Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47380 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47125 * 119.99874 * 3 2 1 7 7 C 1.37877 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46954 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46829 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46951 * 179.97438 * 11 10 9 13 13 O 1.20819 * 119.99913 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99802 * 180.02562 * 12 11 10 15 15 C 1.45201 * 116.99941 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47208 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.53783 * 56.35992 * 16 15 14 18 18 C 1.55296 * 110.75504 * 179.15082 * 16 15 14 19 19 C 1.54974 * 102.00827 * 155.14917 * 18 16 15 20 20 C 1.53518 * 104.01781 * 339.29119 * 19 18 16 21 21 C 1.53137 * 114.90950 * 227.98612 * 20 19 18 22 22 C 1.53896 * 86.90253 * 218.43943 * 21 20 19 23 23 C 1.53150 * 114.88432 * 128.36695 * 20 19 18 24 24 O 1.43070 * 108.05922 * 358.20166 * 20 19 18 25 25 H 0.97002 * 119.99596 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47094 * 60.00218 * 9 7 2 27 27 H 1.09006 * 109.47097 * 300.00034 * 9 7 2 28 28 H 1.08997 * 109.47213 * 60.00082 * 10 9 7 29 29 H 1.08996 * 109.47048 * 299.99646 * 10 9 7 30 30 H 1.08997 * 109.47148 * 60.00052 * 11 10 9 31 31 H 1.09003 * 109.47671 * 299.99803 * 11 10 9 32 32 H 1.08999 * 109.47363 * 59.99037 * 15 14 12 33 33 H 1.09004 * 109.46583 * 299.99651 * 15 14 12 34 34 H 1.09007 * 110.85220 * 37.06315 * 18 16 15 35 35 H 1.08995 * 110.99942 * 273.30452 * 18 16 15 36 36 H 1.09002 * 110.54632 * 220.61610 * 19 18 16 37 37 H 1.09003 * 110.54399 * 97.96428 * 19 18 16 38 38 H 1.09001 * 113.64657 * 332.94115 * 21 20 19 39 39 H 1.09004 * 113.64767 * 103.93779 * 21 20 19 40 40 H 1.08995 * 113.59853 * 270.38602 * 22 21 20 41 41 H 1.09000 * 113.66733 * 139.55078 * 22 21 20 42 42 H 1.08998 * 113.65068 * 256.08459 * 23 20 19 43 43 H 1.09000 * 113.64695 * 26.99024 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4594 -6.1326 -0.0005 13 8 3.6472 -5.9119 -0.0009 14 8 2.0118 -7.3981 -0.0006 15 6 3.0118 -8.4509 -0.0007 16 6 2.3172 -9.8140 -0.0002 17 1 1.6395 -9.8982 -0.8497 18 6 3.3610 -10.9636 -0.0217 19 6 2.5681 -12.1312 0.6185 20 6 1.4391 -11.4344 1.3910 21 6 1.2478 -11.9196 2.8308 22 6 -0.2653 -11.7760 2.5897 23 6 0.0327 -11.9614 1.0913 24 8 1.6052 -10.0214 1.2406 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8894 29 1 2.8717 -3.6044 -0.8905 30 1 0.8531 -5.0450 -0.8896 31 1 0.8537 -5.0446 0.8903 32 1 3.6347 -8.3605 0.8892 33 1 3.6345 -8.3604 -0.8907 34 1 4.2319 -10.7084 0.5822 35 1 3.6533 -11.2068 -1.0432 36 1 3.2040 -12.6978 1.2988 37 1 2.1581 -12.7834 -0.1527 38 1 1.5691 -12.9486 2.9918 39 1 1.6384 -11.2306 3.5798 40 1 -0.6551 -10.7889 2.8383 41 1 -0.8557 -12.5847 3.0205 42 1 -0.5513 -11.3060 0.4452 43 1 0.0156 -13.0016 0.7661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = -133.617861 kcal Electronic energy + Delta-G solvation = -21721.730458 eV Core-core repulsion = 18345.976392 eV Total energy + Delta-G solvation = -3375.754066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86889 -40.09945 -37.06115 -36.01464 -34.26891 -32.61214 -32.09905 -30.21131 -28.05489 -26.13169 -25.50585 -23.95864 -22.34135 -21.60869 -21.01419 -19.75331 -19.64625 -17.44829 -17.03419 -16.61308 -16.16486 -16.11566 -15.80381 -15.16364 -14.77110 -14.40133 -14.14175 -13.91846 -13.54531 -13.13166 -12.77141 -12.72382 -12.37933 -12.14365 -12.04953 -11.97723 -11.72112 -11.39428 -11.28044 -11.10698 -10.83713 -10.79379 -10.66291 -10.65021 -10.57497 -10.42931 -10.14535 -9.79778 -9.70392 -9.36873 -9.08052 -8.31995 -5.97574 -3.99479 2.53998 2.79976 3.28484 3.36873 3.40444 3.44015 4.06239 4.15147 4.28496 4.45814 4.49483 4.52806 4.62771 4.72734 4.84603 4.95649 5.04296 5.15651 5.27281 5.30690 5.36518 5.38380 5.44145 5.45689 5.52555 5.62284 5.65881 5.67546 5.74467 5.75309 5.94164 5.99373 6.14637 6.61186 6.65511 6.72899 6.85418 7.10500 7.69184 7.81454 8.02252 8.06708 8.45151 9.07069 9.64400 11.13903 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034919 B = 0.002485 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.660120 B =11266.620404 C =11774.868343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.511 6.511 14 O -0.355 6.355 15 C 0.072 3.928 16 C 0.079 3.921 17 H 0.082 0.918 18 C -0.148 4.148 19 C -0.138 4.138 20 C 0.079 3.921 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.155 4.155 24 O -0.337 6.337 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -28.881 1.242 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.398 6.398 14 O -0.272 6.272 15 C -0.002 4.002 16 C 0.022 3.978 17 H 0.100 0.900 18 C -0.186 4.186 19 C -0.176 4.176 20 C 0.038 3.962 21 C -0.171 4.171 22 C -0.173 4.173 23 C -0.193 4.193 24 O -0.256 6.256 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.285 -28.557 1.389 28.682 hybrid contribution 0.633 0.731 -0.163 0.981 sum 2.918 -27.826 1.226 28.006 Atomic orbital electron populations 1.69954 1.06037 1.26720 1.50903 1.25019 0.94869 0.99264 0.95327 0.86634 0.79555 0.83015 0.78669 1.20226 1.21308 1.20225 1.21207 0.93137 0.90943 1.50559 0.92600 1.19124 0.93894 0.91138 0.97444 1.21576 0.98943 0.91264 1.01933 1.21692 0.97329 0.90581 1.05297 1.24433 0.90141 0.83376 0.71582 1.90633 1.18547 1.85159 1.45470 1.86586 1.40338 1.15924 1.84397 1.22982 0.90086 0.83897 1.03279 1.23269 0.93111 0.92881 0.88563 0.89980 1.23170 0.98600 0.94334 1.02456 1.22818 0.96887 0.97960 0.99914 1.22699 0.94370 0.82242 0.96846 1.23091 0.96984 1.01368 0.95631 1.22802 0.96056 1.02488 0.95998 1.23408 0.96692 1.01386 0.97768 1.88892 1.76749 1.20561 1.39375 0.92949 0.96348 0.96339 0.92453 0.92464 0.88116 0.88040 0.90538 0.89817 0.89963 0.89577 0.90049 0.90235 0.89047 0.90465 0.89613 0.91389 0.90636 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 11 C -0.11 -1.94 5.81 -27.88 -0.16 -2.10 16 12 C 0.46 7.99 7.96 36.01 0.29 8.28 16 13 O -0.51 -10.09 15.73 -18.74 -0.29 -10.39 16 14 O -0.36 -5.45 10.22 -40.77 -0.42 -5.87 16 15 C 0.07 0.88 5.22 37.15 0.19 1.07 16 16 C 0.08 0.80 3.64 -25.52 -0.09 0.71 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.15 -1.06 6.63 -24.47 -0.16 -1.22 16 19 C -0.14 -0.91 6.47 -25.42 -0.16 -1.07 16 20 C 0.08 0.69 1.38 -90.21 -0.12 0.56 16 21 C -0.13 -1.03 7.47 -26.19 -0.20 -1.23 16 22 C -0.14 -1.07 8.08 -25.80 -0.21 -1.28 16 23 C -0.15 -1.20 7.47 -26.19 -0.20 -1.40 16 24 O -0.34 -4.07 10.98 -35.55 -0.39 -4.46 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.08 0.58 8.06 -51.92 -0.42 0.17 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 37 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 38 H 0.09 0.53 8.11 -51.93 -0.42 0.10 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -32.99 355.19 -9.06 -42.06 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -7.54 Total: -3.92 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.49 Total: -13.38 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.10 Total: -20.72 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.99 -9.06 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.561 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds