Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47208 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46971 * 120.00030 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47340 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99957 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00103 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00008 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47008 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.43280 * 55.09125 * 15 14 13 17 17 C 1.53078 * 109.43303 * 174.99541 * 15 14 13 18 18 C 1.53352 * 109.07809 * 179.47536 * 17 15 14 19 19 C 1.52849 * 108.73903 * 305.14972 * 18 17 15 20 20 C 1.53329 * 113.59100 * 184.30792 * 19 18 17 21 21 C 1.53866 * 86.96015 * 89.47662 * 20 19 18 22 22 C 1.53363 * 113.54296 * 282.28770 * 19 18 17 23 23 C 1.52748 * 112.68542 * 53.23125 * 19 18 17 24 24 O 1.42859 * 109.43183 * 295.22908 * 15 14 13 25 25 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46386 * 60.00485 * 9 7 2 27 27 H 1.08999 * 109.47362 * 300.00774 * 9 7 2 28 28 H 1.09000 * 109.46732 * 60.00165 * 10 9 7 29 29 H 1.09000 * 109.46960 * 300.00809 * 10 9 7 30 30 H 1.08999 * 109.47396 * 60.00185 * 14 13 11 31 31 H 1.09002 * 109.47354 * 299.99432 * 14 13 11 32 32 H 1.09003 * 109.53159 * 59.59702 * 17 15 14 33 33 H 1.09000 * 109.54004 * 299.36111 * 17 15 14 34 34 H 1.09003 * 109.58841 * 185.36958 * 18 17 15 35 35 H 1.08997 * 109.71120 * 65.00113 * 18 17 15 36 36 H 1.09001 * 113.63276 * 334.96494 * 20 19 18 37 37 H 1.08992 * 113.71627 * 204.00666 * 20 19 18 38 38 H 1.08999 * 113.60182 * 139.67978 * 21 20 19 39 39 H 1.09002 * 113.60131 * 270.54451 * 21 20 19 40 40 H 1.09004 * 113.62874 * 155.96444 * 22 19 18 41 41 H 1.09000 * 113.63674 * 24.99476 * 22 19 18 42 42 H 1.09001 * 109.52735 * 66.24787 * 23 19 18 43 43 H 1.09002 * 109.52919 * 186.45494 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0024 13 8 2.1629 -6.1296 -0.0031 14 6 1.3722 -7.3474 -0.0043 15 6 2.3043 -8.5608 -0.0055 16 1 2.9917 -8.4909 0.8375 17 6 1.4741 -9.8408 0.1192 18 6 2.4148 -11.0518 0.1040 19 6 3.2800 -10.9857 -1.1543 20 6 4.1934 -12.2038 -1.3357 21 6 3.0348 -12.8544 -2.1113 22 6 2.5467 -11.4297 -2.4260 23 6 4.0045 -9.6490 -1.3015 24 8 3.0491 -8.5867 -1.2242 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5572 0.8896 28 1 2.8725 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 0.7436 -7.3717 -0.8945 31 1 0.7431 -7.3730 0.8855 32 1 0.7798 -9.9080 -0.7184 33 1 0.9166 -9.8240 1.0557 34 1 1.8279 -11.9704 0.0963 35 1 3.0526 -11.0330 0.9876 36 1 4.4342 -12.7123 -0.4021 37 1 5.0725 -12.0051 -1.9487 38 1 3.3568 -13.4099 -2.9921 39 1 2.3503 -13.4207 -1.4796 40 1 2.9693 -11.0151 -3.3413 41 1 1.4642 -11.3159 -2.3686 42 1 4.7354 -9.5406 -0.5001 43 1 4.5116 -9.6136 -2.2657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884516480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -137.060625 kcal Electronic energy + Delta-G solvation = -22069.023487 eV Core-core repulsion = 18693.120131 eV Total energy + Delta-G solvation = -3375.903355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85863 -39.81862 -37.65103 -35.92757 -33.54474 -33.30041 -31.20092 -30.42487 -27.52195 -26.06219 -25.89587 -24.22870 -22.92302 -21.87488 -21.30111 -19.71372 -18.58900 -17.24199 -16.96736 -16.40441 -16.07868 -15.97281 -15.66963 -15.48920 -14.51828 -14.40035 -14.37221 -13.91481 -13.42622 -13.31175 -13.00576 -12.71319 -12.36845 -12.19416 -12.12995 -11.77439 -11.55961 -11.43870 -11.31565 -11.14147 -10.91953 -10.80716 -10.63997 -10.52513 -10.37202 -10.25905 -9.99514 -9.87704 -9.56715 -9.39879 -9.15339 -8.34608 -5.98546 -4.03303 2.89821 3.11141 3.35032 3.39418 3.41834 3.50242 4.18557 4.21579 4.23293 4.45792 4.47737 4.63912 4.65699 4.76518 4.90553 5.05752 5.20007 5.23356 5.32331 5.33203 5.36648 5.39028 5.41247 5.44661 5.52393 5.54987 5.63202 5.64016 5.67953 5.82567 5.94307 6.01953 6.11427 6.18182 6.26262 6.70492 6.99962 7.06725 7.69690 7.77583 8.01462 8.30387 8.47290 9.03693 9.60431 11.12513 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.002572 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.376450 B =10882.306162 C =11167.470908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.509 6.509 13 O -0.359 6.359 14 C 0.072 3.928 15 C 0.094 3.906 16 H 0.068 0.932 17 C -0.147 4.147 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.124 4.124 23 C 0.077 3.923 24 O -0.366 6.366 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 -26.992 -1.160 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.395 6.395 13 O -0.276 6.276 14 C -0.003 4.003 15 C 0.036 3.964 16 H 0.086 0.914 17 C -0.185 4.185 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.167 4.167 21 C -0.180 4.180 22 C -0.162 4.162 23 C 0.000 4.000 24 O -0.284 6.284 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.009 -26.763 -1.307 27.696 hybrid contribution 0.305 0.588 0.198 0.692 sum 7.315 -26.175 -1.109 27.200 Atomic orbital electron populations 1.69980 1.06093 1.26839 1.49942 1.25023 0.94861 0.99319 0.95160 0.86597 0.79499 0.82892 0.78635 1.20156 1.21280 1.20180 1.21131 0.93043 0.90673 1.51786 0.92357 1.19013 0.93238 0.89286 0.98859 1.21748 1.00643 0.87672 1.03986 1.24765 0.87903 0.85755 0.71532 1.90627 1.15930 1.87753 1.45239 1.86593 1.41700 1.14680 1.84675 1.22914 0.92906 0.81377 1.03055 1.22053 0.93216 0.92750 0.88344 0.91402 1.22131 0.98769 0.94124 1.03449 1.21333 0.97342 0.98147 0.96285 1.22256 0.97672 0.95671 0.96470 1.22849 0.97028 0.96120 1.00685 1.22865 0.98189 0.96664 1.00271 1.22865 1.00502 0.95682 0.97105 1.22546 0.90377 0.84911 1.02141 1.88063 1.52848 1.49947 1.37562 0.92814 0.95595 0.95624 0.89030 0.88932 0.90729 0.90077 0.90480 0.90291 0.90999 0.91334 0.91350 0.89887 0.91526 0.90309 0.89890 0.91351 0.93097 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.10 -2.19 5.75 -27.89 -0.16 -2.35 16 11 C 0.46 9.43 7.96 36.00 0.29 9.72 16 12 O -0.51 -11.97 15.73 -18.75 -0.29 -12.26 16 13 O -0.36 -6.35 10.19 -42.10 -0.43 -6.78 16 14 C 0.07 1.03 5.12 37.16 0.19 1.22 16 15 C 0.09 1.08 2.87 -26.69 -0.08 1.01 16 16 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.15 -1.28 5.35 -26.51 -0.14 -1.42 16 18 C -0.09 -0.69 5.11 -26.63 -0.14 -0.82 16 19 C -0.12 -0.92 0.86 -154.36 -0.13 -1.05 16 20 C -0.13 -0.80 7.23 -26.11 -0.19 -0.99 16 21 C -0.14 -0.88 7.73 -25.83 -0.20 -1.08 16 22 C -0.12 -0.94 7.13 -26.10 -0.19 -1.13 16 23 C 0.08 0.72 6.02 37.03 0.22 0.95 16 24 O -0.37 -4.70 10.38 -39.12 -0.41 -5.10 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 27 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 29 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 31 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 37 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.45 7.64 -51.93 -0.40 0.06 16 40 H 0.08 0.64 8.03 -51.93 -0.42 0.23 16 41 H 0.07 0.55 7.61 -51.93 -0.40 0.16 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.80 8.05 -51.93 -0.42 0.39 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -32.94 348.44 -8.65 -41.59 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -7.43 Total: -3.84 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.05 Total: -8.90 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.13 Total: -24.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.94 -8.65 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884516480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.472 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds