Wall clock time and date at job start Tue Mar 31 2020 06:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99675 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00316 * 180.02562 * 12 11 10 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46910 * 179.97438 * 15 14 12 17 17 H 1.09009 * 110.33132 * 55.79654 * 16 15 14 18 18 C 1.54482 * 110.36989 * 178.16155 * 16 15 14 19 19 C 1.54512 * 104.06032 * 142.81204 * 18 16 15 20 20 C 1.54480 * 104.06112 * 0.02562 * 19 18 16 21 21 H 1.09002 * 110.36973 * 94.85416 * 20 19 18 22 22 C 1.53005 * 110.37167 * 217.18742 * 20 19 18 23 23 C 1.52993 * 117.49923 * 245.58410 * 22 20 19 24 24 C 1.52996 * 117.49881 * 176.92508 * 22 20 19 25 25 O 1.44420 * 104.80885 * 336.02112 * 20 19 18 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 34 34 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 35 35 H 1.08999 * 110.51427 * 261.45699 * 18 16 15 36 36 H 1.08996 * 110.51161 * 24.16784 * 18 16 15 37 37 H 1.09003 * 110.50908 * 241.35591 * 19 18 16 38 38 H 1.09002 * 110.62968 * 118.70215 * 19 18 16 39 39 H 1.09000 * 115.54715 * 31.25518 * 22 20 19 40 40 H 1.08995 * 117.50370 * 0.02562 * 23 22 20 41 41 H 1.09008 * 117.49677 * 145.02159 * 23 22 20 42 42 H 1.09000 * 117.49716 * 214.98681 * 24 22 20 43 43 H 1.09001 * 117.49945 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6475 -5.9118 -0.0001 14 8 2.0121 -7.3981 -0.0015 15 6 3.0121 -8.4509 -0.0002 16 6 2.3175 -9.8141 -0.0009 17 1 1.6345 -9.8907 -0.8471 18 6 3.3630 -10.9504 -0.0460 19 6 2.7636 -12.0483 0.8609 20 6 1.4265 -11.4457 1.3461 21 1 0.6076 -11.7749 0.7063 22 6 1.1603 -11.8415 2.7999 23 6 -0.0400 -12.7490 3.0765 24 6 -0.0912 -11.2705 3.4697 25 8 1.6051 -10.0166 1.2388 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.6361 -8.3603 -0.8893 34 1 3.6336 -8.3606 0.8907 35 1 3.4823 -11.3194 -1.0646 36 1 4.3181 -10.6065 0.3509 37 1 3.4224 -12.2472 1.7062 38 1 2.5866 -12.9615 0.2927 39 1 2.0464 -11.9758 3.4203 40 1 -0.6398 -13.0644 2.2229 41 1 0.0563 -13.4801 3.8793 42 1 -0.0286 -11.0295 4.5308 43 1 -0.7247 -10.6126 2.8748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:49 Heat of formation + Delta-G solvation = -132.144118 kcal Electronic energy + Delta-G solvation = -21466.416417 eV Core-core repulsion = 18090.726257 eV Total energy + Delta-G solvation = -3375.690160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43255 -39.79793 -37.16094 -36.24546 -34.26312 -32.53088 -32.10807 -31.03138 -28.19924 -26.33754 -24.07157 -22.79052 -22.63262 -21.44164 -21.01069 -20.80349 -19.74031 -17.43114 -16.87900 -16.76790 -16.63766 -16.09593 -15.75612 -15.26591 -14.93395 -14.41113 -14.12620 -14.09075 -13.76956 -12.87834 -12.71573 -12.33277 -12.17985 -12.01662 -11.95678 -11.86238 -11.73053 -11.65459 -11.38423 -11.05301 -10.79120 -10.69348 -10.64863 -10.57280 -10.55140 -10.39946 -10.13694 -10.01935 -9.69922 -9.36479 -9.07753 -8.31689 -5.97304 -3.99156 2.55034 2.82023 3.13208 3.37062 3.40592 3.44200 3.79731 4.07243 4.18966 4.46815 4.48323 4.51747 4.63501 4.66270 4.84425 4.89978 4.95898 5.06016 5.17106 5.20831 5.31431 5.35105 5.38599 5.39942 5.48237 5.62387 5.64207 5.66226 5.67983 5.75451 5.78834 5.89864 6.15354 6.56768 6.63871 6.66047 6.85939 7.10991 7.69528 7.81802 8.02554 8.07822 8.45491 9.07385 9.64650 11.14143 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029994 B = 0.002454 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.289415 B =11406.637742 C =12064.133610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.511 6.511 14 O -0.355 6.355 15 C 0.072 3.928 16 C 0.077 3.923 17 H 0.081 0.919 18 C -0.149 4.149 19 C -0.145 4.145 20 C 0.102 3.898 21 H 0.070 0.930 22 C -0.154 4.154 23 C -0.175 4.175 24 C -0.166 4.166 25 O -0.352 6.352 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -28.881 1.996 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.399 6.399 14 O -0.272 6.272 15 C -0.002 4.002 16 C 0.019 3.981 17 H 0.098 0.902 18 C -0.187 4.187 19 C -0.183 4.183 20 C 0.044 3.956 21 H 0.088 0.912 22 C -0.172 4.172 23 C -0.212 4.212 24 C -0.203 4.203 25 O -0.271 6.271 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.152 -28.559 2.147 28.721 hybrid contribution 0.691 0.707 -0.137 0.998 sum 2.842 -27.852 2.010 28.069 Atomic orbital electron populations 1.69955 1.06030 1.26713 1.50905 1.25023 0.94872 0.99264 0.95337 0.86634 0.79552 0.83016 0.78665 1.21314 1.20221 1.20237 1.21206 0.93136 0.90939 1.50546 0.92600 1.19124 0.93897 0.91142 0.97442 1.21576 0.98942 0.91271 1.01928 1.21687 0.97331 0.90588 1.05290 1.24428 0.90133 0.83392 0.71578 1.90635 1.18552 1.85175 1.45494 1.86581 1.40364 1.15918 1.84373 1.23021 0.90068 0.83950 1.03186 1.23010 0.93336 0.92961 0.88835 0.90158 1.22923 0.99513 0.95036 1.01200 1.22958 0.96868 0.98524 0.99967 1.22511 0.96752 0.81775 0.94536 0.91176 1.22260 0.93729 1.05436 0.95752 1.23010 1.00675 0.93936 1.03591 1.22887 1.00212 0.95802 1.01354 1.89288 1.76772 1.21746 1.39318 0.92955 0.96335 0.96356 0.92480 0.92447 0.88047 0.88118 0.89947 0.90553 0.89852 0.90067 0.90275 0.90262 0.87321 0.88679 0.88492 0.88597 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 10 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 11 C -0.11 -1.94 5.81 -27.88 -0.16 -2.11 16 12 C 0.46 8.01 7.96 36.00 0.29 8.30 16 13 O -0.51 -10.14 15.73 -18.75 -0.30 -10.43 16 14 O -0.36 -5.47 10.22 -40.90 -0.42 -5.88 16 15 C 0.07 0.89 5.07 37.16 0.19 1.07 16 16 C 0.08 0.77 3.58 -25.95 -0.09 0.67 16 17 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 18 C -0.15 -1.06 6.63 -25.16 -0.17 -1.22 16 19 C -0.15 -0.96 6.63 -25.16 -0.17 -1.13 16 20 C 0.10 0.87 3.46 -25.95 -0.09 0.78 16 21 H 0.07 0.56 7.95 -51.93 -0.41 0.14 16 22 C -0.15 -1.23 5.46 -90.62 -0.49 -1.73 16 23 C -0.18 -1.15 10.19 -26.70 -0.27 -1.42 16 24 C -0.17 -1.38 10.21 -26.70 -0.27 -1.65 16 25 O -0.35 -4.20 10.99 -35.73 -0.39 -4.60 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.06 1.28 8.10 -51.93 -0.42 0.85 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.56 7.87 -51.93 -0.41 0.16 16 37 H 0.08 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.82 7.82 -51.93 -0.41 0.42 16 40 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -33.04 359.38 -9.38 -42.43 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.50 Total: -3.43 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.91 Total: -14.12 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.11 Total: -20.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.04 -9.38 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.714 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds