Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00310 * 2 1 4 4 H 1.48503 * 109.46777 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.46660 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47119 * 150.00063 * 3 2 1 7 7 C 1.37888 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99383 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00044 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47182 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47367 * 179.97438 * 10 9 7 12 12 C 1.34225 * 117.00197 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99800 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00408 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47473 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.43434 * 55.09154 * 15 14 12 17 17 C 1.53086 * 109.43332 * 175.00200 * 15 14 12 18 18 C 1.53352 * 109.07188 * 179.43696 * 17 15 14 19 19 C 1.52859 * 108.86284 * 305.05852 * 18 17 15 20 20 C 1.53348 * 113.53784 * 282.36069 * 19 18 17 21 21 C 1.53847 * 86.95504 * 220.09043 * 20 19 18 22 22 C 1.53327 * 113.59341 * 184.38048 * 19 18 17 23 23 C 1.53074 * 112.49866 * 53.17360 * 19 18 17 24 24 O 1.42869 * 109.39732 * 295.20503 * 15 14 12 25 25 H 0.97006 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99520 * 9 7 2 27 27 H 1.09000 * 109.47177 * 299.99642 * 9 7 2 28 28 H 1.09000 * 109.46767 * 59.99667 * 10 9 7 29 29 H 1.09000 * 109.46825 * 299.99922 * 10 9 7 30 30 H 1.09008 * 109.46558 * 59.99766 * 14 12 11 31 31 H 1.08999 * 109.47338 * 300.00729 * 14 12 11 32 32 H 1.08995 * 109.53534 * 59.55925 * 17 15 14 33 33 H 1.09002 * 109.53421 * 299.31096 * 17 15 14 34 34 H 1.09002 * 109.59453 * 64.91350 * 18 17 15 35 35 H 1.08999 * 109.59201 * 185.20855 * 18 17 15 36 36 H 1.09010 * 113.63461 * 334.60522 * 20 19 18 37 37 H 1.08997 * 113.63590 * 105.56887 * 20 19 18 38 38 H 1.09004 * 113.59872 * 270.54583 * 21 20 19 39 39 H 1.08999 * 113.61018 * 139.67926 * 21 20 19 40 40 H 1.09005 * 113.63067 * 254.37117 * 22 19 18 41 41 H 1.08994 * 113.63699 * 25.33678 * 22 19 18 42 42 H 1.09003 * 109.48180 * 186.52491 * 23 19 18 43 43 H 1.08998 * 109.49596 * 66.37448 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 8 5.4734 -2.6367 0.0022 12 6 6.0828 -3.8327 0.0037 13 8 5.4246 -4.8460 0.0046 14 6 7.5877 -3.9117 0.0044 15 6 8.0214 -5.3789 0.0054 16 1 7.5605 -5.8939 -0.8374 17 6 9.5450 -5.4596 -0.1197 18 6 9.9717 -6.9325 -0.1036 19 6 9.4133 -7.5951 1.1556 20 6 10.2051 -7.2614 2.4258 21 6 10.0110 -8.7319 2.8344 22 6 9.8651 -9.0491 1.3359 23 6 7.9031 -7.3930 1.3033 24 8 7.6052 -5.9958 1.2249 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6806 -0.8889 28 1 3.6583 -3.1511 -0.8875 29 1 3.6577 -3.1499 0.8925 30 1 7.9771 -3.4166 0.8940 31 1 7.9778 -3.4185 -0.8859 32 1 10.0077 -4.9369 0.7174 33 1 9.8587 -4.9995 -1.0567 34 1 9.5791 -7.4365 -0.9867 35 1 11.0598 -6.9978 -0.0991 36 1 11.2446 -6.9943 2.2352 37 1 9.6989 -6.5546 3.0833 38 1 9.1015 -8.9089 3.4085 39 1 10.8944 -9.1783 3.2910 40 1 9.0856 -9.7791 1.1176 41 1 10.8103 -9.2772 0.8435 42 1 7.5770 -7.7815 2.2681 43 1 7.3854 -7.9214 0.5028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885531463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -153.123560 kcal Electronic energy + Delta-G solvation = -22258.550091 eV Core-core repulsion = 18881.950194 eV Total energy + Delta-G solvation = -3376.599897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71856 -41.11453 -38.45633 -37.48419 -35.39938 -34.36925 -32.91268 -32.09850 -28.70978 -27.16495 -26.55089 -25.77907 -24.05095 -22.65709 -21.88826 -21.58156 -19.49437 -19.20257 -18.28529 -17.84310 -17.30771 -17.10219 -16.80189 -16.31655 -16.27264 -15.45696 -15.27599 -14.97886 -14.74701 -14.72405 -14.21199 -13.71699 -13.53254 -13.41003 -13.24858 -13.09859 -12.97340 -12.81926 -12.45849 -12.40640 -12.27642 -12.00610 -11.81391 -11.77846 -11.56308 -11.44649 -11.39606 -11.36545 -10.93646 -10.81990 -10.80240 -10.30818 -8.35264 -6.43815 1.26884 1.37846 1.40123 1.53091 1.76451 2.34282 2.75048 2.99435 3.57552 3.61579 3.66509 3.71414 3.80772 3.98394 4.08845 4.14815 4.15470 4.19246 4.23544 4.47588 4.49153 4.54236 4.61451 4.67317 4.67817 4.78524 4.86006 4.88908 4.93839 5.05804 5.07920 5.10070 5.13095 5.21041 5.28002 5.33786 5.48164 5.49959 5.56572 5.61865 6.14653 6.29357 6.62068 6.79941 7.21294 8.81004 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042920 B = 0.002761 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.223910 B =10138.133014 C =10367.979316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.002 4.002 10 C 0.094 3.906 11 O -0.364 6.364 12 C 0.450 3.550 13 O -0.540 6.540 14 C -0.100 4.100 15 C 0.098 3.902 16 H 0.051 0.949 17 C -0.139 4.139 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.124 4.124 23 C 0.084 3.916 24 O -0.393 6.393 25 H 0.271 0.729 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.746 -14.138 1.034 32.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.021 3.979 11 O -0.281 6.281 12 C 0.294 3.706 13 O -0.429 6.429 14 C -0.137 4.137 15 C 0.040 3.960 16 H 0.069 0.931 17 C -0.177 4.177 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.161 4.161 21 C -0.181 4.181 22 C -0.161 4.161 23 C 0.007 3.993 24 O -0.312 6.312 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 28.261 -14.218 1.182 31.658 hybrid contribution -0.895 0.195 -0.098 0.921 sum 27.366 -14.023 1.084 30.769 Atomic orbital electron populations 1.70046 1.08389 1.28680 1.51333 1.25997 0.95713 1.03716 0.93335 0.85561 0.79497 0.77414 0.79632 1.18589 1.20562 1.16699 1.21129 0.90821 0.93751 1.52553 0.94934 1.19455 0.94089 0.91929 0.98505 1.22875 0.74633 0.99719 1.00703 1.86466 1.24097 1.33974 1.83566 1.24565 0.93700 0.80781 0.71505 1.90641 1.68389 1.37445 1.46448 1.21677 0.84954 0.98221 1.08849 1.21958 0.95395 0.91236 0.87402 0.93082 1.22163 0.92945 0.98093 1.04454 1.21554 1.01554 0.94543 0.96464 1.22267 0.95021 0.97950 0.96831 1.22855 1.00311 0.96852 0.96098 1.22876 1.02202 0.96526 0.96471 1.22862 1.02012 0.94580 0.96685 1.22392 0.93497 0.81602 1.01772 1.87974 1.81774 1.23081 1.38416 0.92014 0.94694 0.94518 0.92686 0.93125 0.85333 0.82870 0.90117 0.88341 0.91802 0.89407 0.88893 0.92564 0.90781 0.90448 0.91610 0.88517 0.89156 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.96 43.81 27.47 68.60 1.88 45.69 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 7 C -0.54 -32.27 9.66 25.60 0.25 -32.02 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.02 16 10 C 0.09 4.22 5.40 71.98 0.39 4.61 16 11 O -0.36 -13.82 10.22 -51.37 -0.53 -14.35 16 12 C 0.45 15.19 7.83 71.24 0.56 15.75 16 13 O -0.54 -22.11 15.16 27.09 0.41 -21.70 16 14 C -0.10 -2.10 5.52 29.85 0.16 -1.93 16 15 C 0.10 2.05 2.13 30.62 0.07 2.11 16 16 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 17 C -0.14 -1.81 5.36 30.74 0.16 -1.65 16 18 C -0.10 -1.27 5.19 30.67 0.16 -1.12 16 19 C -0.12 -1.76 0.86 -51.98 -0.04 -1.81 16 20 C -0.12 -1.68 7.12 31.00 0.22 -1.46 16 21 C -0.14 -1.73 7.74 31.17 0.24 -1.49 16 22 C -0.12 -1.45 7.24 31.00 0.22 -1.23 16 23 C 0.08 1.77 5.95 72.01 0.43 2.20 16 24 O -0.39 -10.39 9.63 -134.91 -1.30 -11.69 16 25 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 26 H 0.03 1.65 7.20 -2.39 -0.02 1.64 16 27 H 0.04 1.69 7.57 -2.39 -0.02 1.68 16 28 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 29 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 30 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.78 8.04 -2.39 -0.02 0.76 16 36 H 0.09 1.01 8.02 -2.38 -0.02 0.99 16 37 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 38 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.80 8.10 -2.38 -0.02 0.79 16 41 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 42 H 0.09 1.86 7.37 -2.39 -0.02 1.84 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.19 344.75 5.09 -68.09 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.91 Total: 10.11 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.41 Total: -16.95 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.30 Total: -59.21 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.41 Total: -47.74 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -73.19 5.09 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885531463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.031 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds