Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00430 * 2 1 4 4 H 1.48501 * 109.46734 * 270.00261 * 3 2 1 5 5 H 1.48496 * 109.46880 * 29.99872 * 3 2 1 6 6 H 1.48497 * 109.47255 * 149.99854 * 3 2 1 7 7 C 1.37879 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00160 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46828 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46704 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00358 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99677 * 179.97438 * 12 11 10 15 15 C 1.45206 * 117.00175 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47266 * 180.02562 * 15 14 12 17 17 H 1.08996 * 110.28244 * 52.90616 * 16 15 14 18 18 C 1.54945 * 110.31067 * 175.00212 * 16 15 14 19 19 C 1.55304 * 100.94610 * 155.45520 * 18 16 15 20 20 C 1.54382 * 102.25133 * 325.86612 * 19 18 16 21 21 H 1.09002 * 109.83024 * 261.84108 * 20 19 18 22 22 C 1.53000 * 109.83109 * 140.95964 * 20 19 18 23 23 C 1.52994 * 117.50148 * 248.93242 * 22 20 19 24 24 C 1.52997 * 117.49844 * 180.27384 * 22 20 19 25 25 O 1.43233 * 107.66464 * 21.40268 * 20 19 18 26 26 H 0.97005 * 119.99333 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46900 * 60.00129 * 9 7 2 28 28 H 1.08998 * 109.47478 * 300.00122 * 9 7 2 29 29 H 1.09000 * 109.47347 * 60.00219 * 10 9 7 30 30 H 1.08999 * 109.47167 * 299.99314 * 10 9 7 31 31 H 1.08991 * 109.47215 * 59.99880 * 11 10 9 32 32 H 1.09002 * 109.47234 * 299.99337 * 11 10 9 33 33 H 1.09003 * 109.47025 * 59.99659 * 15 14 12 34 34 H 1.08998 * 109.46333 * 299.99940 * 15 14 12 35 35 H 1.09003 * 111.12795 * 37.53317 * 18 16 15 36 36 H 1.09007 * 111.12129 * 273.37535 * 18 16 15 37 37 H 1.08993 * 110.85020 * 207.67479 * 19 18 16 38 38 H 1.09002 * 110.84684 * 84.05597 * 19 18 16 39 39 H 1.09005 * 115.54655 * 34.60078 * 22 20 19 40 40 H 1.09006 * 117.49500 * 359.97438 * 23 22 20 41 41 H 1.08999 * 117.50502 * 145.01737 * 23 22 20 42 42 H 1.09006 * 117.49357 * 214.98333 * 24 22 20 43 43 H 1.08992 * 117.50116 * 359.97176 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0537 -4.0576 0.0009 13 8 5.2685 -4.9760 0.0018 14 8 7.3733 -4.3029 0.0005 15 6 7.7851 -5.6954 0.0007 16 6 9.3129 -5.7755 0.0009 17 1 9.7224 -5.1794 0.8164 18 6 9.7742 -7.2492 0.1277 19 6 11.1832 -7.1741 -0.5209 20 6 10.9818 -6.1080 -1.6193 21 1 10.8090 -6.5943 -2.5793 22 6 12.2193 -5.2125 -1.7066 23 6 12.0732 -3.7592 -1.2511 24 6 12.2040 -4.0852 -2.7409 25 8 9.8388 -5.3235 -1.2591 26 1 -0.4849 0.8401 -0.0004 27 1 3.8751 -0.6797 0.8895 28 1 3.8745 -0.6809 -0.8905 29 1 3.6577 -3.1507 -0.8897 30 1 3.6585 -3.1503 0.8904 31 1 5.9147 -2.1228 0.8900 32 1 5.9148 -2.1230 -0.8900 33 1 7.3950 -6.1897 -0.8890 34 1 7.3955 -6.1892 0.8910 35 1 9.1186 -7.9157 -0.4329 36 1 9.8384 -7.5522 1.1729 37 1 11.4609 -8.1333 -0.9577 38 1 11.9276 -6.8472 0.2051 39 1 13.1717 -5.7067 -1.5147 40 1 11.0953 -3.4410 -0.8896 41 1 12.9296 -3.2971 -0.7600 42 1 13.1465 -3.8376 -3.2294 43 1 11.3126 -3.9819 -3.3595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -128.418579 kcal Electronic energy + Delta-G solvation = -21720.521884 eV Core-core repulsion = 18344.993276 eV Total energy + Delta-G solvation = -3375.528608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54910 -39.93804 -36.96186 -36.21100 -34.39287 -32.63653 -32.15332 -31.13786 -28.69348 -26.51434 -24.06183 -22.71945 -22.52828 -21.84031 -20.85922 -20.28214 -19.83537 -17.65703 -17.26400 -16.82603 -16.46895 -16.38327 -15.81639 -15.44107 -14.99130 -14.35167 -14.18076 -13.77342 -13.57454 -12.95765 -12.82944 -12.68817 -12.38803 -12.17562 -12.01493 -11.89959 -11.74991 -11.67099 -11.58944 -11.29799 -11.00893 -10.79592 -10.64394 -10.56038 -10.31852 -10.28660 -9.93660 -9.81641 -9.74031 -9.64033 -9.16234 -8.51124 -6.00970 -3.99193 2.47552 2.74956 3.31693 3.33137 3.40321 3.43359 3.50584 4.02435 4.24531 4.33057 4.47624 4.62418 4.62746 4.73271 4.85048 4.87471 4.97173 5.04977 5.10191 5.23400 5.25951 5.29640 5.32381 5.45322 5.46081 5.52068 5.54758 5.61655 5.67011 5.75288 5.88353 6.00498 6.03447 6.49479 6.53296 6.63647 6.72389 6.88083 7.33138 7.42383 7.81152 8.00375 8.57843 9.05041 9.60837 11.12573 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.002755 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.738971 B =10161.652450 C =11001.635016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.114 4.114 12 C 0.460 3.540 13 O -0.508 6.508 14 O -0.355 6.355 15 C 0.067 3.933 16 C 0.084 3.916 17 H 0.083 0.917 18 C -0.149 4.149 19 C -0.145 4.145 20 C 0.106 3.894 21 H 0.084 0.916 22 C -0.177 4.177 23 C -0.167 4.167 24 C -0.174 4.174 25 O -0.360 6.360 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.013 0.987 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.401 -13.568 -0.932 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.152 4.152 12 C 0.304 3.696 13 O -0.395 6.395 14 O -0.273 6.273 15 C -0.007 4.007 16 C 0.026 3.974 17 H 0.101 0.899 18 C -0.187 4.187 19 C -0.183 4.183 20 C 0.049 3.951 21 H 0.102 0.898 22 C -0.195 4.195 23 C -0.203 4.203 24 C -0.211 4.211 25 O -0.280 6.280 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 27.938 -13.590 -1.052 31.086 hybrid contribution 0.470 0.562 0.075 0.737 sum 28.409 -13.028 -0.977 31.269 Atomic orbital electron populations 1.69923 1.06323 1.26841 1.51204 1.25047 0.94755 0.99189 0.94615 0.86760 0.80348 0.83559 0.78498 1.20284 1.21434 1.18942 1.21133 0.89399 0.94587 1.50697 0.90919 1.19599 0.97390 0.91715 0.96426 1.21392 0.88609 1.00188 1.02784 1.21698 0.99750 0.88506 1.05224 1.24307 0.79744 0.93760 0.71788 1.90654 1.56566 1.47059 1.45227 1.86568 1.26841 1.29481 1.84380 1.23130 0.93303 0.81108 1.03187 1.23021 0.91896 0.94544 0.87934 0.89928 1.23241 0.96751 0.95938 1.02773 1.23121 0.97375 0.99634 0.98129 1.22208 0.84911 0.89938 0.98085 0.89829 1.22751 0.98711 0.91381 1.06642 1.22918 1.03730 0.96498 0.97197 1.22918 1.03041 1.02581 0.92558 1.88582 1.44234 1.57802 1.37370 0.92758 0.96402 0.96825 0.91848 0.91845 0.88138 0.88072 0.90603 0.89989 0.89792 0.89257 0.89720 0.90031 0.87327 0.87447 0.89305 0.89131 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.90 4.44 -26.73 -0.12 -2.01 16 11 C -0.11 -1.85 5.81 -27.88 -0.16 -2.01 16 12 C 0.46 7.60 7.96 36.01 0.29 7.89 16 13 O -0.51 -9.77 15.73 -18.75 -0.29 -10.06 16 14 O -0.36 -5.14 10.22 -40.19 -0.41 -5.55 16 15 C 0.07 0.77 5.18 37.15 0.19 0.97 16 16 C 0.08 0.77 3.73 -25.71 -0.10 0.68 16 17 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.15 -0.94 6.57 -24.48 -0.16 -1.10 16 19 C -0.15 -0.83 6.53 -24.79 -0.16 -0.99 16 20 C 0.11 0.84 3.88 -26.01 -0.10 0.74 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.18 -1.33 5.56 -90.62 -0.50 -1.83 16 23 C -0.17 -1.42 9.88 -26.70 -0.26 -1.69 16 24 C -0.17 -1.42 10.22 -26.70 -0.27 -1.69 16 25 O -0.36 -3.91 9.11 -35.24 -0.32 -4.23 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 28 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 29 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.08 0.51 8.06 -51.93 -0.42 0.10 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 39 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.11 1.12 7.07 -51.93 -0.37 0.75 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -33.45 354.08 -8.95 -42.39 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -7.46 Total: -2.30 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.90 Total: -15.16 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.57 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.03 Total: -19.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.45 -8.95 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.024 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds