Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00310 * 2 1 4 4 H 1.48503 * 109.46777 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.46660 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47119 * 150.00063 * 3 2 1 7 7 C 1.37888 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99383 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00044 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47182 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47367 * 179.97438 * 10 9 7 12 12 C 1.34225 * 117.00197 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99800 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00408 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47473 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.43434 * 55.09154 * 15 14 12 17 17 C 1.53086 * 109.43332 * 175.00200 * 15 14 12 18 18 C 1.53352 * 109.07188 * 179.43696 * 17 15 14 19 19 C 1.52859 * 108.86284 * 305.05852 * 18 17 15 20 20 C 1.53348 * 113.53784 * 282.36069 * 19 18 17 21 21 C 1.53847 * 86.95504 * 220.09043 * 20 19 18 22 22 C 1.53327 * 113.59341 * 184.38048 * 19 18 17 23 23 C 1.53074 * 112.49866 * 53.17360 * 19 18 17 24 24 O 1.42869 * 109.39732 * 295.20503 * 15 14 12 25 25 H 0.97006 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99520 * 9 7 2 27 27 H 1.09000 * 109.47177 * 299.99642 * 9 7 2 28 28 H 1.09000 * 109.46767 * 59.99667 * 10 9 7 29 29 H 1.09000 * 109.46825 * 299.99922 * 10 9 7 30 30 H 1.09008 * 109.46558 * 59.99766 * 14 12 11 31 31 H 1.08999 * 109.47338 * 300.00729 * 14 12 11 32 32 H 1.08995 * 109.53534 * 59.55925 * 17 15 14 33 33 H 1.09002 * 109.53421 * 299.31096 * 17 15 14 34 34 H 1.09002 * 109.59453 * 64.91350 * 18 17 15 35 35 H 1.08999 * 109.59201 * 185.20855 * 18 17 15 36 36 H 1.09010 * 113.63461 * 334.60522 * 20 19 18 37 37 H 1.08997 * 113.63590 * 105.56887 * 20 19 18 38 38 H 1.09004 * 113.59872 * 270.54583 * 21 20 19 39 39 H 1.08999 * 113.61018 * 139.67926 * 21 20 19 40 40 H 1.09005 * 113.63067 * 254.37117 * 22 19 18 41 41 H 1.08994 * 113.63699 * 25.33678 * 22 19 18 42 42 H 1.09003 * 109.48180 * 186.52491 * 23 19 18 43 43 H 1.08998 * 109.49596 * 66.37448 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 8 5.4734 -2.6367 0.0022 12 6 6.0828 -3.8327 0.0037 13 8 5.4246 -4.8460 0.0046 14 6 7.5877 -3.9117 0.0044 15 6 8.0214 -5.3789 0.0054 16 1 7.5605 -5.8939 -0.8374 17 6 9.5450 -5.4596 -0.1197 18 6 9.9717 -6.9325 -0.1036 19 6 9.4133 -7.5951 1.1556 20 6 10.2051 -7.2614 2.4258 21 6 10.0110 -8.7319 2.8344 22 6 9.8651 -9.0491 1.3359 23 6 7.9031 -7.3930 1.3033 24 8 7.6052 -5.9958 1.2249 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6806 -0.8889 28 1 3.6583 -3.1511 -0.8875 29 1 3.6577 -3.1499 0.8925 30 1 7.9771 -3.4166 0.8940 31 1 7.9778 -3.4185 -0.8859 32 1 10.0077 -4.9369 0.7174 33 1 9.8587 -4.9995 -1.0567 34 1 9.5791 -7.4365 -0.9867 35 1 11.0598 -6.9978 -0.0991 36 1 11.2446 -6.9943 2.2352 37 1 9.6989 -6.5546 3.0833 38 1 9.1015 -8.9089 3.4085 39 1 10.8944 -9.1783 3.2910 40 1 9.0856 -9.7791 1.1176 41 1 10.8103 -9.2772 0.8435 42 1 7.5770 -7.7815 2.2681 43 1 7.3854 -7.9214 0.5028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885531463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = -134.407586 kcal Electronic energy + Delta-G solvation = -22257.738505 eV Core-core repulsion = 18881.950194 eV Total energy + Delta-G solvation = -3375.788311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84753 -39.84789 -37.56549 -35.99804 -33.57539 -33.26421 -31.54344 -30.61349 -27.78680 -26.01306 -25.48461 -24.77696 -23.13675 -21.18671 -20.70434 -20.30156 -18.79621 -17.40207 -16.76575 -16.56236 -16.14382 -15.91739 -15.75466 -15.59773 -14.54921 -14.26629 -14.17196 -14.12362 -13.58126 -13.21195 -12.88684 -12.78029 -12.67415 -12.33050 -12.21148 -12.10229 -11.63768 -11.41006 -11.35901 -11.22545 -11.11630 -10.72048 -10.65443 -10.48898 -10.34292 -10.21492 -9.92706 -9.81595 -9.64409 -9.50295 -9.31882 -8.60421 -6.10949 -4.11820 2.64322 3.15399 3.29287 3.36537 3.41481 3.56283 4.20681 4.23374 4.31294 4.40453 4.53066 4.59443 4.64101 4.78392 4.91601 5.10804 5.18994 5.22655 5.24293 5.31309 5.34959 5.37365 5.44373 5.49601 5.53374 5.57171 5.63966 5.65144 5.74567 5.83179 5.95756 6.02736 6.04438 6.07531 6.12242 6.50338 6.87298 7.12766 7.24366 7.27524 7.65259 8.25533 8.42286 8.91078 9.48761 11.01693 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042920 B = 0.002761 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.223910 B =10138.133014 C =10367.979316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.365 6.365 12 C 0.456 3.544 13 O -0.505 6.505 14 C -0.109 4.109 15 C 0.103 3.897 16 H 0.067 0.933 17 C -0.148 4.148 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.129 4.129 23 C 0.089 3.911 24 O -0.362 6.362 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.049 -15.159 1.413 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.282 6.282 12 C 0.298 3.702 13 O -0.393 6.393 14 C -0.147 4.147 15 C 0.045 3.955 16 H 0.085 0.915 17 C -0.186 4.186 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.163 4.163 21 C -0.181 4.181 22 C -0.167 4.167 23 C 0.012 3.988 24 O -0.281 6.281 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.540 -15.215 1.564 28.916 hybrid contribution 0.327 0.646 -0.232 0.760 sum 24.867 -14.570 1.332 28.851 Atomic orbital electron populations 1.69897 1.06289 1.27173 1.50225 1.24946 0.94771 0.99193 0.94162 0.86741 0.80450 0.83256 0.78706 1.20082 1.21191 1.18733 1.20860 0.88351 0.95021 1.52233 0.90675 1.19620 0.96962 0.90299 0.97810 1.23334 0.72502 1.01396 1.01681 1.86470 1.26180 1.32435 1.83134 1.23333 0.91586 0.82140 0.73152 1.90648 1.67187 1.36551 1.44894 1.21422 0.89809 0.97156 1.06315 1.21808 0.93129 0.91993 0.88612 0.91526 1.22208 0.95896 0.97383 1.03066 1.21515 1.00496 0.95038 0.97073 1.22336 0.96910 0.96725 0.96019 1.22853 0.99926 0.96827 0.96742 1.22875 1.01984 0.96932 0.96313 1.22856 1.01496 0.95586 0.96752 1.22315 0.91430 0.82752 1.02285 1.88027 1.80871 1.21814 1.37364 0.92461 0.95412 0.95869 0.91876 0.91760 0.87132 0.86607 0.90661 0.90603 0.91686 0.91340 0.90284 0.90931 0.90107 0.91570 0.91359 0.89980 0.88823 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.85 16 7 C -0.53 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.23 4.42 -27.89 -0.12 -0.36 16 10 C 0.08 1.85 5.40 37.16 0.20 2.05 16 11 O -0.37 -7.12 10.22 -39.25 -0.40 -7.52 16 12 C 0.46 7.85 7.83 36.00 0.28 8.14 16 13 O -0.50 -10.14 15.16 -24.12 -0.37 -10.51 16 14 C -0.11 -1.28 5.52 -27.89 -0.15 -1.43 16 15 C 0.10 1.15 2.13 -26.69 -0.06 1.09 16 16 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 17 C -0.15 -1.19 5.36 -26.50 -0.14 -1.33 16 18 C -0.10 -0.77 5.19 -26.62 -0.14 -0.91 16 19 C -0.12 -0.96 0.86 -154.19 -0.13 -1.10 16 20 C -0.13 -0.96 7.12 -26.11 -0.19 -1.15 16 21 C -0.14 -0.97 7.74 -25.84 -0.20 -1.17 16 22 C -0.13 -0.87 7.24 -26.11 -0.19 -1.06 16 23 C 0.09 0.93 5.95 37.20 0.22 1.15 16 24 O -0.36 -4.81 9.63 -49.94 -0.48 -5.29 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 28 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 30 H 0.11 1.17 8.14 -51.92 -0.42 0.74 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 36 H 0.08 0.54 8.02 -51.92 -0.42 0.13 16 37 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.08 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 42 H 0.09 0.92 7.37 -51.93 -0.38 0.54 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -32.86 344.75 -8.44 -41.30 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.44 Total: -3.59 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.65 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -1.25 Total: -23.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.86 -8.44 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885531463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.110 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds