Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99750 * 2 1 4 4 H 1.48497 * 109.47202 * 239.99658 * 3 2 1 5 5 H 1.48498 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46625 * 119.99780 * 3 2 1 7 7 C 1.37874 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99603 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00129 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47150 * 180.02562 * 9 7 2 11 11 C 1.42893 * 113.99784 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46740 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47692 * 64.99935 * 12 11 10 14 14 C 1.34222 * 117.00336 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00301 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99905 * 179.97438 * 14 13 12 17 17 C 1.52951 * 109.41251 * 180.02562 * 16 14 13 18 18 C 1.53179 * 109.44734 * 176.90938 * 17 16 14 19 19 C 1.53147 * 108.88655 * 56.56620 * 18 17 16 20 20 C 1.52841 * 117.67569 * 91.49469 * 19 18 17 21 21 C 1.52806 * 117.74825 * 160.37823 * 19 18 17 22 22 C 1.53147 * 115.00654 * 306.06267 * 19 18 17 23 23 C 1.52934 * 109.41196 * 59.64853 * 16 14 13 24 24 H 0.96996 * 120.00370 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47095 * 59.99977 * 9 7 2 26 26 H 1.08994 * 109.46923 * 299.99969 * 9 7 2 27 27 H 1.09000 * 109.47580 * 60.00250 * 11 10 9 28 28 H 1.09001 * 109.47514 * 299.99517 * 11 10 9 29 29 H 1.09003 * 109.47310 * 304.99263 * 12 11 10 30 30 H 1.09009 * 109.47506 * 184.99996 * 12 11 10 31 31 H 1.09005 * 109.35412 * 299.82141 * 16 14 13 32 32 H 1.08998 * 109.47971 * 56.90627 * 17 16 14 33 33 H 1.09004 * 109.46635 * 296.89817 * 17 16 14 34 34 H 1.09001 * 109.56649 * 296.74231 * 18 17 16 35 35 H 1.08999 * 109.56825 * 176.39267 * 18 17 16 36 36 H 1.09002 * 117.50783 * 0.27023 * 20 19 18 37 37 H 1.09008 * 117.50386 * 215.22396 * 20 19 18 38 38 H 1.09001 * 117.50504 * 144.89350 * 21 19 18 39 39 H 1.09001 * 117.52712 * 359.83898 * 21 19 18 40 40 H 1.08996 * 109.57213 * 173.75440 * 22 19 18 41 41 H 1.08998 * 109.56916 * 294.11313 * 22 19 18 42 42 H 1.09005 * 109.47136 * 303.08157 * 23 16 14 43 43 H 1.08995 * 109.47675 * 63.09462 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3988 -5.8885 1.2432 14 6 4.3928 -6.7762 1.4034 15 8 4.6284 -7.5827 0.5351 16 6 5.2157 -6.7661 2.6659 17 6 6.2724 -7.8695 2.5927 18 6 7.1586 -7.8106 3.8407 19 6 6.2721 -7.9274 5.0841 20 6 6.0232 -9.3253 5.6497 21 6 6.9361 -8.3484 6.3943 22 6 5.1253 -6.9151 5.1589 23 6 4.3024 -7.0013 3.8698 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.9462 -4.9826 -0.8894 28 1 0.9442 -4.9824 0.8906 29 1 3.3224 -5.7955 -0.8394 30 1 2.1825 -6.9375 -0.0880 31 1 5.7085 -5.7992 2.7682 32 1 6.8866 -7.7261 1.7037 33 1 5.7805 -8.8409 2.5417 34 1 7.6954 -6.8622 3.8628 35 1 7.8713 -8.6351 3.8217 36 1 6.4943 -10.1658 5.1401 37 1 5.0426 -9.5265 6.0813 38 1 6.5562 -7.9071 7.3158 39 1 8.0078 -8.5467 6.3750 40 1 4.4898 -7.1458 6.0138 41 1 5.5323 -5.9095 5.2653 42 1 3.5202 -6.2423 3.8863 43 1 3.8486 -7.9894 3.7942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850267779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = -137.199373 kcal Electronic energy + Delta-G solvation = -22010.411939 eV Core-core repulsion = 18634.502567 eV Total energy + Delta-G solvation = -3375.909372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66835 -39.25758 -37.09769 -36.03925 -34.97565 -32.77193 -31.21286 -30.20739 -28.37125 -26.89021 -23.54312 -23.09736 -22.62604 -22.35173 -21.78336 -20.35295 -18.91830 -17.57279 -16.69707 -16.43818 -16.23891 -15.62077 -15.45317 -15.13363 -14.56653 -14.39119 -13.95588 -13.86318 -13.62430 -13.27448 -12.84904 -12.57793 -12.54791 -12.18678 -12.11589 -11.89821 -11.77170 -11.41502 -11.30447 -11.02605 -10.92965 -10.84212 -10.75101 -10.40478 -10.39936 -10.34781 -10.13141 -10.03378 -9.80667 -9.14555 -8.87404 -8.21499 -6.12223 -4.14072 2.32930 2.81883 3.31957 3.34453 3.38474 3.49385 4.26569 4.32190 4.39120 4.55521 4.62030 4.71955 4.74981 4.83660 4.91990 5.06504 5.17737 5.24220 5.24382 5.25418 5.37774 5.47055 5.51481 5.56687 5.62582 5.66126 5.71195 5.82710 5.85757 5.87435 5.91667 5.92486 5.97302 6.10759 6.15368 6.16690 6.65971 7.05132 7.39476 7.77418 7.91090 8.12266 8.52383 8.98269 9.50687 10.99312 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.003077 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.555962 B = 9097.576359 C = 9799.211937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.339 6.339 14 C 0.463 3.537 15 O -0.518 6.518 16 C -0.079 4.079 17 C -0.099 4.099 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.175 4.175 21 C -0.176 4.176 22 C -0.080 4.080 23 C -0.109 4.109 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -17.969 10.572 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.255 6.255 14 C 0.307 3.693 15 O -0.407 6.407 16 C -0.098 4.098 17 C -0.137 4.137 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.212 4.212 21 C -0.213 4.213 22 C -0.117 4.117 23 C -0.146 4.146 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.916 -18.029 10.282 23.451 hybrid contribution -0.054 0.768 -0.203 0.796 sum 10.862 -17.261 10.079 22.749 Atomic orbital electron populations 1.69949 1.06106 1.27320 1.50458 1.24948 0.94989 0.99441 0.95092 0.86381 0.79308 0.81829 0.78880 1.20009 1.21141 1.19952 1.21014 0.94070 0.89320 1.50990 0.91559 1.20227 0.88739 0.83492 0.95484 1.87916 1.35314 1.12614 1.95219 1.22314 0.93277 0.85475 1.00498 1.23201 0.93722 0.98673 0.84431 1.86600 1.43518 1.54077 1.41303 1.23742 0.79024 0.77772 0.88782 1.90625 1.67901 1.38371 1.43841 1.21055 0.95592 1.02688 0.90428 1.21406 0.96233 0.98054 0.98010 1.21157 0.96374 1.02372 0.91843 1.21546 0.99570 0.96769 0.94568 1.23027 1.01074 0.93030 1.04069 1.22985 0.98727 1.03981 0.95623 1.21147 0.94849 0.98483 0.97216 1.21507 0.97645 1.03065 0.92392 0.92564 0.97630 0.97508 0.92029 0.93225 0.90585 0.90553 0.87191 0.90831 0.91034 0.91071 0.91350 0.88964 0.88908 0.88851 0.88937 0.91246 0.90816 0.89902 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -15.27 9.43 -34.44 -0.32 -15.60 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.19 5.35 5.69 36.01 0.20 5.56 16 10 O -0.39 -9.55 10.30 -38.80 -0.40 -9.95 16 11 C 0.06 1.15 6.33 37.16 0.24 1.38 16 12 C 0.07 1.19 5.84 37.16 0.22 1.41 16 13 O -0.34 -5.73 10.02 -42.00 -0.42 -6.15 16 14 C 0.46 6.95 7.25 36.01 0.26 7.21 16 15 O -0.52 -8.74 15.70 -18.75 -0.29 -9.04 16 16 C -0.08 -0.89 2.54 -91.83 -0.23 -1.12 16 17 C -0.10 -0.99 4.52 -26.66 -0.12 -1.11 16 18 C -0.08 -0.65 5.67 -26.56 -0.15 -0.80 16 19 C -0.12 -0.99 1.97 -154.54 -0.31 -1.29 16 20 C -0.18 -1.29 9.93 -26.79 -0.27 -1.55 16 21 C -0.18 -1.24 9.99 -26.81 -0.27 -1.51 16 22 C -0.08 -0.67 5.67 -26.56 -0.15 -0.82 16 23 C -0.11 -1.08 5.16 -26.67 -0.14 -1.22 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.08 1.04 8.13 -51.92 -0.42 0.62 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -32.55 356.09 -8.73 -41.28 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -7.56 Total: -4.27 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.13 Total: -7.92 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.11 Total: -25.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.55 -8.73 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850267779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.924 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds