Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35977 * 117.00521 * 2 1 4 4 C 1.40154 * 125.84567 * 180.29794 * 3 2 1 5 5 C 1.36065 * 107.82534 * 180.14484 * 4 3 2 6 6 N 1.39480 * 126.21603 * 179.84716 * 5 4 3 7 7 C 1.34775 * 120.00138 * 359.68922 * 6 5 4 8 8 O 1.21580 * 120.00134 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99806 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47175 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.46998 * 240.00388 * 11 9 7 14 14 C 1.50697 * 109.46896 * 120.00459 * 11 9 7 15 15 H 1.07994 * 120.00496 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99687 * 179.97438 * 14 11 9 17 17 N 1.31518 * 120.00216 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00016 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46954 * 60.00173 * 18 16 14 20 20 H 1.48503 * 109.47431 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47490 * 300.00258 * 18 16 14 22 22 N 1.35801 * 107.56301 * 359.58476 * 5 4 3 23 23 C 1.46501 * 126.04385 * 180.23991 * 22 5 4 24 24 N 1.31113 * 125.83654 * 359.97223 * 3 2 1 25 25 H 1.08995 * 109.47303 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46710 * 60.00264 * 1 2 3 27 27 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.08007 * 126.08448 * 359.97438 * 4 3 2 29 29 H 0.97005 * 119.99479 * 179.69359 * 6 5 4 30 30 H 1.08999 * 109.47264 * 269.99330 * 10 9 7 31 31 H 1.09000 * 109.47703 * 29.99711 * 10 9 7 32 32 H 1.09007 * 109.46950 * 150.00077 * 10 9 7 33 33 H 1.09000 * 109.47050 * 299.99945 * 13 11 9 34 34 H 1.09001 * 109.46801 * 60.00058 * 13 11 9 35 35 H 1.09001 * 109.46998 * 179.97438 * 13 11 9 36 36 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.46924 * 90.00510 * 23 22 5 38 38 H 1.09001 * 109.46727 * 209.99807 * 23 22 5 39 39 H 1.08999 * 109.46907 * 329.99994 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4313 1.4269 -0.0059 5 6 3.6438 2.7709 -0.0004 6 7 4.8840 3.4091 -0.0006 7 6 6.0173 2.6796 -0.0002 8 8 5.9586 1.4652 -0.0002 9 7 7.2157 3.2964 -0.0008 10 6 7.2863 4.7597 -0.0014 11 6 8.4476 2.5035 -0.0010 12 1 8.1969 1.4427 -0.0010 13 6 9.2672 2.8344 1.2480 14 6 9.2540 2.8287 -1.2318 15 1 8.8857 3.5531 -1.9430 16 6 10.4623 2.2013 -1.4499 17 7 10.9107 1.3187 -0.5840 18 14 11.4616 2.6037 -2.9758 19 1 11.8025 4.0491 -2.9773 20 1 12.7104 1.8001 -2.9760 21 1 10.6662 2.2816 -4.1878 22 7 2.4290 3.3778 -0.0008 23 6 2.1873 4.8228 -0.0009 24 7 1.4479 2.3781 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 4.1940 0.6622 -0.0109 29 1 4.9308 4.3780 -0.0009 30 1 7.3036 5.1222 -1.0292 31 1 6.4151 5.1658 0.5125 32 1 8.1931 5.0798 0.5120 33 1 9.5178 3.8952 1.2475 34 1 8.6838 2.5992 2.1382 35 1 10.1835 2.2441 1.2481 36 1 11.7609 0.8776 -0.7373 37 1 2.1276 5.1811 -1.0286 38 1 1.2494 5.0343 0.5127 39 1 3.0051 5.3279 0.5132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881247874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = 40.682137 kcal Electronic energy + Delta-G solvation = -22479.559614 eV Core-core repulsion = 19040.116171 eV Total energy + Delta-G solvation = -3439.443443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36346 -39.59709 -38.07985 -35.69287 -34.48647 -32.79647 -32.62710 -29.70784 -28.45395 -27.73353 -26.31105 -25.81870 -25.24234 -22.58778 -21.11542 -20.27757 -19.15628 -18.45725 -16.98482 -16.29521 -16.15243 -16.10222 -15.74099 -15.21825 -14.97423 -14.65110 -14.36059 -14.03438 -13.32637 -13.17626 -13.03053 -12.68489 -12.58321 -12.51736 -11.93507 -11.72356 -11.59953 -11.35737 -11.09686 -10.86385 -10.78476 -10.48579 -10.37469 -10.25250 -10.17552 -9.40649 -9.18745 -8.45981 -8.34643 -8.02948 -7.60035 -6.10013 -4.18342 1.96372 2.13187 2.86189 3.06887 3.26651 3.32481 3.34102 3.57807 3.79616 4.26780 4.41502 4.48325 5.01862 5.12063 5.21073 5.23472 5.23985 5.35600 5.40058 5.52344 5.62118 5.82627 5.88574 6.12586 6.18227 6.56814 6.69734 6.77141 6.89825 7.03354 7.25004 7.37654 7.45933 7.62270 7.71599 7.89714 8.00983 8.15480 8.49400 8.80987 9.05494 9.48312 10.95287 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.003975 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.622100 B = 7042.186724 C = 7483.190975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.288 6.288 3 C 0.276 3.724 4 C -0.284 4.284 5 C 0.362 3.638 6 N -0.667 5.667 7 C 0.703 3.297 8 O -0.558 6.558 9 N -0.599 5.599 10 C 0.085 3.915 11 C 0.273 3.727 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 N -0.392 5.392 23 C 0.108 3.892 24 N -0.352 5.352 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.183 0.817 29 H 0.403 0.597 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.013 0.987 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 7.906 2.543 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.191 6.191 3 C 0.072 3.928 4 C -0.316 4.316 5 C 0.141 3.859 6 N -0.319 5.319 7 C 0.404 3.596 8 O -0.433 6.433 9 N -0.334 5.334 10 C -0.059 4.059 11 C 0.173 3.827 12 H 0.086 0.914 13 C -0.207 4.207 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.202 1.202 22 N -0.186 5.186 23 C -0.033 4.033 24 N -0.192 5.192 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.200 0.800 29 H 0.240 0.760 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.201 7.275 2.580 17.946 hybrid contribution 1.077 0.772 -0.865 1.583 sum -15.123 8.047 1.715 17.217 Atomic orbital electron populations 1.22913 0.78231 1.03171 1.01812 1.86324 1.21588 1.21764 1.89473 1.20313 0.91561 0.84825 0.96127 1.20922 0.93691 0.94423 1.22583 1.17589 0.79586 0.90039 0.98672 1.42361 1.02183 1.09898 1.77503 1.15721 0.79778 0.85275 0.78829 1.90839 1.84634 1.11326 1.56534 1.47623 1.05054 1.06407 1.74270 1.21549 1.01666 0.81492 1.01227 1.18969 0.77259 0.92345 0.94102 0.91438 1.22130 1.02545 1.00203 0.95814 1.21267 1.04209 1.24878 1.06397 0.92303 1.24874 0.97334 0.94727 0.96725 1.69861 1.20820 1.26464 1.35303 0.86537 0.79304 0.78245 0.83172 1.20280 1.21140 1.20230 1.47874 1.01009 1.05651 1.64017 1.21719 1.03732 0.74820 1.03075 1.77357 1.11202 0.94707 1.35973 0.92745 0.92738 0.88497 0.80002 0.76011 0.92969 0.93882 0.90029 0.95076 0.96798 0.88550 0.92530 0.91016 0.89123 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.69 101.05 1.08 1.46 16 2 O -0.29 -4.53 10.58 -19.67 -0.21 -4.74 16 3 C 0.28 4.79 7.88 -17.14 -0.14 4.65 16 4 C -0.28 -5.42 9.66 -39.64 -0.38 -5.80 16 5 C 0.36 6.07 7.68 -152.68 -1.17 4.89 16 6 N -0.67 -10.55 5.28 -15.73 -0.08 -10.64 16 7 C 0.70 14.40 8.25 -86.92 -0.72 13.68 16 8 O -0.56 -13.61 12.79 5.29 0.07 -13.55 16 9 N -0.60 -12.15 2.75 -181.01 -0.50 -12.64 16 10 C 0.08 1.28 9.44 59.85 0.57 1.84 16 11 C 0.27 6.73 2.64 -69.08 -0.18 6.55 16 12 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 13 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 14 C -0.53 -13.86 8.37 -34.44 -0.29 -14.15 16 15 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.39 -5.58 4.04 -67.05 -0.27 -5.85 16 23 C 0.11 0.92 11.29 59.85 0.68 1.60 16 24 N -0.35 -5.62 11.96 30.53 0.37 -5.25 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.18 3.92 5.82 -52.48 -0.31 3.61 16 29 H 0.40 4.77 5.71 -40.82 -0.23 4.53 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.47 6.36 -51.93 -0.33 0.14 16 32 H 0.08 1.25 6.43 -51.92 -0.33 0.91 16 33 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.49 7.51 -51.93 -0.39 0.10 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -32.86 324.15 -5.56 -38.43 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.11 Total: 4.32 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -0.32 Total: 13.31 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.14 Total: -58.30 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.14 Total: -18.28 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.86 -5.56 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881247874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.108 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds