90 -0.30 1.37 16 27 H 0.39 3.96 6.15 -40.82 -0.25 3.71 16 28 H 0.07 0.64 5.56 -51.93 -0.29 0.35 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.12 2.88 1.44 -50.52 -0.07 2.81 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.31 7.59 -51.93 -0.39 0.92 16 39 H 0.08 0.68 7.61 -51.93 -0.40 0.29 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -33.31 320.81 -10.21 -43.51 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.70 Total: 3.68 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.92 Total: -8.36 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.00 Total: -46.28 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -3.99 Total: 19.51 kcal Atomic # 16 Polarization: -14.46 SS G_CDS: -2.43 Total: -16.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.31 -10.21 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.565 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds