Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35989 * 116.99897 * 2 1 4 4 C 1.40155 * 125.84261 * 179.97438 * 3 2 1 5 5 C 1.36065 * 107.82202 * 179.97438 * 4 3 2 6 6 N 1.39482 * 126.21727 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99935 * 0.02624 * 6 5 4 8 8 O 1.21587 * 120.00039 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99923 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00091 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47170 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47429 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99754 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99995 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46949 * 90.00020 * 17 15 13 19 19 H 1.48501 * 109.47141 * 209.99854 * 17 15 13 20 20 H 1.48502 * 109.47122 * 330.00122 * 17 15 13 21 21 N 1.35804 * 107.56287 * 0.02562 * 5 4 3 22 22 C 1.46505 * 126.04363 * 180.02562 * 21 5 4 23 23 N 1.31114 * 125.83576 * 359.97438 * 3 2 1 24 24 H 1.08997 * 109.47434 * 299.99290 * 1 2 3 25 25 H 1.09002 * 109.47485 * 60.00333 * 1 2 3 26 26 H 1.09006 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.07998 * 126.08450 * 359.96440 * 4 3 2 28 28 H 0.97001 * 119.99685 * 180.02562 * 6 5 4 29 29 H 0.96997 * 120.00500 * 359.97438 * 9 7 6 30 30 H 1.08994 * 109.46648 * 299.99564 * 10 9 7 31 31 H 1.08994 * 109.46943 * 59.99656 * 10 9 7 32 32 H 1.08999 * 109.47355 * 300.00005 * 11 10 9 33 33 H 1.09000 * 109.47201 * 59.99727 * 11 10 9 34 34 H 1.08999 * 109.47123 * 300.00316 * 12 11 10 35 35 H 1.09000 * 109.47144 * 59.99860 * 12 11 10 36 36 H 0.97002 * 119.99975 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46908 * 269.98164 * 22 21 5 38 38 H 1.09001 * 109.46949 * 29.97741 * 22 21 5 39 39 H 1.08996 * 109.47137 * 149.97430 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.4272 0.0005 5 6 3.6435 2.7711 -0.0003 6 7 4.8837 3.4095 -0.0006 7 6 6.0170 2.6802 -0.0007 8 8 5.9585 1.4657 -0.0009 9 7 7.2153 3.2971 -0.0005 10 6 8.4473 2.5043 -0.0011 11 6 9.6568 3.4413 -0.0014 12 6 10.9434 2.6134 -0.0014 13 6 12.1347 3.5364 -0.0011 14 1 11.9887 4.6065 -0.0012 15 6 13.4110 3.0147 -0.0016 16 7 13.5887 1.7116 -0.0019 17 14 14.8876 4.1588 -0.0018 18 1 15.2793 4.4617 1.3982 19 1 16.0213 3.5036 -0.7023 20 1 14.5361 5.4206 -0.7015 21 7 2.4286 3.3780 -0.0006 22 6 2.1867 4.8229 -0.0020 23 7 1.4477 2.3782 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.1939 0.6625 0.0015 28 1 4.9303 4.3784 -0.0008 29 1 7.2621 4.2659 -0.0007 30 1 8.4749 1.8751 0.8885 31 1 8.4747 1.8761 -0.8914 32 1 9.6289 4.0703 -0.8912 33 1 9.6296 4.0699 0.8887 34 1 10.9710 1.9848 0.8886 35 1 10.9708 1.9846 -0.8913 36 1 14.4866 1.3446 -0.0026 37 1 2.1266 5.1822 1.0253 38 1 3.0047 5.3277 -0.5161 39 1 1.2492 5.0339 -0.5163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881250694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = 15.663372 kcal Electronic energy + Delta-G solvation = -21138.164508 eV Core-core repulsion = 17697.636170 eV Total energy + Delta-G solvation = -3440.528338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69659 -39.97368 -38.32838 -35.76473 -34.82836 -33.39169 -32.91884 -31.30873 -29.12968 -28.02212 -26.65993 -26.06881 -23.53676 -22.04821 -21.15545 -20.84678 -20.12156 -18.92700 -17.70168 -16.49882 -16.41985 -16.38444 -15.87419 -15.74821 -15.11623 -14.97777 -14.49423 -14.35543 -14.19917 -14.11563 -13.49272 -12.99439 -12.80330 -12.32873 -12.12393 -11.99566 -11.88346 -11.55721 -10.94427 -10.86830 -10.77269 -10.71426 -10.60988 -10.09901 -9.92670 -9.50863 -9.16866 -9.02190 -8.61441 -8.40107 -8.20253 -6.04619 -4.08013 1.62949 1.75209 2.44911 2.73453 3.21521 3.26888 3.28730 3.35432 3.37693 4.01477 4.22828 4.41863 4.79474 4.90632 5.03036 5.06579 5.14802 5.25735 5.31243 5.32688 5.45847 5.63390 5.71737 5.79563 6.08992 6.22668 6.39255 6.53462 6.58401 6.79471 6.90719 6.95125 7.20424 7.56976 7.59962 7.71982 7.81027 7.93683 8.33608 8.40603 8.98561 9.56347 11.06586 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041423 B = 0.002432 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.792396 B =11509.338287 C =12148.778720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.287 6.287 3 C 0.277 3.723 4 C -0.280 4.280 5 C 0.355 3.645 6 N -0.664 5.664 7 C 0.707 3.293 8 O -0.555 6.555 9 N -0.730 5.730 10 C 0.133 3.867 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.388 5.388 22 C 0.106 3.894 23 N -0.346 5.346 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.182 0.818 28 H 0.407 0.593 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 6.097 -0.067 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.191 6.191 3 C 0.072 3.928 4 C -0.312 4.312 5 C 0.134 3.866 6 N -0.314 5.314 7 C 0.406 3.594 8 O -0.429 6.429 9 N -0.384 5.384 10 C 0.011 3.989 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.181 5.181 22 C -0.035 4.035 23 N -0.186 5.186 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.200 0.800 28 H 0.242 0.758 29 H 0.230 0.770 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.774 5.206 -0.073 26.294 hybrid contribution 1.390 1.459 0.013 2.015 sum -24.384 6.664 -0.059 25.278 Atomic orbital electron populations 1.22948 0.77914 1.03411 1.01929 1.86330 1.21842 1.21564 1.89373 1.20308 0.91501 0.84937 0.96030 1.20885 0.93892 0.94224 1.22237 1.17495 0.79401 0.89994 0.99675 1.41967 1.02177 1.09881 1.77388 1.15697 0.79832 0.85410 0.78479 1.90907 1.85140 1.11285 1.55551 1.45371 1.04397 1.10278 1.78364 1.21663 0.80554 0.94264 1.02466 1.21908 0.94594 0.98406 1.00960 1.19031 0.89451 0.95103 0.97809 1.21182 0.90901 0.92969 1.51126 0.92656 1.25033 0.99148 0.95039 0.95258 1.69961 1.22068 1.10731 1.50387 0.86579 0.82391 0.80823 0.78095 1.20658 1.21194 1.19924 1.47924 1.00865 1.05849 1.63464 1.21774 1.04023 0.74479 1.03266 1.77426 1.11084 0.94726 1.35365 0.92618 0.92625 0.88300 0.80050 0.75799 0.76978 0.91390 0.91400 0.92639 0.92641 0.96156 0.96148 0.92873 0.90821 0.90058 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.69 101.05 1.08 1.38 16 2 O -0.29 -3.81 10.58 -19.70 -0.21 -4.01 16 3 C 0.28 3.99 7.88 -17.14 -0.14 3.86 16 4 C -0.28 -4.29 9.66 -39.64 -0.38 -4.68 16 5 C 0.35 4.53 7.68 -152.68 -1.17 3.36 16 6 N -0.66 -7.01 5.42 -15.73 -0.09 -7.10 16 7 C 0.71 9.91 8.53 -86.92 -0.74 9.17 16 8 O -0.55 -10.06 13.47 5.29 0.07 -9.98 16 9 N -0.73 -9.27 5.56 -65.23 -0.36 -9.63 16 10 C 0.13 2.16 5.67 -4.04 -0.02 2.14 16 11 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 N -0.39 -4.29 4.04 -67.04 -0.27 -4.56 16 22 C 0.11 0.60 11.29 59.85 0.68 1.28 16 23 N -0.35 -4.58 11.95 30.53 0.37 -4.22 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.18 3.14 5.82 -52.49 -0.31 2.83 16 28 H 0.41 2.57 8.00 -40.82 -0.33 2.24 16 29 H 0.40 3.69 8.49 -40.82 -0.35 3.35 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.26 7.51 -51.93 -0.39 -0.13 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -34.86 336.82 -6.65 -41.51 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.56 Total: 0.92 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.39 Total: 1.56 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.38 Total: -51.16 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.14 Total: -14.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.86 -6.65 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881250694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.177 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds