Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46801 * 2 1 4 4 N 1.41599 * 113.99648 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00297 * 270.00210 * 4 3 2 6 6 C 1.52999 * 109.47043 * 255.00318 * 5 4 3 7 7 C 1.34780 * 119.99721 * 90.00500 * 4 3 2 8 8 O 1.21591 * 119.99638 * 179.97438 * 7 4 3 9 9 N 1.34768 * 120.00283 * 359.97438 * 7 4 3 10 10 C 1.40196 * 120.00423 * 180.02562 * 9 7 4 11 11 C 1.40405 * 125.97001 * 0.02562 * 10 9 7 12 12 C 1.35238 * 107.87064 * 179.74102 * 11 10 9 13 13 N 1.34966 * 107.85507 * 0.36692 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.89559 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31207 * 125.97824 * 179.97438 * 10 9 7 24 24 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47171 * 299.99403 * 1 2 3 26 26 H 1.09000 * 109.47463 * 60.00220 * 1 2 3 27 27 H 1.09002 * 109.46808 * 240.00273 * 2 1 3 28 28 H 1.09000 * 109.47179 * 120.00249 * 2 1 3 29 29 H 1.09004 * 109.46934 * 14.99950 * 5 4 3 30 30 H 1.08997 * 109.47134 * 135.00370 * 5 4 3 31 31 H 1.09006 * 109.47152 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47635 * 299.99935 * 6 5 4 33 33 H 1.08998 * 109.47633 * 60.00093 * 6 5 4 34 34 H 0.97000 * 119.99831 * 359.97438 * 9 7 4 35 35 H 1.08004 * 126.06253 * 359.96901 * 11 10 9 36 36 H 1.07999 * 126.07487 * 180.25848 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4178 1.4591 0.0006 5 6 4.1476 1.5171 1.2696 6 6 4.6139 2.9518 1.5246 7 6 4.0901 1.5122 -1.1664 8 8 5.3021 1.6087 -1.1659 9 7 3.4188 1.4584 -2.3338 10 6 4.1181 1.5131 -3.5477 11 6 5.5103 1.6228 -3.6933 12 6 5.7892 1.6385 -5.0165 13 7 4.6210 1.5509 -5.6867 14 6 4.4634 1.5365 -7.1432 15 6 3.6932 0.3076 -7.5530 16 1 3.3547 -0.3923 -6.8034 17 6 3.4209 0.0769 -8.8847 18 7 3.8285 0.9321 -9.7970 19 14 2.4656 -1.4459 -9.3926 20 1 2.3007 -1.4575 -10.8684 21 1 3.2076 -2.6602 -8.9678 22 1 1.1293 -1.4306 -8.7453 23 7 3.5861 1.4699 -4.7463 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.4924 1.1985 2.0804 30 1 5.0134 0.8568 1.2213 31 1 5.1565 2.9950 2.4690 32 1 5.2691 3.2705 0.7139 33 1 3.7481 3.6121 1.5729 34 1 2.4519 1.3811 -2.3342 35 1 6.2308 1.6803 -2.8908 36 1 6.7720 1.7104 -5.4584 37 1 5.4460 1.5234 -7.6148 38 1 3.9207 2.4275 -7.4587 39 1 4.3243 1.7230 -9.5333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878765959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = 58.004574 kcal Electronic energy + Delta-G solvation = -22098.718307 eV Core-core repulsion = 18660.026021 eV Total energy + Delta-G solvation = -3438.692286 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85291 -39.82551 -37.74017 -35.24245 -34.20248 -33.65084 -31.62126 -30.88077 -29.40899 -29.16694 -26.24171 -24.09717 -23.36326 -22.82602 -21.32200 -20.45794 -19.98854 -18.58034 -17.25070 -17.17466 -16.26066 -16.06742 -15.39830 -15.22810 -14.88489 -14.59423 -14.11186 -13.99810 -13.78046 -13.18930 -13.11349 -12.92592 -12.51628 -12.42961 -12.26458 -12.20084 -11.88059 -11.81555 -11.31273 -11.16055 -10.81747 -10.69505 -10.44992 -10.16245 -10.12097 -9.73902 -9.27548 -8.97368 -8.57637 -8.18360 -7.48179 -6.57488 -4.31446 1.51413 2.49806 2.78936 2.97456 3.37608 3.39509 3.58304 3.71631 3.80836 4.40656 4.47909 4.64985 4.76542 4.77603 4.99257 5.02604 5.16130 5.16630 5.35094 5.40452 5.50223 5.56953 5.70421 5.73375 5.77385 6.06021 6.16378 6.23433 6.43085 6.46669 6.64843 6.76312 6.93344 7.39056 7.62136 7.83298 7.85452 8.35092 8.40129 8.56184 8.63609 9.36771 10.80087 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.003907 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.045291 B = 7165.049588 C = 8263.159710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 O -0.146 6.146 4 N -0.492 5.492 5 C 0.138 3.862 6 C -0.170 4.170 7 C 0.724 3.276 8 O -0.549 6.549 9 N -0.637 5.637 10 C 0.275 3.725 11 C -0.284 4.284 12 C 0.052 3.948 13 N -0.318 5.318 14 C 0.250 3.750 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.411 0.589 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -0.101 22.016 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 O -0.152 6.152 4 N -0.275 5.275 5 C 0.018 3.982 6 C -0.228 4.228 7 C 0.426 3.574 8 O -0.424 6.424 9 N -0.286 5.286 10 C 0.021 3.979 11 C -0.316 4.316 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.541 5.541 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.212 1.212 23 N -0.133 5.133 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.179 0.821 36 H 0.185 0.815 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.886 -0.737 19.908 20.129 hybrid contribution 0.703 0.560 1.795 2.008 sum -2.183 -0.177 21.703 21.813 Atomic orbital electron populations 1.21730 0.91968 1.03224 1.03616 1.23173 0.96188 0.85081 1.01719 1.90664 1.02167 1.25549 1.96771 1.49385 0.94540 1.78263 1.05354 1.21556 0.95511 0.98749 0.82411 1.22168 1.02063 0.96074 1.02540 1.15536 0.84553 0.78075 0.79252 1.90911 1.10460 1.56900 1.84114 1.41395 1.10370 1.75217 1.01661 1.18808 0.91025 1.02968 0.85102 1.21501 0.94244 1.19761 0.96075 1.22549 0.92378 1.02470 0.92420 1.48775 1.02008 1.51938 1.07245 1.19755 0.98570 0.99391 0.69152 1.22106 1.39220 1.07696 0.95573 0.91863 1.25919 0.96949 1.03148 0.92169 1.70849 1.35281 1.11919 1.36006 0.83422 0.75943 0.74054 0.76213 1.20515 1.21253 1.21154 1.77358 1.12847 1.28055 0.95087 0.90220 0.91517 0.91169 0.92107 0.92145 0.89534 0.89728 0.91204 0.91120 0.92190 0.75278 0.82062 0.81464 0.93597 0.94770 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.02 0.15 7.04 37.16 0.26 0.41 16 3 O -0.15 -1.64 10.19 -11.47 -0.12 -1.76 16 4 N -0.49 -6.10 3.02 -65.22 -0.20 -6.30 16 5 C 0.14 1.30 6.38 -4.04 -0.03 1.27 16 6 C -0.17 -1.55 10.04 37.16 0.37 -1.18 16 7 C 0.72 11.55 8.18 -86.92 -0.71 10.84 16 8 O -0.55 -9.85 12.54 5.29 0.07 -9.78 16 9 N -0.64 -10.94 5.42 -15.51 -0.08 -11.03 16 10 C 0.28 5.76 8.11 -154.36 -1.25 4.51 16 11 C -0.28 -5.76 9.61 -39.83 -0.38 -6.15 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 14 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 15 C -0.61 -17.21 9.24 -34.44 -0.32 -17.53 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 18 N -0.91 -26.47 13.65 55.43 0.76 -25.71 16 19 Si 1.08 24.98 29.90 -169.99 -5.08 19.90 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 23 N -0.30 -7.20 12.42 31.44 0.39 -6.80 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.82 7.34 -51.93 -0.38 0.44 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 6.35 7.89 -40.82 -0.32 6.03 16 35 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 36 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 39 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -33.18 336.68 -6.98 -40.16 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.56 Total: 4.77 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.00 Total: -0.74 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.64 Total: -57.61 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.05 Total: -11.54 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.18 -6.98 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878765959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.164 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds