Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47003 * 2 1 4 4 C 1.46508 * 119.99704 * 269.99976 * 3 2 1 5 5 C 1.50701 * 109.47206 * 269.99966 * 4 3 2 6 6 H 1.08002 * 119.99864 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99930 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99943 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99957 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47576 * 120.00119 * 9 7 5 12 12 H 1.48502 * 109.47196 * 240.00206 * 9 7 5 13 13 C 1.34771 * 120.00205 * 90.00397 * 3 2 1 14 14 O 1.21587 * 120.00038 * 179.97438 * 13 3 2 15 15 N 1.34776 * 119.99923 * 359.97438 * 13 3 2 16 16 C 1.39482 * 119.99935 * 180.02562 * 15 13 3 17 17 C 1.36065 * 126.21727 * 0.02624 * 16 15 13 18 18 C 1.40155 * 107.82202 * 180.02562 * 17 16 15 19 19 O 1.35989 * 125.84261 * 179.97438 * 18 17 16 20 20 C 1.42894 * 116.99897 * 179.97438 * 19 18 17 21 21 N 1.31114 * 108.32163 * 359.97438 * 18 17 16 22 22 N 1.35804 * 126.21986 * 180.02562 * 16 15 13 23 23 C 1.46505 * 126.04363 * 0.04127 * 22 16 15 24 24 H 1.09002 * 109.47151 * 299.99755 * 1 2 3 25 25 H 1.08992 * 109.47412 * 59.99901 * 1 2 3 26 26 H 1.09003 * 109.46756 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47151 * 240.00245 * 2 1 3 28 28 H 1.09002 * 109.47844 * 119.99799 * 2 1 3 29 29 H 1.08995 * 109.46867 * 29.99849 * 4 3 2 30 30 H 1.08996 * 109.46963 * 150.00357 * 4 3 2 31 31 H 0.97003 * 119.99667 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00381 * 0.02562 * 15 13 3 33 33 H 1.07998 * 126.09347 * 0.02562 * 17 16 15 34 34 H 1.09002 * 109.47485 * 60.00333 * 20 19 18 35 35 H 1.09006 * 109.46969 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47434 * 299.99290 * 20 19 18 37 37 H 1.09002 * 109.46908 * 269.98164 * 23 22 16 38 38 H 1.09001 * 109.46949 * 29.97741 * 23 22 16 39 39 H 1.08996 * 109.47137 * 149.97430 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7039 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3905 -2.8776 8 7 3.3492 3.1265 -3.6177 9 14 5.9133 2.0964 -3.4172 10 1 6.6007 1.2405 -2.4172 11 1 5.9204 1.4183 -4.7383 12 1 6.6214 3.3973 -3.5248 13 6 2.2430 2.0166 1.1671 14 8 2.6487 3.1628 1.1671 15 7 2.0180 1.3814 2.3343 16 6 2.2500 2.0391 3.5423 17 6 2.7003 3.3146 3.6896 18 6 2.7946 3.5804 5.0625 19 8 3.2080 4.7495 5.6207 20 6 3.2307 4.8145 7.0480 21 7 2.4160 2.5090 5.7166 22 7 2.0675 1.5229 4.7850 23 6 1.5916 0.1727 5.0963 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 3.6755 3.5176 -4.4433 32 1 1.6946 0.4669 2.3344 33 1 2.9421 4.0002 2.8909 34 1 3.9044 4.0505 7.4359 35 1 3.5792 5.7987 7.3613 36 1 2.2263 4.6441 7.4355 37 1 0.5044 0.1795 5.1733 38 1 1.8954 -0.5113 4.3038 39 1 2.0210 -0.1546 6.0431 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881250088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = 35.098584 kcal Electronic energy + Delta-G solvation = -22488.353032 eV Core-core repulsion = 19048.667467 eV Total energy + Delta-G solvation = -3439.685564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34722 -39.59507 -38.05745 -35.60487 -34.47168 -32.75628 -32.58109 -30.26703 -29.00337 -27.82522 -26.83900 -25.80321 -23.30431 -23.16558 -21.35924 -20.63672 -19.19430 -18.48741 -16.93642 -16.47564 -16.14287 -16.09501 -15.73695 -15.16774 -14.90096 -14.55377 -14.32006 -13.97057 -13.77614 -13.31036 -13.14880 -12.87640 -12.53268 -12.49044 -12.13817 -11.91215 -11.85214 -11.32618 -11.25592 -10.98825 -10.87532 -10.59746 -10.47034 -10.34083 -10.11403 -9.66188 -9.29284 -8.45289 -8.32809 -8.03751 -7.63948 -6.06287 -4.10991 1.98509 2.14994 2.88064 3.09310 3.29799 3.38192 3.41784 3.59215 3.83218 4.23255 4.45541 4.49543 5.02216 5.11910 5.13134 5.23625 5.25389 5.28365 5.36943 5.44875 5.49299 5.55744 5.67476 5.80065 5.90185 6.09720 6.20422 6.35737 6.60311 6.77126 7.19353 7.30222 7.41302 7.49480 7.57384 7.88834 7.92976 8.19339 8.43838 8.88960 9.10461 9.54504 11.01713 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.004584 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.467206 B = 6106.665202 C = 7101.316786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.705 3.295 14 O -0.548 6.548 15 N -0.668 5.668 16 C 0.362 3.638 17 C -0.284 4.284 18 C 0.276 3.724 19 O -0.287 6.287 20 C 0.034 3.966 21 N -0.353 5.353 22 N -0.392 5.392 23 C 0.108 3.892 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.402 0.598 33 H 0.183 0.817 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -7.620 16.071 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.406 3.594 14 O -0.421 6.421 15 N -0.320 5.320 16 C 0.141 3.859 17 C -0.316 4.316 18 C 0.072 3.928 19 O -0.191 6.191 20 C -0.061 4.061 21 N -0.193 5.193 22 N -0.186 5.186 23 C -0.033 4.033 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.200 0.800 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.687 -6.987 16.787 19.052 hybrid contribution 0.834 -0.616 -0.847 1.339 sum -4.853 -7.602 15.940 18.315 Atomic orbital electron populations 1.22265 0.96500 1.01593 1.02708 1.21414 0.93676 0.84251 1.02567 1.47622 1.66904 1.13288 1.05858 1.19302 0.96398 0.93616 0.76507 1.21477 0.96911 1.32034 1.06304 0.92363 1.24911 0.97847 0.94849 0.96355 1.69935 1.35598 1.33356 1.14370 0.86443 0.84624 0.78118 0.78224 1.19850 1.21009 1.20816 1.15671 0.79510 0.84789 0.79477 1.90863 1.50396 1.16230 1.84633 1.42386 1.70112 1.17075 1.02458 1.17585 0.97725 0.90994 0.79562 1.20934 1.19271 0.96903 0.94479 1.20318 0.94809 0.85873 0.91813 1.86329 1.81819 1.28316 1.22670 1.22911 1.01917 1.02888 0.78408 1.77352 1.31261 0.98046 1.12622 1.47866 1.57608 1.12098 1.01017 1.21712 0.99998 0.78262 1.03356 0.93167 0.91536 0.91956 0.89140 0.92677 0.94544 0.93474 0.92715 0.76141 0.79974 0.92748 0.88512 0.92755 0.91077 0.90270 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.52 5.89 -4.04 -0.02 1.49 16 3 N -0.60 -12.06 2.46 -180.80 -0.44 -12.50 16 4 C 0.26 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.70 14.55 8.24 -86.92 -0.72 13.83 16 14 O -0.55 -13.67 13.05 5.29 0.07 -13.60 16 15 N -0.67 -10.64 5.28 -15.73 -0.08 -10.72 16 16 C 0.36 6.13 7.68 -152.68 -1.17 4.96 16 17 C -0.28 -5.50 9.66 -39.64 -0.38 -5.88 16 18 C 0.28 4.86 7.88 -17.14 -0.14 4.72 16 19 O -0.29 -4.61 10.58 -19.70 -0.21 -4.82 16 20 C 0.03 0.38 10.69 101.05 1.08 1.46 16 21 N -0.35 -5.69 11.95 30.53 0.37 -5.32 16 22 N -0.39 -5.63 4.04 -67.04 -0.27 -5.90 16 23 C 0.11 0.93 11.29 59.85 0.68 1.61 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.40 4.80 5.71 -40.82 -0.23 4.57 16 33 H 0.18 4.01 5.82 -52.49 -0.31 3.71 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.51 7.51 -51.93 -0.39 0.12 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -34.59 333.32 -5.99 -40.58 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.41 Total: 2.15 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.74 Total: 13.79 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.14 Total: -18.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.59 -5.99 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881250088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.679 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds