Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00411 * 359.97438 * 13 12 11 15 15 O 1.34230 * 120.00046 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00265 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47356 * 179.97438 * 16 15 13 18 18 H 1.08998 * 115.56133 * 29.41995 * 17 16 15 19 19 C 1.53176 * 117.52281 * 243.63987 * 17 16 15 20 20 C 1.52136 * 117.52352 * 175.19277 * 17 16 15 21 21 C 1.54038 * 121.44423 * 218.33918 * 20 17 16 22 22 C 1.55178 * 101.83313 * 123.35728 * 21 20 17 23 23 O 1.44454 * 103.63168 * 36.32978 * 22 21 20 24 24 C 1.43992 * 107.04693 * 320.43260 * 23 22 21 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 33 33 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 34 34 H 1.08998 * 109.47197 * 299.99947 * 16 15 13 35 35 H 1.09005 * 109.46803 * 59.99746 * 16 15 13 36 36 H 1.08999 * 117.52391 * 0.02562 * 19 17 16 37 37 H 1.09002 * 117.52008 * 145.14940 * 19 17 16 38 38 H 1.08999 * 110.95593 * 241.49347 * 21 20 17 39 39 H 1.09003 * 110.95664 * 5.22237 * 21 20 17 40 40 H 1.08996 * 110.59340 * 277.79223 * 22 21 20 41 41 H 1.08998 * 110.72172 * 154.92696 * 22 21 20 42 42 H 1.09001 * 109.97193 * 266.93143 * 24 23 22 43 43 H 1.09003 * 110.00288 * 145.68817 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7207 -7.4551 0.0005 14 8 0.5125 -7.4552 0.0015 15 8 2.3918 -8.6176 0.0005 16 6 1.6010 -9.8354 0.0011 17 6 2.5330 -11.0488 0.0004 18 1 3.4991 -10.9000 0.4826 19 6 2.4849 -11.9775 -1.2168 20 6 1.8951 -12.4253 0.1139 21 6 2.5462 -13.5465 0.9455 22 6 1.4088 -13.9086 1.9372 23 8 0.2090 -13.7680 1.1452 24 6 0.3856 -12.6055 0.3140 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 0.8537 -5.0445 0.8914 31 1 0.8532 -5.0451 -0.8886 32 1 3.1003 -6.0924 -0.8899 33 1 3.1016 -6.0923 0.8901 34 1 0.9725 -9.8600 0.8913 35 1 0.9718 -9.8603 -0.8887 36 1 1.7896 -11.7236 -2.0169 37 1 3.4193 -12.4402 -1.5345 38 1 2.8018 -14.3997 0.3171 39 1 3.4240 -13.1785 1.4767 40 1 1.3972 -13.2143 2.7773 41 1 1.5170 -14.9341 2.2903 42 1 -0.0319 -11.7279 0.8077 43 1 -0.1021 -12.7579 -0.6488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884509169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = -134.940281 kcal Electronic energy + Delta-G solvation = -21113.786939 eV Core-core repulsion = 17737.975529 eV Total energy + Delta-G solvation = -3375.811410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74398 -40.13414 -37.28937 -36.19388 -34.98383 -32.69384 -31.06209 -30.05134 -28.42151 -27.34635 -25.68178 -23.17809 -22.77965 -21.65770 -20.60507 -20.04411 -19.69925 -17.60046 -16.90405 -16.67955 -16.43307 -16.15770 -16.05446 -15.44433 -15.01301 -14.62859 -14.41104 -13.92226 -13.57480 -13.30123 -13.04976 -12.84099 -12.65773 -12.30574 -11.94525 -11.88677 -11.69960 -11.67554 -11.36525 -11.17358 -11.00223 -10.64492 -10.59999 -10.55583 -10.46913 -10.38013 -10.22702 -10.01877 -9.65573 -9.29191 -9.03673 -8.31823 -5.96676 -3.99371 2.26328 2.45984 3.14417 3.34777 3.39208 3.41420 3.45444 3.77199 4.12471 4.19434 4.39928 4.47999 4.65503 4.71692 4.82532 4.86329 4.97055 5.09899 5.16456 5.21282 5.23693 5.26154 5.27484 5.30666 5.35103 5.38690 5.46172 5.50104 5.63081 5.75249 6.04532 6.18293 6.35988 6.37597 6.46609 6.75683 6.93808 7.15398 7.71380 7.78948 7.86404 8.03941 8.45578 9.07936 9.64330 11.14588 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052332 B = 0.002047 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.919546 B =13677.383020 C =13894.074634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.505 6.505 15 O -0.359 6.359 16 C 0.094 3.906 17 C -0.134 4.134 18 H 0.122 0.878 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.119 4.119 22 C 0.047 3.953 23 O -0.376 6.376 24 C 0.079 3.921 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -28.915 0.668 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.392 6.392 15 O -0.276 6.276 16 C 0.020 3.980 17 C -0.152 4.152 18 H 0.140 0.860 19 C -0.188 4.188 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.029 4.029 23 O -0.294 6.294 24 C 0.002 3.998 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.006 -28.967 0.677 29.591 hybrid contribution 0.525 1.035 -0.015 1.161 sum 6.532 -27.932 0.662 28.693 Atomic orbital electron populations 1.69962 1.06054 1.26663 1.50770 1.25046 0.94862 0.99269 0.95422 0.86656 0.79559 0.83178 0.78564 1.20276 1.21324 1.20267 1.21234 0.92973 0.91145 1.50631 0.92741 1.19095 0.94030 0.91222 0.97363 1.21649 0.99150 0.93544 1.00415 1.21580 0.97095 0.92703 1.03249 1.21614 0.99933 0.87787 1.05528 1.24242 0.87626 0.85831 0.71976 1.90677 1.15714 1.87843 1.44963 1.86504 1.41862 1.14808 1.84445 1.22445 0.92302 0.80530 1.02698 1.22188 1.01178 0.88520 1.03301 0.85994 1.23150 1.03031 1.01930 0.90685 1.22359 0.96028 0.95753 1.01542 1.22626 0.98597 0.97113 0.97312 1.23580 0.83412 1.02165 0.93779 1.88940 1.38424 1.46550 1.55527 1.22570 0.92459 0.89073 0.95684 0.92966 0.96543 0.96553 0.93189 0.93199 0.91534 0.91540 0.87838 0.87850 0.90740 0.90905 0.87944 0.87769 0.89747 0.89775 0.91874 0.88726 0.91616 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.74 -0.14 -2.35 16 11 C -0.11 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.11 -1.46 5.81 -27.88 -0.16 -1.63 16 13 C 0.46 6.51 7.96 36.01 0.29 6.79 16 14 O -0.51 -8.70 15.73 -18.75 -0.29 -8.99 16 15 O -0.36 -4.35 10.22 -39.26 -0.40 -4.75 16 16 C 0.09 0.94 4.94 37.16 0.18 1.13 16 17 C -0.13 -1.02 5.94 -90.97 -0.54 -1.56 16 18 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 19 C -0.15 -0.96 9.96 -27.01 -0.27 -1.23 16 20 C -0.16 -1.09 2.44 -154.60 -0.38 -1.46 16 21 C -0.12 -0.68 6.94 -25.04 -0.17 -0.85 16 22 C 0.05 0.31 7.73 38.31 0.30 0.61 16 23 O -0.38 -3.58 11.53 -35.23 -0.41 -3.99 16 24 C 0.08 0.64 7.12 37.33 0.27 0.90 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.77 7.40 -51.93 -0.38 0.38 16 35 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 36 H 0.10 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -33.01 357.97 -8.74 -41.75 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -7.45 Total: -4.61 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.30 Total: -14.97 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.10 Total: -17.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.01 -8.74 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884509169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.188 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds