Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47208 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46971 * 120.00030 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47340 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99957 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00103 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00008 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47008 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.43280 * 55.09125 * 15 14 13 17 17 C 1.53078 * 109.43303 * 174.99541 * 15 14 13 18 18 C 1.53352 * 109.07809 * 179.47536 * 17 15 14 19 19 C 1.52849 * 108.73903 * 305.14972 * 18 17 15 20 20 C 1.53329 * 113.59100 * 184.30792 * 19 18 17 21 21 C 1.53866 * 86.96015 * 89.47662 * 20 19 18 22 22 C 1.53363 * 113.54296 * 282.28770 * 19 18 17 23 23 C 1.52748 * 112.68542 * 53.23125 * 19 18 17 24 24 O 1.42859 * 109.43183 * 295.22908 * 15 14 13 25 25 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46386 * 60.00485 * 9 7 2 27 27 H 1.08999 * 109.47362 * 300.00774 * 9 7 2 28 28 H 1.09000 * 109.46732 * 60.00165 * 10 9 7 29 29 H 1.09000 * 109.46960 * 300.00809 * 10 9 7 30 30 H 1.08999 * 109.47396 * 60.00185 * 14 13 11 31 31 H 1.09002 * 109.47354 * 299.99432 * 14 13 11 32 32 H 1.09003 * 109.53159 * 59.59702 * 17 15 14 33 33 H 1.09000 * 109.54004 * 299.36111 * 17 15 14 34 34 H 1.09003 * 109.58841 * 185.36958 * 18 17 15 35 35 H 1.08997 * 109.71120 * 65.00113 * 18 17 15 36 36 H 1.09001 * 113.63276 * 334.96494 * 20 19 18 37 37 H 1.08992 * 113.71627 * 204.00666 * 20 19 18 38 38 H 1.08999 * 113.60182 * 139.67978 * 21 20 19 39 39 H 1.09002 * 113.60131 * 270.54451 * 21 20 19 40 40 H 1.09004 * 113.62874 * 155.96444 * 22 19 18 41 41 H 1.09000 * 113.63674 * 24.99476 * 22 19 18 42 42 H 1.09001 * 109.52735 * 66.24787 * 23 19 18 43 43 H 1.09002 * 109.52919 * 186.45494 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0024 13 8 2.1629 -6.1296 -0.0031 14 6 1.3722 -7.3474 -0.0043 15 6 2.3043 -8.5608 -0.0055 16 1 2.9917 -8.4909 0.8375 17 6 1.4741 -9.8408 0.1192 18 6 2.4148 -11.0518 0.1040 19 6 3.2800 -10.9857 -1.1543 20 6 4.1934 -12.2038 -1.3357 21 6 3.0348 -12.8544 -2.1113 22 6 2.5467 -11.4297 -2.4260 23 6 4.0045 -9.6490 -1.3015 24 8 3.0491 -8.5867 -1.2242 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5572 0.8896 28 1 2.8725 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 0.7436 -7.3717 -0.8945 31 1 0.7431 -7.3730 0.8855 32 1 0.7798 -9.9080 -0.7184 33 1 0.9166 -9.8240 1.0557 34 1 1.8279 -11.9704 0.0963 35 1 3.0526 -11.0330 0.9876 36 1 4.4342 -12.7123 -0.4021 37 1 5.0725 -12.0051 -1.9487 38 1 3.3568 -13.4099 -2.9921 39 1 2.3503 -13.4207 -1.4796 40 1 2.9693 -11.0151 -3.3413 41 1 1.4642 -11.3159 -2.3686 42 1 4.7354 -9.5406 -0.5001 43 1 4.5116 -9.6136 -2.2657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884516480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -155.566786 kcal Electronic energy + Delta-G solvation = -22069.825974 eV Core-core repulsion = 18693.120131 eV Total energy + Delta-G solvation = -3376.705843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68829 -41.24611 -38.54426 -37.39313 -35.64880 -34.12095 -33.15632 -31.33126 -28.61951 -27.66104 -26.58474 -25.18699 -24.08185 -23.32901 -22.07236 -21.39349 -19.30679 -18.99042 -18.16334 -17.98325 -17.34462 -17.07149 -16.58689 -16.48707 -16.47951 -15.55239 -15.22681 -14.95266 -14.47460 -14.42487 -14.21282 -13.80976 -13.73263 -13.54273 -13.24317 -13.13346 -12.79342 -12.59783 -12.49362 -12.22438 -12.08739 -12.00211 -11.91812 -11.79067 -11.75677 -11.46534 -11.42325 -11.27130 -11.08620 -10.93358 -10.56919 -10.21100 -8.19700 -6.33757 1.23192 1.43186 1.47902 1.55323 1.69143 2.43560 2.66741 3.13752 3.54445 3.61459 3.63992 3.75021 3.86344 3.95343 3.99143 4.07666 4.13324 4.29858 4.35647 4.45002 4.47660 4.48243 4.59459 4.64217 4.73577 4.78660 4.85731 4.88997 4.93426 5.01944 5.06456 5.07928 5.16388 5.29085 5.37447 5.45140 5.47019 5.54859 5.58405 5.80394 6.13214 6.24211 6.78541 6.86101 7.36340 8.92864 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.002572 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.376450 B =10882.306162 C =11167.470908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.094 4.094 11 C 0.465 3.535 12 O -0.546 6.546 13 O -0.353 6.353 14 C 0.064 3.936 15 C 0.099 3.901 16 H 0.076 0.924 17 C -0.142 4.142 18 C -0.091 4.091 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.132 4.132 23 C 0.071 3.929 24 O -0.396 6.396 25 H 0.264 0.736 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.762 -28.107 -0.675 29.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.131 4.131 11 C 0.310 3.690 12 O -0.436 6.436 13 O -0.269 6.269 14 C -0.010 4.010 15 C 0.041 3.959 16 H 0.094 0.906 17 C -0.180 4.180 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.160 4.160 21 C -0.174 4.174 22 C -0.169 4.169 23 C -0.005 4.005 24 O -0.315 6.315 25 H 0.073 0.927 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.226 -27.917 -0.823 29.413 hybrid contribution -0.389 0.851 0.015 0.936 sum 8.837 -27.066 -0.808 28.483 Atomic orbital electron populations 1.70150 1.08243 1.28033 1.51147 1.26119 0.95761 1.03916 0.94470 0.85344 0.78036 0.77203 0.79496 1.18771 1.21253 1.18645 1.21615 0.94100 0.91287 1.51309 0.90468 1.18793 0.93654 0.91937 0.95437 1.21510 0.99362 0.86118 1.06150 1.24521 0.87153 0.86605 0.70708 1.90617 1.17450 1.88372 1.47121 1.86557 1.41682 1.14850 1.83856 1.23291 0.93723 0.80824 1.03129 1.22079 0.93203 0.92362 0.88277 0.90643 1.22115 0.98685 0.93250 1.03940 1.21353 0.97229 0.97808 0.96416 1.22277 0.98087 0.95230 0.96629 1.22833 0.96924 0.95038 1.01197 1.22850 0.98128 0.95779 1.00599 1.22897 0.99964 0.97047 0.96998 1.22737 0.90094 0.84996 1.02654 1.88008 1.53765 1.51620 1.38153 0.92717 0.99321 0.99047 0.86506 0.86931 0.91821 0.88978 0.91202 0.88806 0.89638 0.90374 0.90391 0.89434 0.90982 0.89609 0.90533 0.92210 0.92468 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.29 21.45 0.28 -58.66 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 44.22 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.17 4.26 29.85 0.13 2.30 16 10 C -0.09 -3.97 5.75 29.85 0.17 -3.80 16 11 C 0.46 19.36 7.96 71.23 0.57 19.92 16 12 O -0.55 -26.52 15.73 21.96 0.35 -26.17 16 13 O -0.35 -12.32 10.19 -48.66 -0.50 -12.81 16 14 C 0.06 1.82 5.12 71.99 0.37 2.19 16 15 C 0.10 2.16 2.87 30.62 0.09 2.25 16 16 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.14 -2.25 5.35 30.74 0.16 -2.09 16 18 C -0.09 -1.12 5.11 30.66 0.16 -0.96 16 19 C -0.12 -1.65 0.86 -52.08 -0.04 -1.70 16 20 C -0.12 -1.23 7.23 31.00 0.22 -1.00 16 21 C -0.14 -1.40 7.73 31.17 0.24 -1.15 16 22 C -0.13 -1.86 7.13 31.01 0.22 -1.64 16 23 C 0.07 1.25 6.02 71.90 0.43 1.68 16 24 O -0.40 -9.91 10.38 -145.26 -1.51 -11.41 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H -0.01 -0.72 8.10 -2.38 -0.02 -0.74 16 27 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 28 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 29 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 30 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 32 H 0.07 1.21 7.66 -2.39 -0.02 1.20 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 0.85 7.34 -2.39 -0.02 0.84 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 37 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.77 7.64 -2.39 -0.02 0.75 16 40 H 0.08 1.15 8.03 -2.38 -0.02 1.14 16 41 H 0.06 0.93 7.61 -2.39 -0.02 0.91 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 1.59 8.05 -2.39 -0.02 1.57 16 Total: -1.00 -72.43 348.44 5.03 -67.40 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.97 Total: 10.03 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.41 Total: -14.61 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.28 Total: -58.66 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.66 Total: -50.40 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.43 5.03 -67.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884516480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.166 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds