Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46982 * 2 1 4 4 C 1.52996 * 109.46961 * 240.00237 * 2 1 3 5 5 O 1.42898 * 109.47290 * 119.99743 * 2 1 3 6 6 C 1.42904 * 113.99709 * 60.00334 * 5 2 1 7 7 H 1.09003 * 115.54607 * 4.41667 * 6 5 2 8 8 C 1.52996 * 117.49756 * 218.74433 * 6 5 2 9 9 C 1.52997 * 117.49876 * 150.08342 * 6 5 2 10 10 H 1.09004 * 117.49974 * 0.02562 * 9 6 5 11 11 C 1.50698 * 117.49980 * 214.99902 * 9 6 5 12 12 O 1.20824 * 120.00222 * 0.02562 * 11 9 6 13 13 O 1.34233 * 120.00048 * 180.02562 * 11 9 6 14 14 C 1.45201 * 117.00062 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47135 * 180.02562 * 14 13 11 16 16 C 1.50699 * 115.54783 * 65.10502 * 15 14 13 17 17 H 1.07994 * 120.00293 * 266.10992 * 16 15 14 18 18 C 1.37883 * 119.99952 * 86.11324 * 16 15 14 19 19 N 1.31515 * 119.99880 * 353.70661 * 18 16 15 20 20 Si 1.86794 * 120.00354 * 173.70414 * 18 16 15 21 21 H 1.48505 * 109.46996 * 60.00025 * 20 18 16 22 22 H 1.48497 * 109.47392 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47186 * 300.00419 * 20 18 16 24 24 C 1.52997 * 117.49874 * 279.43637 * 15 14 13 25 25 C 1.52997 * 117.49932 * 210.77424 * 15 14 13 26 26 H 1.09000 * 109.46926 * 299.99605 * 1 2 3 27 27 H 1.08996 * 109.47255 * 60.00039 * 1 2 3 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46905 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46911 * 299.99937 * 3 2 1 31 31 H 1.08993 * 109.47075 * 60.00011 * 3 2 1 32 32 H 1.08999 * 109.47227 * 299.99774 * 4 2 1 33 33 H 1.09006 * 109.47553 * 59.99682 * 4 2 1 34 34 H 1.09004 * 109.47383 * 179.97438 * 4 2 1 35 35 H 1.09006 * 117.50109 * 359.97438 * 8 6 5 36 36 H 1.09008 * 117.49844 * 144.99493 * 8 6 5 37 37 H 1.09002 * 109.47077 * 300.00341 * 14 13 11 38 38 H 1.09000 * 109.47077 * 59.99720 * 14 13 11 39 39 H 0.97000 * 120.00181 * 180.02562 * 19 18 16 40 40 H 1.08994 * 117.50055 * 0.02562 * 24 15 14 41 41 H 1.09002 * 117.49380 * 145.02164 * 24 15 14 42 42 H 1.08992 * 117.49944 * 214.97908 * 25 15 14 43 43 H 1.08996 * 117.49608 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1668 6 6 1.5848 -2.0355 1.2645 7 1 1.0214 -2.4154 0.4122 8 6 1.2081 -2.5606 2.6512 9 6 2.5127 -3.0120 1.9899 10 1 3.4447 -2.6155 2.3930 11 6 2.5777 -4.4255 1.4715 12 8 1.9121 -4.7501 0.5168 13 8 3.3750 -5.3240 2.0705 14 6 3.3878 -6.6664 1.5172 15 6 4.3470 -7.5423 2.3257 16 6 3.9515 -7.7875 3.7591 17 1 4.3360 -7.1506 4.5419 18 6 3.0988 -8.8251 4.0711 19 7 2.5331 -9.5228 3.1106 20 14 2.7471 -9.2399 5.8582 21 1 2.1400 -8.0624 6.5294 22 1 1.8058 -10.3865 5.9242 23 1 4.0154 -9.5998 6.5417 24 6 5.8406 -7.4277 2.0147 25 6 5.0627 -8.6747 1.5868 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 1.2823 -1.8674 3.4892 36 1 0.3968 -3.2861 2.7114 37 1 2.3838 -7.0883 1.5643 38 1 3.7175 -6.6284 0.4790 39 1 1.9329 -10.2526 3.3300 40 1 6.1400 -6.7281 1.2344 41 1 6.5372 -7.5301 2.8468 42 1 5.2480 -9.5969 2.1374 43 1 4.8506 -8.7954 0.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850106787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = -103.146310 kcal Electronic energy + Delta-G solvation = -22410.743436 eV Core-core repulsion = 19036.310715 eV Total energy + Delta-G solvation = -3374.432720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64509 -40.20684 -38.69193 -37.28301 -36.62466 -34.03693 -33.59627 -29.08717 -28.37930 -28.27516 -27.45514 -25.50903 -23.40154 -22.99831 -21.34151 -21.20171 -20.97229 -18.86613 -18.44519 -17.66110 -17.30218 -17.06005 -16.61377 -16.33742 -15.85850 -15.64412 -15.05785 -14.56287 -14.30412 -14.11300 -14.00260 -13.63835 -13.52854 -13.32241 -13.09368 -12.93122 -12.84545 -12.83174 -12.79646 -12.64217 -12.42002 -12.11504 -11.88391 -11.85151 -11.71406 -11.65915 -11.42640 -11.37320 -10.80593 -10.51298 -10.31126 -10.09546 -8.15079 -6.26714 1.04307 1.42479 1.43238 1.51223 1.56312 2.41564 2.48516 2.71725 3.13526 3.39687 3.53998 3.68202 3.84401 3.92989 3.94951 4.02355 4.10852 4.11268 4.31726 4.35896 4.43950 4.62827 4.63189 4.66978 4.73716 4.78325 4.81302 4.89582 4.92792 4.94596 4.95058 4.98339 5.15923 5.17485 5.32894 5.38324 5.42066 5.55689 5.64915 5.73246 6.20935 6.34039 6.76527 6.78451 7.42117 8.93639 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.003578 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.028617 B = 7823.482988 C = 8341.338465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.350 6.350 6 C 0.068 3.932 7 H 0.122 0.878 8 C -0.138 4.138 9 C -0.183 4.183 10 H 0.149 0.851 11 C 0.483 3.517 12 O -0.548 6.548 13 O -0.343 6.343 14 C 0.128 3.872 15 C 0.003 3.997 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.268 1.268 24 C -0.179 4.179 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 19.713 -5.721 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.269 6.269 6 C 0.009 3.991 7 H 0.139 0.861 8 C -0.175 4.175 9 C -0.203 4.203 10 H 0.166 0.834 11 C 0.328 3.672 12 O -0.440 6.440 13 O -0.258 6.258 14 C 0.054 3.946 15 C 0.003 3.997 16 C -0.546 4.546 17 H 0.073 0.927 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.216 4.216 25 C -0.181 4.181 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.939 19.515 -5.898 20.598 hybrid contribution -0.369 -1.158 0.499 1.314 sum -3.308 18.358 -5.399 19.419 Atomic orbital electron populations 1.22462 0.94273 1.02633 1.03923 1.21902 0.94378 0.93719 0.84201 1.21787 1.01823 0.91757 1.03751 1.22499 1.01965 1.00628 0.98650 1.87896 1.73895 1.20734 1.44379 1.22486 0.97246 0.82455 0.96927 0.86074 1.23646 0.93981 1.02089 0.97764 1.22292 1.00821 0.87928 1.09211 0.83363 1.23213 0.75687 0.88155 0.80125 1.90572 1.43690 1.81238 1.28535 1.86521 1.60273 1.22134 1.56912 1.22565 1.00260 0.77228 0.94526 1.18873 0.89355 0.96481 0.94990 1.20612 1.28752 1.14005 0.91194 0.92729 1.25731 0.94978 0.95842 1.01127 1.70099 1.29925 1.21158 1.33470 0.85688 0.78207 0.77727 0.80520 1.19728 1.20914 1.19326 1.23025 0.95633 1.00413 1.02561 1.22471 1.04580 0.92825 0.98267 0.91234 0.89596 0.92937 0.92149 0.88826 0.91450 0.93470 0.89317 0.92320 0.84436 0.87457 0.94029 0.93321 0.92931 0.89179 0.89551 0.91049 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.38 71.98 0.60 -2.04 16 2 C 0.10 1.71 1.11 -10.79 -0.01 1.70 16 3 C -0.13 -1.78 8.84 71.98 0.64 -1.15 16 4 C -0.18 -3.29 8.38 71.98 0.60 -2.68 16 5 O -0.35 -8.14 10.24 -148.98 -1.53 -9.67 16 6 C 0.07 1.72 4.47 30.59 0.14 1.86 16 7 H 0.12 3.24 5.16 -2.39 -0.01 3.23 16 8 C -0.14 -3.38 10.19 30.62 0.31 -3.07 16 9 C -0.18 -5.52 6.25 -11.52 -0.07 -5.59 16 10 H 0.15 4.09 8.14 -2.38 -0.02 4.07 16 11 C 0.48 19.30 7.74 71.24 0.55 19.85 16 12 O -0.55 -24.02 16.01 21.97 0.35 -23.67 16 13 O -0.34 -15.71 10.16 -51.44 -0.52 -16.24 16 14 C 0.13 6.29 5.29 71.98 0.38 6.68 16 15 C 0.00 0.17 1.62 -52.93 -0.09 0.09 16 16 C -0.51 -28.24 8.78 25.60 0.22 -28.01 16 17 H 0.05 3.04 7.82 -2.91 -0.02 3.01 16 18 C 0.02 1.31 5.38 84.66 0.46 1.76 16 19 N -0.91 -52.26 12.88 21.45 0.28 -51.99 16 20 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.18 -7.71 9.96 30.62 0.30 -7.40 16 25 C -0.14 -6.73 9.37 30.62 0.29 -6.44 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.90 6.72 -2.39 -0.02 0.89 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.03 6.53 -2.39 -0.02 1.01 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.04 2.29 8.13 -2.39 -0.02 2.27 16 38 H 0.05 2.24 8.09 -2.39 -0.02 2.22 16 39 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 42 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -64.67 360.64 5.90 -58.76 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.97 Total: 21.72 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.33 Total: -24.45 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.28 Total: -51.99 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.70 Total: -49.57 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.67 5.90 -58.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850106787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.381 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds