Wall clock time and date at job start Tue Mar 31 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.47027 * 2 1 4 4 H 1.09000 * 109.46921 * 54.99964 * 3 2 1 5 5 C 1.50698 * 109.47111 * 175.00365 * 3 2 1 6 6 H 1.07997 * 120.00169 * 120.00084 * 5 3 2 7 7 C 1.37877 * 119.99565 * 299.99724 * 5 3 2 8 8 N 1.31514 * 119.99925 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00300 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46989 * 90.00305 * 9 7 5 11 11 H 1.48504 * 109.46994 * 209.99832 * 9 7 5 12 12 H 1.48493 * 109.47176 * 330.00118 * 9 7 5 13 13 N 1.46502 * 109.46838 * 295.00066 * 3 2 1 14 14 C 1.34783 * 119.99942 * 85.00557 * 13 3 2 15 15 O 1.21582 * 119.99880 * 359.97438 * 14 13 3 16 16 N 1.34769 * 119.99840 * 179.97438 * 14 13 3 17 17 C 1.39487 * 119.99982 * 179.97438 * 16 14 13 18 18 C 1.36058 * 126.21687 * 359.68709 * 17 16 14 19 19 C 1.40158 * 107.82124 * 180.26506 * 18 17 16 20 20 O 1.35989 * 125.83677 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99787 * 179.97438 * 20 19 18 22 22 N 1.31101 * 108.31989 * 359.97438 * 19 18 17 23 23 N 1.35804 * 126.21769 * 179.97438 * 17 16 14 24 24 C 1.46498 * 126.04279 * 359.69887 * 23 17 16 25 25 H 1.08995 * 109.46760 * 300.00105 * 1 2 3 26 26 H 1.09000 * 109.46871 * 59.99917 * 1 2 3 27 27 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47411 * 240.00258 * 2 1 3 29 29 H 1.09000 * 109.47563 * 119.99795 * 2 1 3 30 30 H 0.97003 * 120.00562 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00153 * 264.99706 * 13 3 2 32 32 H 0.96998 * 120.00256 * 359.97438 * 16 14 13 33 33 H 1.08000 * 126.08943 * 0.22441 * 18 17 16 34 34 H 1.08997 * 109.46945 * 180.02562 * 21 20 19 35 35 H 1.08999 * 109.47515 * 300.00490 * 21 20 19 36 36 H 1.09000 * 109.47210 * 60.00241 * 21 20 19 37 37 H 1.09001 * 109.47383 * 90.00341 * 24 23 17 38 38 H 1.09000 * 109.47044 * 210.00492 * 24 23 17 39 39 H 1.09007 * 109.47214 * 329.99829 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4444 0.1237 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0965 0.1090 2.5700 10 1 2.8757 -1.3272 2.2633 11 1 3.7938 0.2349 3.8751 12 1 1.7878 0.8073 2.6386 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3669 15 8 -0.3415 2.6320 -0.4320 16 7 0.0787 3.2674 -2.5183 17 6 -1.1813 3.8537 -2.6377 18 6 -2.1470 3.8858 -1.6798 19 6 -3.2542 4.5627 -2.2093 20 8 -4.4252 4.8029 -1.5612 21 6 -5.4324 5.5141 -2.2835 22 7 -2.9676 4.9246 -3.4364 23 7 -1.6691 4.4915 -3.7329 24 6 -0.9617 4.6920 -5.0000 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8900 30 1 5.8772 0.4821 2.1128 31 1 2.2719 2.1232 -1.9978 32 1 0.6984 3.2936 -3.2641 33 1 -2.0738 3.4641 -0.6882 34 1 -6.3125 5.6385 -1.6526 35 1 -5.0503 6.4937 -2.5707 36 1 -5.7026 4.9530 -3.1780 37 1 -1.1623 3.8520 -5.6650 38 1 -1.3063 5.6150 -5.4664 39 1 0.1099 4.7584 -4.8114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881244195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:13 Heat of formation + Delta-G solvation = 33.326060 kcal Electronic energy + Delta-G solvation = -22520.781273 eV Core-core repulsion = 19081.018846 eV Total energy + Delta-G solvation = -3439.762427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45469 -39.70354 -38.17032 -35.83443 -34.40600 -32.70837 -32.46638 -31.50864 -28.90032 -27.90079 -27.31636 -25.89039 -23.02925 -22.24381 -21.10627 -20.24872 -19.91823 -18.74617 -17.79780 -16.37148 -16.29172 -16.14644 -15.75108 -15.47685 -15.14067 -14.72948 -14.47255 -14.14997 -13.55951 -13.28274 -13.22132 -12.86594 -12.60794 -12.50088 -12.06345 -11.99313 -11.84643 -11.40919 -11.12247 -10.95885 -10.67042 -10.56905 -10.42826 -9.95116 -9.64537 -9.43093 -9.26993 -8.81682 -8.43561 -8.29705 -7.88072 -6.25355 -4.28738 1.87342 2.03574 2.75472 2.97299 3.22216 3.34822 3.39716 3.50207 3.65277 4.28497 4.42356 4.56709 4.97394 5.06060 5.08574 5.17777 5.19444 5.29317 5.46600 5.54214 5.76270 5.95705 6.01879 6.06538 6.15581 6.51743 6.58571 6.70124 6.77132 6.88482 6.98955 7.17151 7.22111 7.32168 7.41401 7.47376 7.80095 8.18285 8.47717 8.71666 8.93124 9.34774 10.86461 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.004095 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.460503 B = 6836.466448 C = 7433.035390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.260 3.740 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.702 3.298 15 O -0.558 6.558 16 N -0.667 5.667 17 C 0.362 3.638 18 C -0.284 4.284 19 C 0.275 3.725 20 O -0.288 6.288 21 C 0.034 3.966 22 N -0.351 5.351 23 N -0.390 5.390 24 C 0.107 3.893 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.404 0.596 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 6.069 -11.987 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.357 5.357 14 C 0.401 3.599 15 O -0.433 6.433 16 N -0.318 5.318 17 C 0.141 3.859 18 C -0.316 4.316 19 C 0.071 3.929 20 O -0.192 6.192 21 C -0.061 4.061 22 N -0.191 5.191 23 N -0.184 5.184 24 C -0.035 4.035 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.240 0.760 33 H 0.200 0.800 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.452 6.456 -11.757 19.717 hybrid contribution 0.537 -0.715 0.254 0.930 sum -13.914 5.740 -11.503 18.944 Atomic orbital electron populations 1.21869 0.96724 0.99105 1.02410 1.22322 0.94538 0.99867 1.01181 1.19140 0.95545 0.88273 0.81403 0.92925 1.21005 0.88435 1.40115 1.07986 0.90170 1.24812 0.94886 0.95064 0.97648 1.69858 1.08719 1.44303 1.29873 0.86906 0.81036 0.79991 0.80866 1.20185 1.22121 1.18252 1.45420 1.12958 1.58326 1.19019 1.15788 0.83744 0.78795 0.81542 1.90861 1.51285 1.63501 1.37678 1.42156 1.13577 1.58690 1.17330 1.17548 0.86224 0.94045 0.88085 1.20894 0.90920 1.15862 1.03917 1.20318 0.87430 0.95170 0.90010 1.86322 1.20971 1.73100 1.38811 1.22919 0.89762 0.96054 0.97408 1.77372 0.95485 1.30393 1.15836 1.47894 1.11240 1.48007 1.11228 1.21746 0.95678 1.03702 0.82331 0.92669 0.92947 0.94986 0.92293 0.92630 0.92192 0.77354 0.76050 0.80006 0.88475 0.92699 0.92714 0.90990 0.89091 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.14 -2.99 5.11 -26.72 -0.14 -3.12 16 3 C 0.26 5.83 1.83 -69.08 -0.13 5.71 16 4 H 0.05 1.32 6.64 -51.93 -0.34 0.97 16 5 C -0.54 -13.88 9.31 -34.44 -0.32 -14.20 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 9 Si 0.88 21.17 24.41 -169.99 -4.15 17.02 16 10 H -0.27 -6.40 6.83 56.52 0.39 -6.01 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.71 -12.83 5.03 -59.81 -0.30 -13.13 16 14 C 0.70 12.47 7.10 -86.92 -0.62 11.85 16 15 O -0.56 -11.69 10.60 5.29 0.06 -11.64 16 16 N -0.67 -9.18 5.42 -15.73 -0.09 -9.27 16 17 C 0.36 5.49 7.68 -152.67 -1.17 4.32 16 18 C -0.28 -4.95 9.66 -39.64 -0.38 -5.34 16 19 C 0.27 4.46 7.88 -17.14 -0.14 4.33 16 20 O -0.29 -4.26 10.58 -19.70 -0.21 -4.47 16 21 C 0.03 0.35 10.69 101.05 1.08 1.43 16 22 N -0.35 -5.27 11.95 30.53 0.36 -4.91 16 23 N -0.39 -5.13 4.04 -67.05 -0.27 -5.40 16 24 C 0.11 0.83 11.29 59.85 0.68 1.50 16 25 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 26 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.25 3.21 -51.93 -0.17 1.09 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.39 6.07 8.55 -40.82 -0.35 5.72 16 32 H 0.40 3.95 8.00 -40.82 -0.33 3.62 16 33 H 0.18 3.55 5.82 -52.49 -0.31 3.24 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.45 7.52 -51.93 -0.39 0.06 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -32.75 317.49 -5.10 -37.84 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.15 Total: 8.07 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.92 Total: 6.05 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.48 Total: -57.66 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.15 Total: -16.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.15 Total: 17.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.75 -5.10 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881244195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.170 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds