Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99870 * 2 1 4 4 C 1.50706 * 109.46982 * 269.99766 * 3 2 1 5 5 C 1.34945 * 125.48604 * 95.00215 * 4 3 2 6 6 N 1.36669 * 106.72864 * 179.73826 * 5 4 3 7 7 C 1.37569 * 126.88645 * 180.22833 * 6 5 4 8 8 H 1.08000 * 119.99994 * 354.18367 * 7 6 5 9 9 C 1.39003 * 119.99736 * 174.19071 * 7 6 5 10 10 N 1.31252 * 120.00480 * 5.87967 * 9 7 6 11 11 Si 1.86810 * 119.99690 * 185.88796 * 9 7 6 12 12 H 1.48500 * 109.47210 * 94.97552 * 11 9 7 13 13 H 1.48498 * 109.46749 * 214.97691 * 11 9 7 14 14 H 1.48495 * 109.46895 * 334.97523 * 11 9 7 15 15 N 1.40322 * 106.22336 * 0.26041 * 6 5 4 16 16 N 1.28756 * 108.03392 * 0.02562 * 15 6 5 17 17 C 1.34772 * 120.00347 * 179.97438 * 2 1 3 18 18 O 1.21514 * 120.00377 * 180.02562 * 17 2 1 19 19 O 1.34634 * 119.99788 * 0.02562 * 17 2 1 20 20 C 1.45198 * 117.00188 * 179.97438 * 19 17 2 21 21 C 1.52996 * 109.47470 * 59.99593 * 20 19 17 22 22 C 1.53001 * 109.47280 * 179.97438 * 20 19 17 23 23 C 1.53002 * 109.47316 * 299.99647 * 20 19 17 24 24 H 1.08997 * 109.47373 * 90.00080 * 1 2 3 25 25 H 1.08998 * 109.47115 * 210.00323 * 1 2 3 26 26 H 1.09005 * 109.47414 * 330.00000 * 1 2 3 27 27 H 1.08998 * 109.47202 * 150.00295 * 3 2 1 28 28 H 1.08996 * 109.47297 * 30.00001 * 3 2 1 29 29 H 1.08005 * 126.63630 * 0.02562 * 5 4 3 30 30 H 0.96996 * 119.99917 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.47053 * 59.99892 * 21 20 19 32 32 H 1.08993 * 109.47701 * 179.97438 * 21 20 19 33 33 H 1.09002 * 109.47310 * 300.00611 * 21 20 19 34 34 H 1.09003 * 109.47389 * 59.99598 * 22 20 19 35 35 H 1.09005 * 109.47388 * 179.97438 * 22 20 19 36 36 H 1.09004 * 109.47278 * 299.99887 * 22 20 19 37 37 H 1.09005 * 109.46781 * 59.99573 * 23 20 19 38 38 H 1.08989 * 109.47638 * 179.97438 * 23 20 19 39 39 H 1.08997 * 109.46864 * 300.00473 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 6 1.6764 2.5554 -2.1276 6 7 2.2564 2.6833 -3.3584 7 6 1.8114 3.4582 -4.4045 8 1 0.8654 3.9739 -4.3302 9 6 2.5793 3.5771 -5.5570 10 7 3.6707 2.8613 -5.6953 11 14 2.0579 4.7560 -6.9091 12 1 2.7597 6.0528 -6.7330 13 1 2.4089 4.1787 -8.2315 14 1 0.5907 4.9735 -6.8375 15 7 3.3965 1.8654 -3.3415 16 7 3.4683 1.3056 -2.1842 17 6 2.1389 -1.1671 0.0005 18 8 3.3540 -1.1671 0.0010 19 8 1.4657 -2.3331 0.0005 20 6 2.2565 -3.5508 0.0005 21 6 3.1393 -3.5858 1.2496 22 6 1.3245 -4.7642 0.0012 23 6 3.1392 -3.5858 -1.2488 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5138 29 1 0.7768 3.0451 -1.7850 30 1 4.2063 2.9441 -6.4998 31 1 2.5105 -3.5609 2.1397 32 1 3.7326 -4.5001 1.2499 33 1 3.8032 -2.7213 1.2497 34 1 0.6953 -4.7396 -0.8886 35 1 1.9182 -5.6784 0.0007 36 1 0.6960 -4.7392 0.8914 37 1 3.8031 -2.7213 -1.2488 38 1 3.7331 -4.4997 -1.2486 39 1 2.5103 -3.5609 -2.1387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864638550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = 13.412816 kcal Electronic energy + Delta-G solvation = -22749.394261 eV Core-core repulsion = 19308.768331 eV Total energy + Delta-G solvation = -3440.625930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45586 -39.97450 -37.26009 -35.10475 -34.11202 -33.63163 -31.32244 -30.01789 -27.35107 -27.19283 -26.89420 -25.86405 -24.90609 -21.61187 -21.26781 -19.73174 -18.99142 -17.58275 -17.37103 -16.38087 -15.89644 -15.53969 -15.00660 -14.59342 -14.22917 -14.08848 -13.65348 -13.37044 -13.23251 -13.03806 -12.54136 -12.44711 -12.19866 -12.04906 -12.00218 -11.75578 -11.68214 -11.49115 -11.36033 -11.22259 -11.17279 -11.05966 -10.61743 -10.09155 -9.95834 -9.67412 -9.55162 -9.13016 -8.68512 -8.31484 -7.44239 -6.81839 -4.62405 2.47841 2.83727 2.94951 3.01521 3.34465 3.37348 3.68885 4.01182 4.46191 4.66739 4.81057 4.85545 4.88372 5.04260 5.34793 5.50381 5.52722 5.62658 5.67253 5.75337 5.77702 5.85609 5.94316 6.01250 6.04165 6.07235 6.18415 6.29008 6.42759 6.61282 6.69537 6.77862 6.90550 6.98684 7.09377 7.75568 7.84923 7.90921 8.51947 8.84773 9.13022 10.15320 10.25391 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.004059 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.626563 B = 6897.131153 C = 7218.953540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.592 5.592 3 C 0.231 3.769 4 C -0.101 4.101 5 C -0.107 4.107 6 N -0.150 5.150 7 C -0.317 4.317 8 H 0.120 0.880 9 C 0.048 3.952 10 N -0.759 5.759 11 Si 0.942 3.058 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.261 1.261 15 N -0.093 5.093 16 N -0.299 5.299 17 C 0.649 3.351 18 O -0.551 6.551 19 O -0.369 6.369 20 C 0.136 3.864 21 C -0.181 4.181 22 C -0.138 4.138 23 C -0.184 4.184 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.282 0.718 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -7.399 9.574 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.332 5.332 3 C 0.108 3.892 4 C -0.249 4.249 5 C -0.263 4.263 6 N 0.080 4.920 7 C -0.454 4.454 8 H 0.138 0.862 9 C -0.172 4.172 10 N -0.385 5.385 11 Si 0.764 3.236 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.185 1.185 15 N -0.071 5.071 16 N -0.159 5.159 17 C 0.403 3.597 18 O -0.439 6.439 19 O -0.285 6.285 20 C 0.099 3.901 21 C -0.238 4.238 22 C -0.195 4.195 23 C -0.241 4.241 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.171 0.829 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.839 -8.113 8.631 13.207 hybrid contribution -1.301 1.005 -0.370 1.685 sum -7.141 -7.109 8.261 13.029 Atomic orbital electron populations 1.21664 0.79508 1.02411 1.01938 1.46890 1.06751 1.03594 1.75996 1.19412 0.96647 0.81224 0.91914 1.20981 0.98367 1.06913 0.98637 1.22296 1.04400 1.11013 0.88585 1.46760 1.14854 1.22972 1.07422 1.20133 1.06795 1.25475 0.92960 0.86232 1.25781 0.95051 0.97205 0.99170 1.70155 1.10818 1.30937 1.26546 0.85696 0.79671 0.79395 0.78791 1.19293 1.19800 1.18497 1.82595 1.03739 1.08787 1.11956 1.74109 1.20727 1.20490 1.00623 1.17994 0.84196 0.80925 0.76543 1.90912 1.11978 1.86423 1.54561 1.86260 1.41104 1.13912 1.87177 1.21951 0.90760 0.80937 0.96430 1.22500 1.00638 1.04404 0.96294 1.21834 0.99525 0.95164 1.03025 1.22506 1.00804 1.04452 0.96341 0.92887 0.91190 0.91154 0.89323 0.89719 0.82897 0.90699 0.92560 0.91565 0.89156 0.91645 0.90495 0.91788 0.88778 0.91657 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.49 59.84 0.63 1.80 16 2 N -0.59 -10.30 2.86 -188.81 -0.54 -10.84 16 3 C 0.23 4.22 5.97 -5.19 -0.03 4.19 16 4 C -0.10 -2.38 6.68 -83.05 -0.55 -2.94 16 5 C -0.11 -2.52 11.47 -16.56 -0.19 -2.71 16 6 N -0.15 -4.12 3.78 -11.47 -0.04 -4.17 16 7 C -0.32 -8.21 10.30 -14.69 -0.15 -8.36 16 8 H 0.12 2.73 7.84 -52.49 -0.41 2.31 16 9 C 0.05 1.20 5.50 -17.52 -0.10 1.10 16 10 N -0.76 -20.84 11.91 55.49 0.66 -20.17 16 11 Si 0.94 18.21 29.56 -169.99 -5.02 13.18 16 12 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 15 N -0.09 -2.82 11.75 60.35 0.71 -2.11 16 16 N -0.30 -8.45 12.33 33.16 0.41 -8.05 16 17 C 0.65 12.33 7.70 54.05 0.42 12.75 16 18 O -0.55 -11.90 11.46 -19.28 -0.22 -12.12 16 19 O -0.37 -6.11 8.71 -40.31 -0.35 -6.46 16 20 C 0.14 1.92 1.13 -90.62 -0.10 1.81 16 21 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 22 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 23 C -0.18 -2.84 8.37 37.16 0.31 -2.52 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.83 7.37 -51.93 -0.38 0.44 16 26 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 27 H 0.09 1.71 7.42 -51.93 -0.39 1.32 16 28 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 29 H 0.15 2.92 8.06 -52.48 -0.42 2.49 16 30 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.81 5.88 -51.93 -0.31 1.50 16 38 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -34.19 330.19 -4.10 -38.29 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.55 Total: 5.50 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.87 Total: 1.97 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 1.20 Total: -45.34 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.57 Total: -18.58 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.19 -4.10 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864638550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.707 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds