Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47367 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47327 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99958 * 0.02562 * 13 12 11 15 15 O 1.34224 * 120.00003 * 180.02562 * 13 12 11 16 16 C 1.45198 * 117.00264 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47651 * 179.97438 * 16 15 13 18 18 H 1.09008 * 115.56188 * 29.23565 * 17 16 15 19 19 C 1.53175 * 117.52909 * 243.38139 * 17 16 15 20 20 C 1.52131 * 117.52361 * 175.00170 * 17 16 15 21 21 C 1.54030 * 121.47092 * 356.57020 * 20 17 16 22 22 C 1.55191 * 101.83038 * 195.70714 * 21 20 17 23 23 O 1.44459 * 103.62954 * 36.32838 * 22 21 20 24 24 C 1.43992 * 107.04913 * 320.42944 * 23 22 21 25 25 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 29 29 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 30 30 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 31 31 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 32 32 H 1.08998 * 109.47065 * 300.00398 * 12 11 10 33 33 H 1.09001 * 109.46892 * 60.00134 * 12 11 10 34 34 H 1.08995 * 109.47248 * 300.00646 * 16 15 13 35 35 H 1.09008 * 109.46716 * 60.00022 * 16 15 13 36 36 H 1.09005 * 117.51749 * 359.97438 * 19 17 16 37 37 H 1.08994 * 117.52744 * 145.15306 * 19 17 16 38 38 H 1.08996 * 110.96290 * 313.83962 * 21 20 17 39 39 H 1.09000 * 110.95595 * 77.57518 * 21 20 17 40 40 H 1.09003 * 110.59013 * 277.79302 * 22 21 20 41 41 H 1.08994 * 110.72308 * 154.92920 * 22 21 20 42 42 H 1.08999 * 109.97542 * 266.94155 * 24 23 22 43 43 H 1.09004 * 110.00026 * 145.68469 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4744 -6.1501 0.0048 13 6 1.7209 -7.4552 0.0105 14 8 0.5126 -7.4551 0.0161 15 8 2.3920 -8.6176 0.0095 16 6 1.6013 -9.8354 0.0159 17 6 2.5331 -11.0487 0.0130 18 1 3.5028 -10.8982 0.4878 19 6 2.4752 -11.9830 -1.1995 20 6 1.8961 -12.4247 0.1363 21 6 0.3784 -12.5930 0.3380 22 6 0.2817 -14.0685 0.8091 23 8 1.4620 -14.2439 1.6234 24 6 2.5355 -13.5437 0.9671 25 1 -0.4850 0.8401 0.0004 26 1 0.6281 -2.5552 0.8979 27 1 0.6206 -2.5586 -0.8820 28 1 2.8678 -3.6059 -0.8902 29 1 2.8760 -3.6028 0.8897 30 1 0.8573 -5.0435 0.9006 31 1 0.8498 -5.0461 -0.8793 32 1 3.0970 -6.0934 -0.8882 33 1 3.1052 -6.0912 0.8918 34 1 0.9768 -9.8584 0.9089 35 1 0.9680 -9.8619 -0.8710 36 1 1.7728 -11.7332 -1.9947 37 1 3.4069 -12.4472 -1.5227 38 1 0.0094 -11.9136 1.1063 39 1 -0.1580 -12.4473 -0.5996 40 1 0.3010 -14.7457 -0.0449 41 1 -0.6196 -14.2260 1.4015 42 1 3.0814 -14.2258 0.3153 43 1 3.2109 -13.1173 1.7088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884509170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = -135.237490 kcal Electronic energy + Delta-G solvation = -21073.423631 eV Core-core repulsion = 17697.599333 eV Total energy + Delta-G solvation = -3375.824298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72888 -40.13754 -37.31455 -36.19129 -34.98033 -32.69064 -30.82408 -30.13379 -28.85015 -27.00874 -25.64340 -23.26573 -22.75193 -21.70699 -20.58111 -20.04006 -19.64442 -17.58994 -16.91739 -16.65595 -16.39120 -16.16753 -16.12754 -15.52955 -14.97032 -14.55478 -14.37482 -13.94869 -13.67777 -13.10021 -13.05036 -12.95600 -12.65311 -12.29629 -12.03760 -11.81723 -11.67362 -11.62028 -11.39345 -11.16534 -11.00105 -10.62518 -10.59829 -10.53427 -10.46729 -10.36029 -10.30089 -10.02036 -9.65436 -9.29037 -9.03634 -8.31763 -5.96700 -3.99346 2.27005 2.47743 3.14254 3.34844 3.39207 3.41499 3.43776 3.79123 4.15084 4.18611 4.40409 4.48009 4.67752 4.70668 4.81994 4.87226 4.97909 5.14175 5.17568 5.18417 5.22930 5.26204 5.27475 5.29708 5.32695 5.38666 5.49100 5.51725 5.63635 5.76244 6.04803 6.18665 6.35463 6.38013 6.46926 6.75887 6.93974 7.15524 7.71433 7.79747 7.86442 8.03965 8.45650 9.07982 9.64333 11.14564 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.056425 B = 0.002017 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.118356 B =13880.500612 C =14104.718875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.506 6.506 15 O -0.359 6.359 16 C 0.097 3.903 17 C -0.133 4.133 18 H 0.122 0.878 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.126 4.126 22 C 0.050 3.950 23 O -0.377 6.377 24 C 0.085 3.915 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.907 -28.990 -0.877 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.304 3.696 14 O -0.393 6.393 15 O -0.277 6.277 16 C 0.023 3.977 17 C -0.151 4.151 18 H 0.140 0.860 19 C -0.190 4.190 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.026 4.026 23 O -0.296 6.296 24 C 0.008 3.992 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.382 -29.030 -0.674 29.366 hybrid contribution 0.284 1.013 -0.246 1.081 sum 4.666 -28.017 -0.920 28.418 Atomic orbital electron populations 1.69964 1.06053 1.26659 1.50786 1.25049 0.94863 0.99271 0.95421 0.86654 0.79558 0.83171 0.78568 1.20267 1.21324 1.20272 1.21235 0.92979 0.91145 1.50615 0.92734 1.19094 0.94030 0.91226 0.97355 1.21651 0.99151 0.93543 1.00422 1.21578 0.97093 0.92710 1.03229 1.21614 0.99935 0.87801 1.05532 1.24233 0.87611 0.85840 0.71953 1.90674 1.15727 1.87863 1.45022 1.86501 1.41913 1.14850 1.84413 1.22418 0.92200 0.80390 1.02659 1.22133 1.01176 0.88578 1.03183 0.85973 1.23196 1.03008 1.02048 0.90712 1.22347 0.95976 0.96169 1.01167 1.22663 0.93062 0.97804 1.02794 1.23555 0.89188 0.94831 0.95064 1.88941 1.19237 1.74075 1.47313 1.22536 0.89923 0.91288 0.95428 0.92971 0.96563 0.96543 0.93189 0.93188 0.91544 0.91558 0.87839 0.87847 0.90751 0.91018 0.87982 0.87794 0.89716 0.89729 0.91932 0.88692 0.91654 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -1.47 5.81 -27.88 -0.16 -1.64 16 13 C 0.46 6.54 7.96 36.01 0.29 6.83 16 14 O -0.51 -8.72 15.73 -18.75 -0.29 -9.02 16 15 O -0.36 -4.40 10.22 -39.24 -0.40 -4.80 16 16 C 0.10 0.98 5.07 37.15 0.19 1.17 16 17 C -0.13 -1.03 5.96 -90.98 -0.54 -1.57 16 18 H 0.12 0.91 8.14 -51.92 -0.42 0.48 16 19 C -0.15 -0.95 9.95 -27.08 -0.27 -1.22 16 20 C -0.16 -1.07 2.44 -154.68 -0.38 -1.45 16 21 C -0.13 -0.83 6.22 -25.03 -0.16 -0.99 16 22 C 0.05 0.33 7.73 38.32 0.30 0.62 16 23 O -0.38 -3.43 11.53 -35.23 -0.41 -3.83 16 24 C 0.09 0.60 7.50 37.33 0.28 0.88 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 35 H 0.07 0.72 7.87 -51.92 -0.41 0.31 16 36 H 0.10 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.61 7.71 -51.93 -0.40 0.21 16 39 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -33.01 358.89 -8.75 -41.76 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -7.50 Total: -4.66 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.26 Total: -15.03 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.10 Total: -17.65 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.01 -8.75 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884509170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.480 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds