Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46718 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00513 * 359.97438 * 12 11 10 14 14 O 1.34237 * 119.99541 * 180.02562 * 12 11 10 15 15 C 1.45197 * 116.99419 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46826 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.82358 * 305.57069 * 16 15 14 18 18 C 1.54381 * 109.83256 * 184.58815 * 16 15 14 19 19 C 1.55301 * 102.25340 * 219.13472 * 18 16 15 20 20 C 1.54939 * 100.94328 * 34.13063 * 19 18 16 21 21 H 1.09002 * 110.38992 * 82.51847 * 20 19 18 22 22 C 1.53005 * 110.31148 * 204.64035 * 20 19 18 23 23 C 1.52995 * 117.49872 * 245.79149 * 22 20 19 24 24 C 1.52992 * 60.00141 * 252.50991 * 23 22 20 25 25 O 1.43243 * 109.82711 * 66.45677 * 16 15 14 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 32 32 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 33 33 H 1.08993 * 109.47921 * 299.99741 * 15 14 12 34 34 H 1.09002 * 109.47396 * 60.00260 * 15 14 12 35 35 H 1.08998 * 110.84701 * 337.32538 * 18 16 15 36 36 H 1.08997 * 110.84713 * 100.93973 * 18 16 15 37 37 H 1.09002 * 111.12249 * 276.21371 * 19 18 16 38 38 H 1.09004 * 111.16228 * 152.07463 * 19 18 16 39 39 H 1.08996 * 115.54730 * 31.49647 * 22 20 19 40 40 H 1.09001 * 117.49987 * 359.97438 * 23 22 20 41 41 H 1.08999 * 117.49896 * 145.01550 * 23 22 20 42 42 H 1.08996 * 117.49920 * 252.51241 * 24 23 22 43 43 H 1.09002 * 117.50063 * 107.49047 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6476 -5.9117 0.0013 14 8 2.0122 -7.3981 0.0019 15 6 3.0123 -8.4507 0.0020 16 6 2.3177 -9.8140 0.0027 17 1 1.6188 -9.8723 0.8371 18 6 3.3698 -10.9378 0.1190 19 6 2.8049 -12.0188 -0.8423 20 6 2.1597 -11.1314 -1.9363 21 1 2.9130 -10.8038 -2.6528 22 6 1.0448 -11.8969 -2.6519 23 6 1.2529 -12.2294 -4.1308 24 6 0.2494 -11.1487 -3.7235 25 8 1.6171 -10.0030 -1.2323 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.6351 -8.3604 -0.8880 34 1 3.6351 -8.3602 0.8919 35 1 4.3466 -10.5911 -0.2182 36 1 3.4224 -11.3158 1.1399 37 1 2.0563 -12.6349 -0.3442 38 1 3.6042 -12.6339 -1.2561 39 1 0.5083 -12.6244 -2.0429 40 1 2.1838 -11.9023 -4.5940 41 1 0.8533 -13.1758 -4.4949 42 1 -0.8105 -11.3842 -3.8196 43 1 0.5202 -10.1111 -3.9186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -136.843567 kcal Electronic energy + Delta-G solvation = -21554.180741 eV Core-core repulsion = 18178.286798 eV Total energy + Delta-G solvation = -3375.893943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51707 -39.84546 -37.19844 -36.28555 -34.52940 -32.61794 -32.20629 -31.03050 -27.99571 -26.30847 -23.78565 -22.80996 -22.57777 -21.79206 -21.24818 -20.53174 -19.92687 -17.50690 -17.34526 -16.81137 -16.74918 -16.21641 -15.98175 -15.09241 -14.89309 -14.34277 -13.99712 -13.69609 -13.68046 -13.11133 -12.87719 -12.75664 -12.34588 -12.12637 -11.96213 -11.85846 -11.73462 -11.51503 -11.48584 -11.28922 -10.96507 -10.71455 -10.69815 -10.58009 -10.40097 -10.21316 -10.09166 -9.84969 -9.82895 -9.73404 -8.52133 -8.28754 -6.32806 -4.01343 2.48584 2.76447 3.11038 3.47126 3.51052 3.67041 3.77870 4.00973 4.10382 4.31041 4.55433 4.58377 4.62282 4.68234 4.77489 4.87276 4.95440 5.00601 5.10497 5.21292 5.25935 5.29414 5.31405 5.43067 5.44290 5.55596 5.57623 5.60735 5.62565 5.74206 5.78926 5.89752 6.04353 6.52131 6.55962 6.69490 6.75575 6.94668 7.43280 7.54111 8.01887 8.25697 8.51408 8.92741 9.70508 11.08221 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.002492 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.694423 B =11234.331674 C =11821.492905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.601 4.601 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.092 4.092 11 C -0.113 4.113 12 C 0.460 3.540 13 O -0.511 6.511 14 O -0.353 6.353 15 C 0.056 3.944 16 C 0.083 3.917 17 H 0.092 0.908 18 C -0.150 4.150 19 C -0.145 4.145 20 C 0.105 3.895 21 H 0.071 0.929 22 C -0.157 4.157 23 C -0.176 4.176 24 C -0.165 4.165 25 O -0.358 6.358 26 H 0.269 0.731 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -28.989 -2.908 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.639 4.639 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.130 4.130 11 C -0.150 4.150 12 C 0.304 3.696 13 O -0.399 6.399 14 O -0.270 6.270 15 C -0.019 4.019 16 C 0.025 3.975 17 H 0.110 0.890 18 C -0.187 4.187 19 C -0.183 4.183 20 C 0.048 3.952 21 H 0.089 0.911 22 C -0.176 4.176 23 C -0.213 4.213 24 C -0.202 4.202 25 O -0.277 6.277 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.787 -27.178 -2.986 27.603 hybrid contribution 0.552 -1.894 0.128 1.976 sum 4.339 -29.072 -2.858 29.532 Atomic orbital electron populations 1.70758 1.06867 1.30590 1.46941 1.25866 0.96571 1.02762 0.93808 0.83503 0.74681 0.75029 0.76744 1.21459 1.21472 1.21000 1.22078 0.94458 0.91899 1.55452 0.93165 1.19261 0.94557 0.92995 0.96160 1.21429 0.98632 0.90772 1.02155 1.21687 0.97393 0.90737 1.05217 1.24351 0.90045 0.83521 0.71664 1.90634 1.18529 1.85221 1.45467 1.86587 1.40333 1.15787 1.84264 1.23431 0.90347 0.85279 1.02824 1.22782 0.94043 0.92004 0.88672 0.88969 1.23115 0.99110 0.94856 1.01635 1.23275 1.01009 0.97883 0.96125 1.22536 0.93391 0.85565 0.93740 0.91130 1.22345 1.01256 1.02701 0.91268 1.22992 1.01698 1.00565 0.96005 1.22861 0.97363 0.97860 1.02136 1.88604 1.58187 1.48503 1.32390 0.92097 0.97256 0.97236 0.92292 0.92306 0.88175 0.88112 0.91044 0.90358 0.89958 0.89217 0.89942 0.89575 0.87397 0.88699 0.88503 0.88635 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 26.00 29.90 -169.99 -5.08 20.92 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.60 -17.68 9.11 -34.44 -0.31 -18.00 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.11 -1.98 5.81 -27.88 -0.16 -2.14 16 12 C 0.46 8.06 7.96 36.01 0.29 8.34 16 13 O -0.51 -10.21 15.73 -18.75 -0.29 -10.50 16 14 O -0.35 -5.45 10.21 -41.40 -0.42 -5.87 16 15 C 0.06 0.68 5.00 37.16 0.19 0.87 16 16 C 0.08 0.82 3.82 -26.00 -0.10 0.72 16 17 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 18 C -0.15 -0.99 6.54 -24.79 -0.16 -1.15 16 19 C -0.15 -0.90 6.57 -24.49 -0.16 -1.06 16 20 C 0.10 0.90 3.62 -25.71 -0.09 0.81 16 21 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16 22 C -0.16 -1.24 5.48 -90.62 -0.50 -1.74 16 23 C -0.18 -1.18 10.19 -26.74 -0.27 -1.45 16 24 C -0.17 -1.39 10.20 -26.74 -0.27 -1.66 16 25 O -0.36 -4.21 10.64 -36.71 -0.39 -4.60 16 26 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 27 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 28 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 16 29 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 35 H 0.08 0.51 7.85 -51.93 -0.41 0.11 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.47 7.93 -51.93 -0.41 0.05 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.77 7.96 -51.93 -0.41 0.35 16 40 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -34.09 358.27 -9.39 -43.49 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.46 Total: -2.85 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.90 Total: -18.23 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.76 Total: -27.75 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.11 Total: -20.97 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.09 -9.39 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.358 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds