Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 112.84920 * 2 1 4 4 C 1.34779 * 119.99973 * 65.87972 * 3 2 1 5 5 S 1.71198 * 120.00281 * 4.62082 * 4 3 2 6 6 N 1.34784 * 119.99979 * 184.62419 * 4 3 2 7 7 C 1.46925 * 120.63104 * 174.58790 * 6 4 3 8 8 C 1.53191 * 108.77457 * 233.88356 * 7 6 4 9 9 C 1.53038 * 109.31092 * 305.36310 * 8 7 6 10 10 C 1.53039 * 109.53894 * 61.36573 * 9 8 7 11 11 H 1.08999 * 109.49658 * 58.58987 * 10 9 8 12 12 C 1.50706 * 109.49926 * 178.68615 * 10 9 8 13 13 H 1.07999 * 119.99984 * 34.89349 * 12 10 9 14 14 C 1.37879 * 119.99944 * 214.90578 * 12 10 9 15 15 N 1.31511 * 119.99798 * 184.66092 * 14 12 10 16 16 Si 1.86803 * 119.99954 * 4.65451 * 14 12 10 17 17 H 1.48502 * 109.46850 * 84.80161 * 16 14 12 18 18 H 1.48491 * 109.46939 * 204.80230 * 16 14 12 19 19 H 1.48496 * 109.47074 * 324.80468 * 16 14 12 20 20 C 1.46924 * 120.63006 * 354.86469 * 6 4 3 21 21 C 1.53782 * 113.61322 * 131.19503 * 2 1 3 22 22 C 1.53954 * 87.01796 * 89.23076 * 21 2 1 23 23 C 1.53780 * 113.61689 * 228.80379 * 2 1 3 24 24 H 1.08999 * 109.46644 * 65.40541 * 1 2 3 25 25 H 1.08998 * 109.47183 * 185.40374 * 1 2 3 26 26 H 1.09001 * 109.47270 * 305.40734 * 1 2 3 27 27 H 0.97001 * 120.00193 * 245.87091 * 3 2 1 28 28 H 1.09003 * 109.58704 * 353.67099 * 7 6 4 29 29 H 1.08993 * 109.58813 * 114.09006 * 7 6 4 30 30 H 1.08999 * 109.49743 * 185.41339 * 8 7 6 31 31 H 1.08998 * 109.49971 * 65.31564 * 8 7 6 32 32 H 1.09006 * 109.46297 * 301.34458 * 9 8 7 33 33 H 1.08994 * 109.44951 * 181.38160 * 9 8 7 34 34 H 0.97002 * 119.99419 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.58613 * 245.90809 * 20 6 4 36 36 H 1.09005 * 109.58332 * 6.18884 * 20 6 4 37 37 H 1.08999 * 113.61686 * 203.74951 * 21 2 1 38 38 H 1.08998 * 113.61577 * 334.65056 * 21 2 1 39 39 H 1.09004 * 113.53927 * 270.80710 * 22 21 2 40 40 H 1.08996 * 113.74158 * 139.94573 * 22 21 2 41 41 H 1.08999 * 113.61432 * 25.34572 * 23 2 1 42 42 H 1.08993 * 113.61475 * 156.25515 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.9210 2.1562 1.0653 5 16 1.1333 1.5639 2.4651 6 7 2.3632 3.4289 1.0286 7 6 2.0736 4.3542 2.1325 8 6 1.4128 5.6124 1.5608 9 6 2.3060 6.2002 0.4659 10 6 2.4662 5.1821 -0.6654 11 1 1.4854 4.9273 -1.0671 12 6 3.3194 5.7739 -1.7577 13 1 4.1322 6.4395 -1.5072 14 6 3.0622 5.4658 -3.0768 15 7 3.8614 5.9077 -4.0231 16 14 1.5787 4.4205 -3.5196 17 1 0.3782 5.2874 -3.6319 18 1 1.8217 3.7410 -4.8174 19 1 1.3569 3.4025 -2.4616 20 6 3.1389 3.9191 -0.1189 21 6 2.1460 -0.9280 1.0603 22 6 2.0950 -2.0419 -0.0012 23 6 2.1461 -0.9280 -1.0602 24 1 -0.3632 0.4277 -0.9344 25 1 -0.3633 -1.0231 0.0968 26 1 -0.3634 0.5954 0.8376 27 1 2.6037 1.6636 -0.7666 28 1 1.3976 3.8766 2.8418 29 1 3.0019 4.6252 2.6352 30 1 1.2801 6.3467 2.3553 31 1 0.4419 5.3535 1.1382 32 1 3.2849 6.4360 0.8835 33 1 1.8497 7.1093 0.0744 34 1 3.6806 5.6906 -4.9510 35 1 4.1541 4.1546 0.2002 36 1 3.1679 3.1533 -0.8942 37 1 3.1585 -0.6477 1.3507 38 1 1.4939 -1.1079 1.9150 39 1 1.1595 -2.6014 -0.0006 40 1 2.9737 -2.6868 -0.0032 41 1 1.4940 -1.1080 -1.9149 42 1 3.1586 -0.6477 -1.3505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = 29.309303 kcal Electronic energy + Delta-G solvation = -21291.371934 eV Core-core repulsion = 18397.728542 eV Total energy + Delta-G solvation = -2893.643392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27226 -38.93345 -35.51592 -33.42406 -31.98494 -30.80985 -28.82801 -26.37609 -25.66409 -25.42347 -23.46789 -21.91797 -21.53310 -19.34442 -19.06742 -17.83569 -17.08545 -16.98309 -15.55011 -15.07867 -14.84422 -14.29004 -14.18361 -13.98924 -13.55882 -13.38987 -13.04395 -12.75477 -12.61585 -12.35930 -12.32549 -11.82536 -11.48649 -11.38285 -11.20729 -11.10379 -11.01174 -10.81584 -10.68212 -10.53596 -10.25263 -10.17273 -9.95957 -9.62743 -9.40175 -8.84485 -8.46350 -7.32539 -6.93107 -6.36602 -4.38917 1.82067 2.31093 2.98220 3.03195 3.13386 3.16738 3.57217 4.13226 4.34256 4.53520 4.76331 4.83159 4.91132 5.22288 5.33472 5.35773 5.44772 5.54197 5.63178 5.68240 5.74239 5.76646 5.77493 5.88366 5.94826 6.04618 6.10488 6.14113 6.22565 6.26729 6.31188 6.40444 6.51261 6.52515 6.64504 6.77675 6.97727 7.02392 7.21625 7.43780 7.61991 8.22349 8.69838 9.24525 10.75641 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.007127 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.515836 B = 3927.789689 C = 5130.205655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.682 5.682 4 C 0.574 3.426 5 S -0.689 6.689 6 N -0.559 5.559 7 C 0.105 3.895 8 C -0.136 4.136 9 C -0.107 4.107 10 C 0.009 3.991 11 H 0.036 0.964 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.271 1.271 20 C 0.096 3.904 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.143 4.143 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.398 0.602 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -10.167 6.214 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.315 5.315 4 C 0.212 3.788 5 S -0.560 6.560 6 N -0.265 5.265 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.145 4.145 10 C -0.011 4.011 11 H 0.055 0.945 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.128 4.128 15 N -0.524 5.524 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.028 4.028 21 C -0.156 4.156 22 C -0.180 4.180 23 C -0.181 4.181 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.239 0.761 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.777 -10.498 6.857 13.095 hybrid contribution 0.058 0.043 -1.775 1.777 sum -3.719 -10.455 5.081 12.205 Atomic orbital electron populations 1.22047 0.91969 1.03293 1.03701 1.21962 0.94623 0.77944 0.98124 1.45340 1.54070 1.15233 1.16848 1.22101 0.83441 0.83094 0.90153 1.92953 1.60516 1.80140 1.22377 1.47781 1.49658 1.07114 1.21989 1.22190 1.02007 0.89154 0.88448 1.22013 0.99760 0.96208 0.99443 1.21610 0.98632 0.99225 0.95021 1.19444 0.96484 0.90580 0.94591 0.94550 1.20889 1.16438 1.29179 0.89048 0.90333 1.25115 0.95978 0.95226 0.96520 1.69887 1.36779 1.45043 1.00701 0.86888 0.83881 0.81063 0.77685 1.19846 1.21279 1.19660 1.22905 0.95915 0.98813 0.85151 1.23250 1.01614 0.93359 0.97356 1.22842 1.02325 0.96242 0.96634 1.23340 1.01496 0.96072 0.97172 0.93117 0.91310 0.88408 0.76137 0.86337 0.91013 0.90952 0.91990 0.92495 0.91797 0.92250 0.90264 0.91671 0.90290 0.89102 0.89832 0.91060 0.90600 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.99 37.16 0.33 -1.72 16 2 C 0.16 2.15 1.07 -131.01 -0.14 2.01 16 3 N -0.68 -10.65 5.18 -48.54 -0.25 -10.90 16 4 C 0.57 9.99 7.42 -86.91 -0.65 9.34 16 5 S -0.69 -12.95 23.43 -107.50 -2.52 -15.47 16 6 N -0.56 -9.57 2.97 -174.79 -0.52 -10.09 16 7 C 0.10 1.63 6.30 -3.71 -0.02 1.61 16 8 C -0.14 -2.06 6.08 -26.61 -0.16 -2.22 16 9 C -0.11 -1.90 5.15 -26.69 -0.14 -2.03 16 10 C 0.01 0.19 1.91 -91.65 -0.17 0.01 16 11 H 0.04 0.79 5.31 -51.93 -0.28 0.52 16 12 C -0.52 -12.85 8.87 -34.44 -0.31 -13.15 16 13 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 14 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.89 -24.91 13.96 55.43 0.77 -24.13 16 16 Si 0.88 19.76 26.98 -169.99 -4.59 15.18 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -5.78 6.83 56.52 0.39 -5.39 16 20 C 0.10 1.75 5.70 -3.71 -0.02 1.73 16 21 C -0.12 -1.49 5.88 -25.83 -0.15 -1.64 16 22 C -0.14 -1.42 7.74 -25.83 -0.20 -1.62 16 23 C -0.14 -1.57 7.39 -25.92 -0.19 -1.76 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.78 7.32 -51.93 -0.38 0.40 16 26 H 0.10 1.58 5.85 -51.93 -0.30 1.28 16 27 H 0.40 6.13 6.15 -40.82 -0.25 5.88 16 28 H 0.12 1.93 6.00 -50.54 -0.30 1.63 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.19 5.56 -51.93 -0.29 0.90 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.28 7.57 -51.93 -0.39 0.89 16 39 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -28.23 328.77 -10.88 -39.11 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.81 Total: 8.94 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.92 Total: -7.59 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.00 Total: -45.12 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.59 Total: 15.18 kcal Atomic # 16 Polarization: -12.95 SS G_CDS: -2.52 Total: -15.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.23 -10.88 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.416 kcal (2) G-P(sol) polarization free energy of solvation -28.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds