Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99865 * 359.97438 * 12 11 10 14 14 O 1.34224 * 119.99877 * 179.97438 * 12 11 10 15 15 C 1.45201 * 116.99991 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47245 * 180.02562 * 15 14 12 17 17 H 1.08995 * 110.30056 * 305.70145 * 16 15 14 18 18 C 1.54549 * 110.33110 * 183.54729 * 16 15 14 19 19 C 1.54723 * 104.07057 * 217.44627 * 18 16 15 20 20 C 1.53549 * 103.75286 * 0.70269 * 19 18 16 21 21 C 1.52814 * 115.46637 * 253.20092 * 20 19 18 22 22 C 1.53953 * 86.79337 * 217.65938 * 21 20 19 23 23 C 1.52810 * 115.48648 * 152.49339 * 20 19 18 24 24 O 1.43441 * 106.20028 * 22.75326 * 20 19 18 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.09003 * 109.47171 * 300.00532 * 15 14 12 33 33 H 1.08998 * 109.47035 * 60.00238 * 15 14 12 34 34 H 1.08996 * 110.51385 * 336.09908 * 18 16 15 35 35 H 1.09008 * 110.50584 * 98.80508 * 18 16 15 36 36 H 1.09002 * 110.56359 * 119.27267 * 19 18 16 37 37 H 1.08994 * 110.57083 * 242.13145 * 19 18 16 38 38 H 1.08999 * 113.66004 * 332.13409 * 21 20 19 39 39 H 1.09002 * 113.65824 * 103.18263 * 21 20 19 40 40 H 1.09000 * 113.58595 * 270.11966 * 22 21 20 41 41 H 1.08999 * 113.65933 * 139.31099 * 22 21 20 42 42 H 1.08995 * 113.65733 * 256.79546 * 23 20 19 43 43 H 1.08996 * 113.65934 * 27.75139 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6472 -5.9119 -0.0199 14 8 2.0118 -7.3980 -0.0270 15 6 3.0118 -8.4508 -0.0316 16 6 2.3171 -9.8140 -0.0382 17 1 1.6136 -9.8840 0.7913 18 6 3.3620 -10.9496 0.0465 19 6 2.7915 -12.0551 -0.8735 20 6 1.4886 -11.4461 -1.4113 21 6 0.2016 -12.0280 -0.8281 22 6 -0.4002 -11.8837 -2.2378 23 6 1.0392 -11.9578 -2.7792 24 8 1.6340 -10.0238 -1.2955 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 3.6347 -8.3565 -0.9211 33 1 3.6344 -8.3643 0.8588 34 1 4.3289 -10.6072 -0.3221 35 1 3.4493 -11.3125 1.0707 36 1 3.4812 -12.2669 -1.6905 37 1 2.5842 -12.9597 -0.3019 38 1 0.2993 -13.0622 -0.4980 39 1 -0.2701 -11.3869 -0.0833 40 1 -0.8819 -10.9211 -2.4099 41 1 -1.0224 -12.7274 -2.5363 42 1 1.2367 -11.2607 -3.5935 43 1 1.3739 -12.9717 -2.9985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -133.560584 kcal Electronic energy + Delta-G solvation = -21735.773972 eV Core-core repulsion = 18360.022390 eV Total energy + Delta-G solvation = -3375.751582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93512 -40.10352 -37.05029 -36.00357 -34.26930 -32.62722 -32.09841 -30.24262 -28.06681 -26.21567 -25.45114 -23.95609 -22.51977 -21.44470 -21.02522 -19.75221 -19.63857 -17.45025 -16.90615 -16.64081 -16.19419 -16.07989 -15.91267 -15.25120 -14.88707 -14.40005 -14.14724 -13.92219 -13.36805 -13.12947 -12.78214 -12.74052 -12.36595 -12.14560 -12.02050 -11.97021 -11.75358 -11.39544 -11.32450 -11.13430 -10.82049 -10.79390 -10.66990 -10.65393 -10.57517 -10.44154 -10.14640 -9.85223 -9.70388 -9.36930 -9.08087 -8.32005 -5.97612 -3.99494 2.53973 2.80830 3.30911 3.36851 3.40417 3.43997 4.05885 4.15644 4.28323 4.46077 4.49190 4.54130 4.60435 4.72844 4.84396 4.96973 5.02141 5.16338 5.27626 5.28192 5.38332 5.39039 5.42137 5.45161 5.53862 5.60201 5.65440 5.67186 5.71871 5.75451 5.91577 5.97749 6.14632 6.60882 6.65422 6.67116 6.85398 7.10479 7.69167 7.81416 8.02212 8.06683 8.45115 9.07048 9.64355 11.13856 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.002481 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.149453 B =11285.307333 C =11789.505753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.511 6.511 14 O -0.356 6.356 15 C 0.071 3.929 16 C 0.079 3.921 17 H 0.082 0.918 18 C -0.148 4.148 19 C -0.137 4.137 20 C 0.076 3.924 21 C -0.156 4.156 22 C -0.136 4.136 23 C -0.129 4.129 24 O -0.335 6.335 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -28.968 -1.223 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.398 6.398 14 O -0.273 6.273 15 C -0.003 4.003 16 C 0.021 3.979 17 H 0.099 0.901 18 C -0.186 4.186 19 C -0.175 4.175 20 C 0.036 3.964 21 C -0.194 4.194 22 C -0.173 4.173 23 C -0.166 4.166 24 O -0.254 6.254 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.201 -28.640 -1.375 28.757 hybrid contribution 0.661 0.759 0.176 1.022 sum 2.862 -27.881 -1.198 28.053 Atomic orbital electron populations 1.69955 1.06037 1.26720 1.50900 1.25021 0.94869 0.99266 0.95326 0.86635 0.79554 0.83011 0.78670 1.20225 1.21307 1.20224 1.21209 0.93137 0.90941 1.50561 0.92599 1.19122 0.93895 0.91139 0.97444 1.21576 0.98943 0.91264 1.01935 1.21690 0.97329 0.90584 1.05293 1.24433 0.90143 0.83375 0.71583 1.90635 1.18545 1.85163 1.45470 1.86581 1.40378 1.15944 1.84394 1.23036 0.90091 0.83955 1.03249 1.23065 0.93710 0.92909 0.88237 0.90058 1.22936 0.99404 0.95030 1.01224 1.22751 0.96810 0.98423 0.99507 1.22704 0.93736 0.82289 0.97652 1.23352 0.96755 1.01353 0.97928 1.22838 0.96142 1.02574 0.95790 1.22918 0.96356 1.01374 0.95961 1.89105 1.78089 1.20246 1.37939 0.92949 0.96355 0.96331 0.92456 0.92461 0.88117 0.88041 0.90517 0.89862 0.90116 0.89830 0.90236 0.90153 0.89312 0.90640 0.89583 0.91298 0.90334 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.15 4.44 -26.74 -0.12 -2.27 16 11 C -0.11 -1.94 5.81 -27.88 -0.16 -2.11 16 12 C 0.46 8.01 7.96 36.01 0.29 8.29 16 13 O -0.51 -10.12 15.73 -18.75 -0.29 -10.42 16 14 O -0.36 -5.47 10.22 -40.46 -0.41 -5.89 16 15 C 0.07 0.88 5.06 37.16 0.19 1.06 16 16 C 0.08 0.80 3.59 -25.92 -0.09 0.71 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.15 -1.08 6.65 -25.01 -0.17 -1.24 16 19 C -0.14 -0.93 6.48 -25.54 -0.17 -1.09 16 20 C 0.08 0.66 1.13 -90.54 -0.10 0.56 16 21 C -0.16 -1.17 7.57 -26.33 -0.20 -1.37 16 22 C -0.14 -1.04 8.09 -25.74 -0.21 -1.25 16 23 C -0.13 -0.98 7.61 -26.33 -0.20 -1.18 16 24 O -0.33 -4.05 11.13 -35.32 -0.39 -4.45 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 33 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 35 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.08 0.41 7.84 -51.93 -0.41 0.01 16 38 H 0.09 0.51 7.97 -51.93 -0.41 0.09 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -33.01 355.02 -9.05 -42.07 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.53 Total: -3.96 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.49 Total: -13.31 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.10 Total: -20.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.01 -9.05 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.494 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds