Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 H 1.08999 * 109.46802 * 304.99860 * 3 2 1 5 5 C 1.50703 * 109.46963 * 185.00034 * 3 2 1 6 6 H 1.07995 * 120.00009 * 240.00155 * 5 3 2 7 7 C 1.37878 * 119.99689 * 59.99881 * 5 3 2 8 8 N 1.31508 * 120.00541 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99577 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47227 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46982 * 119.99902 * 9 7 5 12 12 H 1.48494 * 109.47058 * 239.99930 * 9 7 5 13 13 N 1.46493 * 109.47099 * 65.00232 * 3 2 1 14 14 C 1.34784 * 119.99864 * 274.99655 * 13 3 2 15 15 O 1.21588 * 119.99858 * 359.72927 * 14 13 3 16 16 N 1.34777 * 119.99964 * 179.73002 * 14 13 3 17 17 C 1.39485 * 119.99809 * 180.02562 * 16 14 13 18 18 C 1.36069 * 126.21501 * 359.68627 * 17 16 14 19 19 C 1.40156 * 107.81388 * 179.84650 * 18 17 16 20 20 O 1.35984 * 125.83487 * 180.14084 * 19 18 17 21 21 C 1.42896 * 116.99940 * 180.30548 * 20 19 18 22 22 N 1.31110 * 108.32705 * 0.42238 * 19 18 17 23 23 N 1.35793 * 126.21514 * 179.97438 * 17 16 14 24 24 C 1.46497 * 126.04926 * 359.97438 * 23 17 16 25 25 H 1.09002 * 109.46841 * 60.00075 * 1 2 3 26 26 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46886 * 300.00028 * 1 2 3 28 28 H 1.09000 * 109.46886 * 239.99972 * 2 1 3 29 29 H 1.09002 * 109.46841 * 119.99925 * 2 1 3 30 30 H 0.96996 * 120.00555 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00740 * 94.72347 * 13 3 2 32 32 H 0.96996 * 119.99887 * 359.97438 * 16 14 13 33 33 H 1.07996 * 126.08966 * 0.02562 * 18 17 16 34 34 H 1.08994 * 109.47417 * 60.00172 * 21 20 19 35 35 H 1.09005 * 109.47247 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.47037 * 299.99435 * 21 20 19 37 37 H 1.09000 * 109.47464 * 89.99864 * 24 23 17 38 38 H 1.09000 * 109.47363 * 209.99909 * 24 23 17 39 39 H 1.08999 * 109.46949 * 330.00215 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5439 -0.1931 11 1 6.4962 -0.5192 -1.4626 12 1 6.4001 1.6154 -2.6091 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3394 2.6366 0.4302 16 7 0.0766 3.2622 2.5204 17 6 -1.1834 3.8485 2.6397 18 6 -2.1426 3.8958 1.6758 19 6 -3.2514 4.5688 2.2069 20 8 -4.4182 4.8188 1.5550 21 6 -5.4258 5.5291 2.2777 22 7 -2.9689 4.9213 3.4378 23 7 -1.6735 4.4805 3.7371 24 6 -0.9718 4.6680 5.0094 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0611 -2.9499 31 1 2.2705 2.1196 1.9992 32 1 0.6945 3.2841 3.2678 33 1 -2.0646 3.4851 0.6801 34 1 -5.0409 6.5049 2.5738 35 1 -6.3027 5.6611 1.6438 36 1 -5.7027 4.9625 3.1668 37 1 -0.4154 5.6049 4.9829 38 1 -1.6965 4.6988 5.8230 39 1 -0.2813 3.8398 5.1689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881244194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = 25.070434 kcal Electronic energy + Delta-G solvation = -22423.999502 eV Core-core repulsion = 18983.879084 eV Total energy + Delta-G solvation = -3440.120417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36390 -39.52452 -38.09088 -35.54183 -34.26439 -32.64327 -32.45932 -30.92073 -28.77154 -27.81406 -26.83286 -25.83080 -23.27979 -22.05270 -20.96096 -20.05525 -19.60078 -18.60888 -17.68366 -16.21136 -16.17589 -15.92246 -15.61846 -15.27835 -14.98583 -14.66568 -14.36449 -14.03772 -13.48203 -13.20257 -12.87090 -12.69791 -12.52162 -12.33382 -11.93811 -11.65690 -11.29875 -11.28222 -11.00166 -10.88859 -10.52928 -10.36194 -10.31923 -10.19827 -9.63093 -9.38313 -9.07972 -8.55603 -8.35910 -8.10872 -7.73179 -6.16641 -4.26340 1.95462 2.12319 2.85632 3.05808 3.21187 3.29504 3.31371 3.58536 3.82085 4.28197 4.47627 4.77067 5.01671 5.11353 5.15357 5.22615 5.23338 5.34457 5.51878 5.63357 5.85693 6.16368 6.39462 6.46093 6.62655 6.64388 6.89162 7.06120 7.19275 7.28993 7.32258 7.38768 7.48978 7.60128 7.76502 7.85330 7.94932 8.14034 8.63377 8.75836 9.12115 9.41279 10.88704 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.003771 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.545901 B = 7424.102489 C = 7919.324313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.713 5.713 14 C 0.699 3.301 15 O -0.556 6.556 16 N -0.669 5.669 17 C 0.363 3.637 18 C -0.284 4.284 19 C 0.275 3.725 20 O -0.288 6.288 21 C 0.034 3.966 22 N -0.353 5.353 23 N -0.392 5.392 24 C 0.108 3.892 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.402 0.598 33 H 0.183 0.817 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 6.865 13.259 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.364 5.364 14 C 0.398 3.602 15 O -0.431 6.431 16 N -0.320 5.320 17 C 0.142 3.858 18 C -0.316 4.316 19 C 0.071 3.929 20 O -0.192 6.192 21 C -0.061 4.061 22 N -0.193 5.193 23 N -0.185 5.185 24 C -0.034 4.034 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.237 0.763 33 H 0.200 0.800 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.417 7.197 12.936 17.545 hybrid contribution 1.860 -0.264 0.361 1.913 sum -7.557 6.933 13.297 16.792 Atomic orbital electron populations 1.21831 0.98145 0.98119 1.01363 1.21974 0.92783 0.99721 1.02333 1.18802 0.94152 0.88946 0.79630 0.92911 1.21229 0.90510 1.39248 1.06413 0.92009 1.24872 0.98642 0.94760 0.95341 1.69895 1.35086 1.37406 1.09301 0.86388 0.84753 0.77776 0.78130 1.19794 1.20874 1.20850 1.45826 1.12761 1.58400 1.19446 1.15863 0.83937 0.78886 0.81469 1.90863 1.51347 1.63328 1.37534 1.42267 1.13505 1.59047 1.17147 1.17576 0.86387 0.93897 0.87924 1.20917 0.91053 1.15960 1.03695 1.20327 0.87434 0.95133 0.90007 1.86324 1.21297 1.73087 1.38468 1.22912 0.89774 0.96038 0.97404 1.77365 0.95736 1.30389 1.15803 1.47879 1.11485 1.48275 1.10899 1.21720 0.96636 1.02335 0.82674 0.92947 0.95860 0.94325 0.88142 0.95045 0.92509 0.78139 0.76301 0.79964 0.92737 0.88501 0.92753 0.91044 0.89175 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.29 6.85 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.47 7.57 -51.93 -0.39 1.08 16 5 C -0.54 -13.50 8.73 -34.44 -0.30 -13.80 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.30 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.71 -13.69 5.02 -59.81 -0.30 -13.99 16 14 C 0.70 13.26 7.09 -86.91 -0.62 12.64 16 15 O -0.56 -12.50 10.62 5.29 0.06 -12.44 16 16 N -0.67 -9.81 5.42 -15.73 -0.09 -9.90 16 17 C 0.36 5.81 7.68 -152.68 -1.17 4.64 16 18 C -0.28 -5.22 9.67 -39.64 -0.38 -5.60 16 19 C 0.28 4.66 7.88 -17.14 -0.14 4.53 16 20 O -0.29 -4.44 10.58 -19.69 -0.21 -4.65 16 21 C 0.03 0.37 10.69 101.05 1.08 1.45 16 22 N -0.35 -5.51 11.96 30.53 0.37 -5.15 16 23 N -0.39 -5.40 4.04 -67.05 -0.27 -5.67 16 24 C 0.11 0.89 11.29 59.85 0.68 1.56 16 25 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 6.21 8.56 -40.82 -0.35 5.86 16 32 H 0.40 4.23 8.00 -40.82 -0.33 3.91 16 33 H 0.18 3.77 5.82 -52.49 -0.31 3.46 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.48 7.51 -51.93 -0.39 0.09 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -31.63 324.27 -6.16 -37.79 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.28 Total: 9.56 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.93 Total: 7.91 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.33 Total: -58.02 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.15 Total: -17.09 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.63 -6.16 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881244194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds