Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.20826 * 120.00269 * 359.97438 * 10 9 8 12 12 O 1.34229 * 119.99763 * 179.97438 * 10 9 8 13 13 C 1.45199 * 116.99979 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47153 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99921 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00091 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47441 * 90.00099 * 19 17 15 21 21 H 1.48507 * 109.47042 * 210.00295 * 19 17 15 22 22 H 1.48500 * 109.47139 * 329.99765 * 19 17 15 23 23 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 34 34 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 35 35 H 1.08999 * 109.47262 * 300.00684 * 13 12 10 36 36 H 1.09002 * 109.46821 * 60.00470 * 13 12 10 37 37 H 1.08998 * 109.46740 * 299.99946 * 14 13 12 38 38 H 1.09002 * 109.47280 * 60.00254 * 14 13 12 39 39 H 0.96995 * 120.00095 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3076 0.1569 -4.4101 12 8 6.0408 -1.0223 -5.1090 13 6 6.3785 0.0668 -6.0080 14 6 7.6360 -0.2970 -6.8001 15 6 7.9868 0.8337 -7.7327 16 1 7.3739 1.7225 -7.7582 17 6 9.0902 0.7333 -8.5533 18 7 9.8363 -0.3493 -8.5225 19 14 9.5247 2.1344 -9.7098 20 1 10.4344 3.0829 -9.0185 21 1 10.2001 1.5900 -10.9151 22 1 8.2848 2.8440 -10.1153 23 7 3.2573 -0.8636 -1.5060 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 5.3468 -2.1309 -2.6676 34 1 4.3358 -2.8636 -3.9362 35 1 5.5520 0.2382 -6.6977 36 1 6.5624 0.9719 -5.4292 37 1 8.4626 -0.4686 -6.1106 38 1 7.4518 -1.2020 -7.3789 39 1 10.6124 -0.4201 -9.1001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849865282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = 0.751397 kcal Electronic energy + Delta-G solvation = -21572.256696 eV Core-core repulsion = 18131.081726 eV Total energy + Delta-G solvation = -3441.174970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.47377 -41.50542 -38.68918 -37.80344 -35.46062 -34.78208 -34.28470 -32.43428 -30.80275 -28.53227 -28.45684 -27.08621 -25.68875 -24.32560 -22.95729 -22.00224 -21.56926 -19.19058 -18.45070 -18.11865 -17.95312 -17.71707 -17.28215 -16.47611 -15.84878 -15.43001 -15.19866 -15.15776 -14.86579 -14.37014 -14.35604 -14.14383 -13.46819 -13.45608 -13.23698 -13.09626 -13.04807 -12.93363 -12.85786 -12.61162 -12.58845 -12.57845 -12.19060 -12.01212 -11.98922 -11.89703 -11.60833 -11.50702 -11.43993 -11.12451 -10.61122 -8.27248 -6.40241 0.14097 0.77461 0.93494 1.09244 1.40887 1.42530 1.53708 1.82166 2.39885 2.68881 3.07165 3.08241 3.50824 3.54777 3.64224 3.68311 4.14782 4.20113 4.24408 4.34170 4.42996 4.47639 4.52111 4.57033 4.60032 4.68418 4.71328 4.71899 4.72780 5.01295 5.10950 5.20976 5.24413 5.31078 5.47532 5.50650 5.73818 6.06480 6.63241 6.73388 7.25069 7.29326 8.85316 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.002714 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.875190 B =10313.380134 C =10583.053299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.157 4.157 4 C -0.152 4.152 5 N -0.117 5.117 6 N -0.074 5.074 7 N -0.304 5.304 8 C 0.166 3.834 9 C -0.008 4.008 10 C 0.465 3.535 11 O -0.546 6.546 12 O -0.355 6.355 13 C 0.092 3.908 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.062 0.938 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.299 5.299 24 H 0.060 0.940 25 H 0.126 0.874 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -1.325 22.954 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.215 4.215 4 C -0.210 4.210 5 N -0.033 5.033 6 N -0.066 5.066 7 N -0.174 5.174 8 C -0.117 4.117 9 C -0.047 4.047 10 C 0.308 3.692 11 O -0.437 6.437 12 O -0.271 6.271 13 C 0.018 3.982 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.564 5.564 19 Si 0.796 3.204 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.190 1.190 23 N -0.150 5.150 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.834 -1.009 22.980 29.105 hybrid contribution 0.917 0.650 -1.176 1.627 sum -16.917 -0.360 21.804 27.599 Atomic orbital electron populations 1.22145 0.88512 1.04642 1.05396 1.22064 0.97785 0.93091 0.78888 1.22277 1.02461 0.91757 1.05025 1.22256 1.02655 1.01045 0.95059 1.51023 1.00510 1.33509 1.18248 1.78810 1.22101 1.09624 0.96039 1.75773 1.01342 1.20131 1.20137 1.24931 0.95081 0.99465 0.92175 1.19603 0.92216 0.96684 0.96243 1.23867 0.77788 0.87863 0.79676 1.90650 1.54082 1.31587 1.67344 1.86490 1.43576 1.47097 1.49894 1.23184 0.98438 0.86783 0.89753 1.18987 0.90783 0.96966 0.93871 1.21367 1.12003 1.03073 1.22502 0.91946 1.25936 0.95702 0.98816 0.98710 1.70085 1.17224 1.29014 1.40100 0.85343 0.78632 0.78527 0.77921 1.19469 1.20277 1.18956 1.74513 1.04241 1.18806 1.17427 0.92082 0.85546 0.91006 0.85328 0.91874 0.93157 0.91715 0.91458 0.85607 0.81379 0.81525 0.92470 0.92280 0.97115 0.97210 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.91 71.98 0.57 -0.87 16 2 C 0.16 2.22 1.30 3.60 0.00 2.23 16 3 C -0.16 -1.98 8.66 71.98 0.62 -1.36 16 4 C -0.15 -1.34 8.67 71.98 0.62 -0.71 16 5 N -0.12 -2.80 3.73 -152.40 -0.57 -3.37 16 6 N -0.07 -2.10 12.24 37.02 0.45 -1.64 16 7 N -0.30 -9.63 12.50 -51.26 -0.64 -10.27 16 8 C 0.17 4.80 6.86 138.55 0.95 5.75 16 9 C -0.01 -0.19 6.44 29.10 0.19 0.00 16 10 C 0.46 16.34 7.95 71.24 0.57 16.90 16 11 O -0.55 -23.12 15.78 21.96 0.35 -22.77 16 12 O -0.35 -14.04 10.22 -51.41 -0.53 -14.57 16 13 C 0.09 4.19 5.40 71.98 0.39 4.57 16 14 C 0.03 1.68 5.35 29.85 0.16 1.84 16 15 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 N -0.30 -8.14 11.83 -51.20 -0.61 -8.74 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.13 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.17 3.05 8.14 -2.38 -0.02 3.03 16 35 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 36 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -77.01 341.72 6.58 -70.43 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.04 Total: 2.22 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 4.77 Total: -2.10 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.08 Total: -79.15 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.18 Total: -37.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -77.01 6.58 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849865282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.185 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds