Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48499 * 109.47642 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47395 * 300.00915 * 3 2 1 6 6 H 1.48503 * 109.47034 * 60.00539 * 3 2 1 7 7 C 1.37880 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46942 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46910 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46979 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00383 * 359.97438 * 13 12 11 15 15 O 1.34233 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.45198 * 116.99981 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46893 * 179.97438 * 16 15 13 18 18 H 1.08998 * 115.57469 * 330.81261 * 17 16 15 19 19 C 1.53255 * 117.53161 * 116.73638 * 17 16 15 20 20 C 1.51775 * 117.52884 * 185.00124 * 17 16 15 21 21 C 1.53682 * 122.36490 * 140.86466 * 20 17 16 22 22 C 1.54377 * 103.79525 * 196.96176 * 21 20 17 23 23 O 1.43833 * 107.31274 * 357.25872 * 22 21 20 24 24 C 1.44613 * 107.22800 * 26.12677 * 23 22 21 25 25 H 0.96991 * 119.99926 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47297 * 59.99194 * 9 7 2 27 27 H 1.09007 * 109.46583 * 299.99879 * 9 7 2 28 28 H 1.08993 * 109.47185 * 59.99647 * 10 9 7 29 29 H 1.08999 * 109.46742 * 299.99542 * 10 9 7 30 30 H 1.08993 * 109.47332 * 59.99905 * 11 10 9 31 31 H 1.08999 * 109.47165 * 299.99451 * 11 10 9 32 32 H 1.09007 * 109.47060 * 59.99771 * 12 11 10 33 33 H 1.08999 * 109.46927 * 299.99804 * 12 11 10 34 34 H 1.09005 * 109.47270 * 59.99858 * 16 15 13 35 35 H 1.08990 * 109.47129 * 299.99586 * 16 15 13 36 36 H 1.08998 * 117.52822 * 0.02562 * 19 17 16 37 37 H 1.08997 * 117.53269 * 214.79104 * 19 17 16 38 38 H 1.08992 * 110.55963 * 78.38510 * 21 20 17 39 39 H 1.08997 * 110.55748 * 315.53869 * 21 20 17 40 40 H 1.09006 * 109.87166 * 116.68832 * 22 21 20 41 41 H 1.09001 * 109.87405 * 237.82648 * 22 21 20 42 42 H 1.09005 * 110.64056 * 79.84510 * 24 23 22 43 43 H 1.08996 * 110.64543 * 202.90996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4745 -6.1501 -0.0005 13 6 1.7210 -7.4551 0.0007 14 8 0.5128 -7.4552 0.0025 15 8 2.3922 -8.6176 0.0010 16 6 1.6013 -9.8353 0.0028 17 6 2.5334 -11.0487 0.0021 18 1 3.5000 -10.8992 -0.4788 19 6 2.4818 -11.9822 1.2164 20 6 1.8973 -12.4218 -0.1135 21 6 2.5195 -13.5487 -0.9530 22 6 1.3621 -14.5537 -1.1358 23 8 0.2349 -14.0469 -0.3999 24 6 0.3847 -12.6107 -0.3225 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8898 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.8533 -5.0451 -0.8896 31 1 0.8540 -5.0446 0.8904 32 1 3.1019 -6.0922 0.8890 33 1 3.1005 -6.0924 -0.8910 34 1 0.9715 -9.8609 -0.8865 35 1 0.9736 -9.8595 0.8934 36 1 1.7836 -11.7318 2.0151 37 1 3.4150 -12.4468 1.5348 38 1 3.3479 -14.0122 -0.4174 39 1 2.8519 -13.1678 -1.9186 40 1 1.1075 -14.6375 -2.1924 41 1 1.6524 -15.5286 -0.7442 42 1 0.0634 -12.1402 -1.2519 43 1 -0.1731 -12.2112 0.5244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884509171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = -134.873904 kcal Electronic energy + Delta-G solvation = -21064.102352 eV Core-core repulsion = 17688.293820 eV Total energy + Delta-G solvation = -3375.808532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74132 -40.15078 -37.29624 -36.18252 -34.98338 -32.69536 -31.15352 -30.05652 -28.40520 -27.42807 -25.67771 -23.11028 -22.79682 -21.58349 -20.60837 -20.04709 -19.75583 -17.60198 -16.83510 -16.64028 -16.43504 -16.17052 -16.10385 -15.54120 -15.04812 -14.74909 -14.42077 -13.98166 -13.53231 -13.19185 -12.91280 -12.81266 -12.63923 -12.31728 -11.99940 -11.93093 -11.72153 -11.66732 -11.40614 -11.14871 -11.02794 -10.62350 -10.61701 -10.50577 -10.47426 -10.36543 -10.22085 -10.05958 -9.66137 -9.29663 -9.01584 -8.32647 -5.97250 -3.99765 2.26458 2.46164 3.10643 3.32299 3.39640 3.43579 3.49383 3.83297 4.12219 4.23238 4.35452 4.47787 4.60712 4.70786 4.81646 4.86021 4.97895 5.12283 5.14617 5.20706 5.22519 5.26966 5.27411 5.30216 5.33127 5.38367 5.46264 5.52525 5.64004 5.75757 6.04603 6.18316 6.36272 6.37687 6.46642 6.75691 6.93823 7.15347 7.71685 7.79123 7.86164 8.03654 8.45399 9.08065 9.64129 11.14120 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.059450 B = 0.002007 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.870207 B =13945.548902 C =14193.685912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.505 6.505 15 O -0.359 6.359 16 C 0.095 3.905 17 C -0.132 4.132 18 H 0.123 0.877 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.120 4.120 22 C 0.049 3.951 23 O -0.375 6.375 24 C 0.080 3.920 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.571 -29.048 -0.909 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.392 6.392 15 O -0.276 6.276 16 C 0.021 3.979 17 C -0.150 4.150 18 H 0.140 0.860 19 C -0.185 4.185 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.028 4.028 23 O -0.294 6.294 24 C 0.004 3.996 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.866 -29.103 -0.828 29.700 hybrid contribution 0.507 0.982 -0.130 1.112 sum 6.373 -28.121 -0.958 28.850 Atomic orbital electron populations 1.69982 1.06053 1.26439 1.50977 1.25050 0.94857 0.99291 0.95440 0.86542 0.80079 0.83855 0.77546 1.19760 1.21057 1.21049 1.21312 0.93058 0.91127 1.50343 0.92626 1.19107 0.94047 0.91259 0.97379 1.21649 0.99146 0.93542 1.00423 1.21582 0.97093 0.92703 1.03245 1.21615 0.99936 0.87797 1.05531 1.24235 0.87620 0.85830 0.71969 1.90676 1.15711 1.87848 1.44978 1.86506 1.41873 1.14819 1.84439 1.22448 0.92235 0.80483 1.02727 1.22028 1.01225 0.88296 1.03419 0.85951 1.23118 1.02931 1.01725 0.90776 1.22250 0.96393 0.95692 1.01379 1.22370 0.98625 0.94513 1.00208 1.23190 0.85473 0.97655 0.96487 1.88929 1.44503 1.19907 1.76033 1.22932 0.92462 0.82191 1.02064 0.93081 0.96530 0.96535 0.93187 0.93191 0.91547 0.91531 0.87834 0.87851 0.90754 0.90892 0.87937 0.87844 0.90035 0.89899 0.92128 0.89685 0.91232 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.11 -1.86 4.51 -26.73 -0.12 -1.98 16 12 C -0.11 -1.46 5.81 -27.88 -0.16 -1.62 16 13 C 0.46 6.46 7.96 36.00 0.29 6.75 16 14 O -0.51 -8.64 15.73 -18.75 -0.29 -8.93 16 15 O -0.36 -4.31 10.22 -39.26 -0.40 -4.71 16 16 C 0.09 0.94 5.12 37.16 0.19 1.13 16 17 C -0.13 -1.00 5.98 -91.11 -0.54 -1.54 16 18 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.15 -0.99 9.98 -27.22 -0.27 -1.27 16 20 C -0.16 -1.10 2.39 -154.95 -0.37 -1.47 16 21 C -0.12 -0.68 6.85 -25.66 -0.18 -0.85 16 22 C 0.05 0.31 7.72 37.88 0.29 0.61 16 23 O -0.37 -3.52 11.52 -35.23 -0.41 -3.93 16 24 C 0.08 0.63 6.85 37.60 0.26 0.89 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 35 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.10 0.68 8.04 -51.93 -0.42 0.26 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -33.03 359.74 -8.82 -41.85 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -7.55 Total: -4.84 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.31 Total: -15.02 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.10 Total: -17.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.03 -8.82 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884509171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.028 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds