Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99685 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00079 * 179.97438 * 12 11 10 15 15 C 1.45208 * 116.99618 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46666 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.32875 * 305.69840 * 16 15 14 18 18 C 1.54482 * 110.36655 * 183.45169 * 16 15 14 19 19 C 1.54508 * 104.05624 * 217.18662 * 18 16 15 20 20 C 1.54472 * 104.06627 * 0.02562 * 19 18 16 21 21 H 1.08997 * 110.37677 * 265.03214 * 20 19 18 22 22 C 1.53010 * 110.37242 * 142.80642 * 20 19 18 23 23 C 1.52991 * 117.49958 * 248.74940 * 22 20 19 24 24 C 1.52999 * 117.49783 * 180.08480 * 22 20 19 25 25 O 1.44425 * 110.37214 * 67.95044 * 16 15 14 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.08998 * 109.47213 * 299.99814 * 15 14 12 34 34 H 1.08996 * 109.46813 * 60.00493 * 15 14 12 35 35 H 1.08990 * 110.51206 * 335.83446 * 18 16 15 36 36 H 1.08997 * 110.50979 * 98.41055 * 18 16 15 37 37 H 1.09008 * 110.50977 * 118.64994 * 19 18 16 38 38 H 1.09008 * 110.51352 * 241.35536 * 19 18 16 39 39 H 1.09004 * 115.54433 * 34.41828 * 22 20 19 40 40 H 1.08997 * 117.50219 * 359.97438 * 23 22 20 41 41 H 1.09000 * 117.50183 * 145.02319 * 23 22 20 42 42 H 1.09000 * 117.49634 * 214.97808 * 24 22 20 43 43 H 1.08997 * 117.49988 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6476 -5.9117 0.0022 14 8 2.0122 -7.3981 0.0030 15 6 3.0124 -8.4508 0.0041 16 6 2.3177 -9.8141 0.0047 17 1 1.6140 -9.8801 0.8345 18 6 3.3616 -10.9493 0.0931 19 6 2.7864 -12.0596 -0.8146 20 6 1.4635 -11.4635 -1.3444 21 1 0.6270 -11.7851 -0.7241 22 6 1.2369 -11.8793 -2.7994 23 6 1.3309 -10.7889 -3.8685 24 6 -0.0319 -11.3740 -3.4891 25 8 1.6372 -10.0321 -1.2504 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0452 -0.8885 33 1 3.6352 -8.3612 -0.8859 34 1 3.6349 -8.3594 0.8941 35 1 4.3270 -10.6106 -0.2828 36 1 3.4553 -11.3029 1.1198 37 1 3.4676 -12.2698 -1.6393 38 1 2.5940 -12.9638 -0.2369 39 1 1.5910 -12.8756 -3.0641 40 1 1.5536 -9.7753 -3.5354 41 1 1.7463 -11.0679 -4.8369 42 1 -0.5123 -12.0377 -4.2080 43 1 -0.7050 -10.7450 -2.9065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884573939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = -149.303484 kcal Electronic energy + Delta-G solvation = -21632.282685 eV Core-core repulsion = 18255.848439 eV Total energy + Delta-G solvation = -3376.434246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62745 -40.70599 -37.97039 -37.22878 -36.17705 -34.12245 -33.20452 -31.89049 -29.98255 -27.38022 -25.89131 -23.71540 -23.16806 -22.62407 -22.13253 -21.33460 -21.26340 -18.78621 -18.46786 -17.94560 -17.58464 -17.15766 -16.65154 -16.55769 -16.38788 -15.83594 -15.51317 -14.76929 -14.67783 -14.29460 -14.12125 -13.86871 -13.58917 -13.15803 -12.94505 -12.69550 -12.65362 -12.62647 -12.50783 -12.43609 -12.35433 -12.29432 -11.79481 -11.68077 -11.60970 -11.57844 -11.38636 -11.18160 -11.13046 -11.07048 -10.60528 -10.54350 -8.20209 -6.30617 1.15661 1.40199 1.43236 1.51083 1.61533 2.41892 2.67750 2.91381 3.13015 3.46646 3.51223 3.79304 3.90577 3.95333 4.01218 4.03482 4.12198 4.16827 4.18459 4.25590 4.31612 4.43870 4.54700 4.58465 4.69345 4.81635 4.85440 4.88743 4.93118 5.02379 5.02935 5.08151 5.14051 5.16266 5.25998 5.33977 5.34467 5.52244 5.71898 5.85261 5.91034 6.25492 6.71734 6.84761 7.38071 8.91338 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029468 B = 0.002544 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.948895 B =11003.822378 C =11574.872806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.085 4.085 11 C -0.106 4.106 12 C 0.470 3.530 13 O -0.539 6.539 14 O -0.356 6.356 15 C 0.065 3.935 16 C 0.076 3.924 17 H 0.087 0.913 18 C -0.143 4.143 19 C -0.139 4.139 20 C 0.092 3.908 21 H 0.079 0.921 22 C -0.151 4.151 23 C -0.179 4.179 24 C -0.177 4.177 25 O -0.385 6.385 26 H 0.265 0.735 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -29.844 -1.772 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.123 4.123 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.429 6.429 14 O -0.273 6.273 15 C -0.008 4.008 16 C 0.019 3.981 17 H 0.105 0.895 18 C -0.180 4.180 19 C -0.176 4.176 20 C 0.035 3.965 21 H 0.097 0.903 22 C -0.169 4.169 23 C -0.216 4.216 24 C -0.214 4.214 25 O -0.305 6.305 26 H 0.074 0.926 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.154 0.846 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.332 -29.552 -1.927 29.801 hybrid contribution 0.413 1.096 0.028 1.171 sum 3.745 -28.456 -1.900 28.764 Atomic orbital electron populations 1.70063 1.07578 1.27922 1.51441 1.25924 0.95816 1.03156 0.94658 0.85535 0.78350 0.78277 0.79101 1.19414 1.20480 1.19288 1.21648 0.93448 0.92603 1.50935 0.92724 1.19010 0.94184 0.92173 0.95821 1.21271 0.97890 0.92070 1.01082 1.21508 0.97082 0.88773 1.06947 1.24176 0.89350 0.84098 0.70898 1.90625 1.19603 1.85703 1.47011 1.86558 1.41344 1.15604 1.83745 1.23350 0.89958 0.84133 1.03367 1.23103 0.94656 0.92226 0.88141 0.89492 1.22924 0.98499 0.93918 1.02705 1.22935 0.95914 0.98906 0.99872 1.22676 0.98160 0.80321 0.95364 0.90304 1.22495 1.03066 0.99627 0.91665 1.22841 1.01086 0.98481 0.99217 1.23008 0.90816 1.03877 1.03739 1.89240 1.78887 1.23804 1.38563 0.92627 0.97993 0.97764 0.93446 0.93123 0.86203 0.86723 0.91498 0.88698 0.90203 0.87653 0.89967 0.87945 0.84623 0.90249 0.87957 0.87210 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -32.12 9.11 25.60 0.23 -31.88 16 8 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.72 4.44 30.59 0.14 -3.59 16 11 C -0.11 -3.64 5.81 29.85 0.17 -3.46 16 12 C 0.47 16.06 7.96 71.23 0.57 16.63 16 13 O -0.54 -21.30 15.73 21.97 0.35 -20.95 16 14 O -0.36 -10.62 10.22 -50.28 -0.51 -11.14 16 15 C 0.07 1.55 5.07 71.98 0.36 1.91 16 16 C 0.08 1.40 3.58 31.10 0.11 1.51 16 17 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 18 C -0.14 -1.66 6.63 31.61 0.21 -1.45 16 19 C -0.14 -1.41 6.63 31.61 0.21 -1.20 16 20 C 0.09 1.39 3.64 31.10 0.11 1.50 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 C -0.15 -2.15 5.60 -10.79 -0.06 -2.21 16 23 C -0.18 -3.23 9.89 30.62 0.30 -2.93 16 24 C -0.18 -2.82 10.25 30.62 0.31 -2.51 16 25 O -0.38 -8.61 9.48 -148.90 -1.41 -10.03 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 30 H 0.05 2.25 8.10 -2.39 -0.02 2.23 16 31 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 34 H 0.09 1.99 8.13 -2.39 -0.02 1.97 16 35 H 0.08 0.95 7.87 -2.39 -0.02 0.93 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.81 7.87 -2.38 -0.02 0.79 16 38 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.14 1.30 8.13 -2.38 -0.02 1.29 16 40 H 0.08 1.89 7.07 -2.39 -0.02 1.87 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.71 357.64 4.98 -65.73 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.96 Total: 11.30 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.28 Total: -25.58 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.58 Total: -42.11 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.71 4.98 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.574 kcal (2) G-P(sol) polarization free energy of solvation -70.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds