Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46982 * 2 1 4 4 C 1.52996 * 109.46961 * 240.00237 * 2 1 3 5 5 O 1.42898 * 109.47290 * 119.99743 * 2 1 3 6 6 C 1.42904 * 113.99709 * 60.00334 * 5 2 1 7 7 H 1.09003 * 115.54607 * 4.41667 * 6 5 2 8 8 C 1.52996 * 117.49756 * 218.74433 * 6 5 2 9 9 C 1.52997 * 117.49876 * 150.08342 * 6 5 2 10 10 H 1.09004 * 117.49974 * 0.02562 * 9 6 5 11 11 C 1.50698 * 117.49980 * 214.99902 * 9 6 5 12 12 O 1.20824 * 120.00222 * 0.02562 * 11 9 6 13 13 O 1.34233 * 120.00048 * 180.02562 * 11 9 6 14 14 C 1.45201 * 117.00062 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47135 * 180.02562 * 14 13 11 16 16 C 1.50699 * 115.54783 * 65.10502 * 15 14 13 17 17 H 1.07994 * 120.00293 * 266.10992 * 16 15 14 18 18 C 1.37883 * 119.99952 * 86.11324 * 16 15 14 19 19 N 1.31515 * 119.99880 * 353.70661 * 18 16 15 20 20 Si 1.86794 * 120.00354 * 173.70414 * 18 16 15 21 21 H 1.48505 * 109.46996 * 60.00025 * 20 18 16 22 22 H 1.48497 * 109.47392 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47186 * 300.00419 * 20 18 16 24 24 C 1.52997 * 117.49874 * 279.43637 * 15 14 13 25 25 C 1.52997 * 117.49932 * 210.77424 * 15 14 13 26 26 H 1.09000 * 109.46926 * 299.99605 * 1 2 3 27 27 H 1.08996 * 109.47255 * 60.00039 * 1 2 3 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46905 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46911 * 299.99937 * 3 2 1 31 31 H 1.08993 * 109.47075 * 60.00011 * 3 2 1 32 32 H 1.08999 * 109.47227 * 299.99774 * 4 2 1 33 33 H 1.09006 * 109.47553 * 59.99682 * 4 2 1 34 34 H 1.09004 * 109.47383 * 179.97438 * 4 2 1 35 35 H 1.09006 * 117.50109 * 359.97438 * 8 6 5 36 36 H 1.09008 * 117.49844 * 144.99493 * 8 6 5 37 37 H 1.09002 * 109.47077 * 300.00341 * 14 13 11 38 38 H 1.09000 * 109.47077 * 59.99720 * 14 13 11 39 39 H 0.97000 * 120.00181 * 180.02562 * 19 18 16 40 40 H 1.08994 * 117.50055 * 0.02562 * 24 15 14 41 41 H 1.09002 * 117.49380 * 145.02164 * 24 15 14 42 42 H 1.08992 * 117.49944 * 214.97908 * 25 15 14 43 43 H 1.08996 * 117.49608 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1668 6 6 1.5848 -2.0355 1.2645 7 1 1.0214 -2.4154 0.4122 8 6 1.2081 -2.5606 2.6512 9 6 2.5127 -3.0120 1.9899 10 1 3.4447 -2.6155 2.3930 11 6 2.5777 -4.4255 1.4715 12 8 1.9121 -4.7501 0.5168 13 8 3.3750 -5.3240 2.0705 14 6 3.3878 -6.6664 1.5172 15 6 4.3470 -7.5423 2.3257 16 6 3.9515 -7.7875 3.7591 17 1 4.3360 -7.1506 4.5419 18 6 3.0988 -8.8251 4.0711 19 7 2.5331 -9.5228 3.1106 20 14 2.7471 -9.2399 5.8582 21 1 2.1400 -8.0624 6.5294 22 1 1.8058 -10.3865 5.9242 23 1 4.0154 -9.5998 6.5417 24 6 5.8406 -7.4277 2.0147 25 6 5.0627 -8.6747 1.5868 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 1.2823 -1.8674 3.4892 36 1 0.3968 -3.2861 2.7114 37 1 2.3838 -7.0883 1.5643 38 1 3.7175 -6.6284 0.4790 39 1 1.9329 -10.2526 3.3300 40 1 6.1400 -6.7281 1.2344 41 1 6.5372 -7.5301 2.8468 42 1 5.2480 -9.5969 2.1374 43 1 4.8506 -8.7954 0.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850106787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = -87.940557 kcal Electronic energy + Delta-G solvation = -22410.084065 eV Core-core repulsion = 19036.310715 eV Total energy + Delta-G solvation = -3373.773349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16050 -39.11130 -36.98970 -35.89540 -35.08444 -32.70543 -31.95784 -27.76138 -27.56838 -27.23390 -25.42929 -24.02144 -22.41496 -21.17632 -20.15457 -19.80548 -19.25079 -17.54267 -16.71047 -16.23146 -15.75474 -15.62427 -15.14392 -15.03146 -14.58346 -13.95779 -13.80764 -13.33398 -13.16128 -12.89160 -12.66348 -12.41197 -12.20440 -12.11015 -12.03604 -11.95803 -11.84250 -11.58963 -11.06199 -10.96775 -10.87883 -10.80895 -10.55505 -10.44858 -10.29143 -10.02574 -9.86251 -9.60617 -9.27948 -8.83198 -8.46448 -8.21061 -6.06960 -4.12238 2.55544 2.92643 3.30747 3.35249 3.38199 3.59610 3.90635 4.39351 4.54758 4.61150 4.73891 4.77622 4.85192 5.08324 5.15139 5.22869 5.28718 5.32191 5.35115 5.48978 5.50672 5.59973 5.60915 5.70179 5.76447 5.85881 5.97673 5.99912 6.02687 6.07679 6.24002 6.32682 6.52092 6.65339 6.73451 7.02734 7.12054 7.23667 7.36211 7.46990 7.86443 8.35374 8.44828 8.89456 9.53558 11.02403 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.003578 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.028617 B = 7823.482988 C = 8341.338465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.342 6.342 6 C 0.051 3.949 7 H 0.127 0.873 8 C -0.152 4.152 9 C -0.165 4.165 10 H 0.137 0.863 11 C 0.486 3.514 12 O -0.526 6.526 13 O -0.330 6.330 14 C 0.115 3.885 15 C 0.037 3.963 16 C -0.491 4.491 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.205 4.205 25 C -0.144 4.144 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 17.816 -5.987 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.068 3.932 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.260 6.260 6 C -0.008 4.008 7 H 0.144 0.856 8 C -0.189 4.189 9 C -0.185 4.185 10 H 0.155 0.845 11 C 0.330 3.670 12 O -0.417 6.417 13 O -0.245 6.245 14 C 0.042 3.958 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.243 4.243 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.937 17.598 -6.162 18.875 hybrid contribution -0.362 -0.651 0.649 0.988 sum -3.299 16.947 -5.513 18.124 Atomic orbital electron populations 1.22474 0.95321 1.02965 1.02744 1.21585 0.93413 0.92981 0.85244 1.21762 1.02075 0.93098 1.02489 1.22496 1.02443 1.01402 0.97480 1.87899 1.73535 1.21573 1.43037 1.22620 0.98976 0.82252 0.96910 0.85571 1.23505 0.95948 1.02394 0.97033 1.22194 0.99039 0.90397 1.06861 0.84467 1.22369 0.76875 0.87139 0.80657 1.90593 1.42965 1.80618 1.27552 1.86517 1.59202 1.22499 1.56262 1.22939 1.02404 0.76327 0.94093 1.18766 0.87251 0.94815 0.95490 1.20362 1.28509 1.13901 0.90044 0.91875 1.25017 0.95182 0.95942 0.97301 1.69992 1.29392 1.20780 1.31698 0.86640 0.78176 0.77966 0.85150 1.20096 1.21283 1.20111 1.23015 0.97669 1.01362 1.02229 1.22534 1.04354 0.93307 0.97954 0.91613 0.91525 0.91865 0.91701 0.91026 0.91751 0.91610 0.91503 0.91589 0.86809 0.87274 0.90606 0.94294 0.92856 0.91550 0.90030 0.89380 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.38 37.16 0.31 -1.21 16 2 C 0.11 1.05 1.11 -90.62 -0.10 0.94 16 3 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 4 C -0.18 -1.76 8.38 37.16 0.31 -1.45 16 5 O -0.34 -4.24 10.24 -35.23 -0.36 -4.61 16 6 C 0.05 0.67 4.47 -26.73 -0.12 0.55 16 7 H 0.13 1.70 5.16 -51.93 -0.27 1.43 16 8 C -0.15 -1.97 10.19 -26.70 -0.27 -2.24 16 9 C -0.17 -2.54 6.25 -91.74 -0.57 -3.12 16 10 H 0.14 1.96 8.14 -51.93 -0.42 1.54 16 11 C 0.49 9.61 7.74 36.00 0.28 9.89 16 12 O -0.53 -11.30 16.01 -18.75 -0.30 -11.60 16 13 O -0.33 -7.46 10.16 -39.26 -0.40 -7.86 16 14 C 0.12 2.79 5.29 37.16 0.20 2.99 16 15 C 0.04 0.94 1.62 -155.66 -0.25 0.68 16 16 C -0.49 -13.50 8.78 -34.44 -0.30 -13.80 16 17 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 18 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 19 N -0.88 -24.95 12.88 55.43 0.71 -24.24 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 25 C -0.14 -3.37 9.37 -26.69 -0.25 -3.62 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.11 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.08 2.01 8.13 -51.93 -0.42 1.59 16 38 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -30.07 360.64 -8.00 -38.07 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.26 Total: 2.82 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.81 Total: -14.14 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.71 Total: -24.24 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.06 Total: -24.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.07 -8.00 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850106787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.866 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds