Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47577 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00364 * 180.02562 * 11 10 9 13 13 O 1.20829 * 119.99746 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00039 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46875 * 179.97438 * 14 12 11 16 16 H 1.08992 * 109.43102 * 304.90058 * 15 14 12 17 17 C 1.53081 * 109.43087 * 185.00012 * 15 14 12 18 18 C 1.53346 * 109.06983 * 180.51858 * 17 15 14 19 19 C 1.52845 * 108.76167 * 54.84094 * 18 17 15 20 20 C 1.53332 * 113.59505 * 175.72956 * 19 18 17 21 21 C 1.53859 * 86.96714 * 220.13880 * 20 19 18 22 22 C 1.53357 * 113.54456 * 77.75747 * 19 18 17 23 23 C 1.52750 * 112.68240 * 306.80138 * 19 18 17 24 24 O 1.42871 * 109.43590 * 64.76282 * 15 14 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 29 29 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 30 30 H 1.08998 * 109.46658 * 299.99682 * 14 12 11 31 31 H 1.08994 * 109.47102 * 59.99541 * 14 12 11 32 32 H 1.09001 * 109.53366 * 300.39771 * 17 15 14 33 33 H 1.09001 * 109.53777 * 60.63716 * 17 15 14 34 34 H 1.09006 * 109.58493 * 174.62218 * 18 17 15 35 35 H 1.08993 * 109.59084 * 295.05515 * 18 17 15 36 36 H 1.09001 * 113.63515 * 334.65575 * 20 19 18 37 37 H 1.08998 * 113.63380 * 105.61728 * 20 19 18 38 38 H 1.09005 * 113.59936 * 270.55654 * 21 20 19 39 39 H 1.09003 * 113.60746 * 139.68283 * 21 20 19 40 40 H 1.09000 * 113.63551 * 254.42974 * 22 19 18 41 41 H 1.09009 * 113.63208 * 25.30633 * 22 19 18 42 42 H 1.09002 * 109.52240 * 173.51500 * 23 19 18 43 43 H 1.08999 * 109.52169 * 293.64472 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 8 5.4735 -2.6367 -0.0002 12 6 6.0829 -3.8326 -0.0017 13 8 5.4248 -4.8460 -0.0035 14 6 7.5879 -3.9115 -0.0012 15 6 8.0216 -5.3788 -0.0026 16 1 7.5601 -5.8941 0.8396 17 6 9.5450 -5.4596 0.1237 18 6 9.9716 -6.9324 0.1084 19 6 9.4109 -7.5936 -1.1504 20 6 9.8589 -9.0488 -1.3309 21 6 10.0047 -8.7323 -2.8295 22 6 10.2029 -7.2622 -2.4211 23 6 7.9039 -7.3934 -1.2995 24 8 7.6060 -5.9962 -1.2222 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 3.6579 -3.1514 0.8880 29 1 3.6585 -3.1495 -0.8920 30 1 7.9779 -3.4161 -0.8904 31 1 7.9772 -3.4187 0.8895 32 1 10.0084 -4.9371 -0.7132 33 1 9.8581 -4.9990 1.0607 34 1 11.0597 -6.9976 0.1017 35 1 9.5787 -7.4359 0.9916 36 1 10.8039 -9.2793 -0.8391 37 1 9.0778 -9.7769 -1.1121 38 1 9.0944 -8.9069 -3.4030 39 1 10.8867 -9.1810 -3.2866 40 1 9.6982 -6.5542 -3.0785 41 1 11.2429 -6.9964 -2.2310 42 1 7.5784 -7.7825 -2.2643 43 1 7.3854 -7.9222 -0.4997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885531464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = -134.376837 kcal Electronic energy + Delta-G solvation = -22260.495988 eV Core-core repulsion = 18884.709010 eV Total energy + Delta-G solvation = -3375.786978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86386 -39.85035 -37.56328 -35.99761 -33.57796 -33.26374 -31.54383 -30.61271 -27.79501 -26.01328 -25.48827 -24.77762 -23.13679 -21.18577 -20.70458 -20.30175 -18.79706 -17.40219 -16.76666 -16.56236 -16.14803 -15.91734 -15.75379 -15.59704 -14.55099 -14.26563 -14.17310 -14.12332 -13.58085 -13.21020 -12.88986 -12.78212 -12.67434 -12.32999 -12.21242 -12.10309 -11.63640 -11.41037 -11.35918 -11.22506 -11.11677 -10.72172 -10.65424 -10.48887 -10.33995 -10.21439 -9.92702 -9.81593 -9.64384 -9.50467 -9.31892 -8.60354 -6.10962 -4.11827 2.64342 3.15400 3.29280 3.36544 3.41480 3.56167 4.20842 4.23450 4.31327 4.40455 4.53035 4.59610 4.64150 4.78547 4.91608 5.10996 5.19028 5.22627 5.24217 5.31268 5.34935 5.37322 5.44417 5.49657 5.53402 5.57176 5.63916 5.65201 5.74618 5.83227 5.95720 6.02707 6.04445 6.07505 6.12330 6.50316 6.87296 7.12779 7.24362 7.27489 7.65252 8.25551 8.42306 8.91073 9.48755 11.01691 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042904 B = 0.002762 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.466707 B =10133.743868 C =10364.229454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.083 3.917 11 O -0.365 6.365 12 C 0.456 3.544 13 O -0.505 6.505 14 C -0.109 4.109 15 C 0.103 3.897 16 H 0.067 0.933 17 C -0.148 4.148 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.126 4.126 23 C 0.089 3.911 24 O -0.362 6.362 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.051 -15.160 -1.398 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.187 1.187 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.282 6.282 12 C 0.298 3.702 13 O -0.393 6.393 14 C -0.147 4.147 15 C 0.045 3.955 16 H 0.085 0.915 17 C -0.186 4.186 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.167 4.167 21 C -0.181 4.181 22 C -0.163 4.163 23 C 0.012 3.988 24 O -0.281 6.281 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.542 -15.216 -1.550 28.918 hybrid contribution 0.325 0.645 0.232 0.759 sum 24.867 -14.572 -1.317 28.852 Atomic orbital electron populations 1.69902 1.06285 1.27170 1.50233 1.24948 0.94774 0.99197 0.94165 0.86739 0.80445 0.83248 0.78702 1.20088 1.18734 1.21194 1.20860 0.88351 0.95023 1.52222 0.90674 1.19622 0.96962 0.90299 0.97810 1.23335 0.72503 1.01395 1.01681 1.86469 1.26180 1.32438 1.83134 1.23334 0.91586 0.82140 0.73153 1.90648 1.67185 1.36552 1.44893 1.21421 0.89806 0.97154 1.06311 1.21806 0.93133 0.91993 0.88612 0.91537 1.22209 0.95901 0.97390 1.03065 1.21512 1.00486 0.95039 0.97056 1.22278 0.96926 0.96742 0.96053 1.22863 1.01516 0.95588 0.96753 1.22876 1.01982 0.96928 0.96315 1.22856 0.99927 0.96832 0.96726 1.22259 0.91461 0.82762 1.02304 1.88028 1.80933 1.21786 1.37341 0.92463 0.95408 0.95869 0.91880 0.91758 0.87135 0.86606 0.90662 0.90605 0.91313 0.91668 0.89985 0.91361 0.90102 0.91565 0.90939 0.90281 0.88820 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.85 5.40 37.16 0.20 2.05 16 11 O -0.37 -7.12 10.22 -39.24 -0.40 -7.52 16 12 C 0.46 7.85 7.84 36.01 0.28 8.14 16 13 O -0.50 -10.14 15.16 -24.12 -0.37 -10.51 16 14 C -0.11 -1.28 5.52 -27.88 -0.15 -1.43 16 15 C 0.10 1.15 2.13 -26.69 -0.06 1.09 16 16 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 17 C -0.15 -1.19 5.36 -26.51 -0.14 -1.33 16 18 C -0.10 -0.77 5.21 -26.63 -0.14 -0.91 16 19 C -0.12 -0.96 0.86 -154.36 -0.13 -1.10 16 20 C -0.13 -0.87 7.23 -26.11 -0.19 -1.06 16 21 C -0.14 -0.97 7.74 -25.84 -0.20 -1.17 16 22 C -0.13 -0.96 7.12 -26.10 -0.19 -1.15 16 23 C 0.09 0.93 5.93 37.03 0.22 1.15 16 24 O -0.36 -4.81 9.63 -49.95 -0.48 -5.29 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 28 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 30 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 37 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 38 H 0.08 0.55 7.64 -51.93 -0.40 0.16 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.08 0.54 8.02 -51.92 -0.42 0.13 16 42 H 0.09 0.92 7.34 -51.93 -0.38 0.54 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -32.86 344.65 -8.44 -41.30 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.44 Total: -3.59 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.65 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.25 Total: -23.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.86 -8.44 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885531464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.075 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds