Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47577 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00364 * 180.02562 * 11 10 9 13 13 O 1.20829 * 119.99746 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00039 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46875 * 179.97438 * 14 12 11 16 16 H 1.08992 * 109.43102 * 304.90058 * 15 14 12 17 17 C 1.53081 * 109.43087 * 185.00012 * 15 14 12 18 18 C 1.53346 * 109.06983 * 180.51858 * 17 15 14 19 19 C 1.52845 * 108.76167 * 54.84094 * 18 17 15 20 20 C 1.53332 * 113.59505 * 175.72956 * 19 18 17 21 21 C 1.53859 * 86.96714 * 220.13880 * 20 19 18 22 22 C 1.53357 * 113.54456 * 77.75747 * 19 18 17 23 23 C 1.52750 * 112.68240 * 306.80138 * 19 18 17 24 24 O 1.42871 * 109.43590 * 64.76282 * 15 14 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 29 29 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 30 30 H 1.08998 * 109.46658 * 299.99682 * 14 12 11 31 31 H 1.08994 * 109.47102 * 59.99541 * 14 12 11 32 32 H 1.09001 * 109.53366 * 300.39771 * 17 15 14 33 33 H 1.09001 * 109.53777 * 60.63716 * 17 15 14 34 34 H 1.09006 * 109.58493 * 174.62218 * 18 17 15 35 35 H 1.08993 * 109.59084 * 295.05515 * 18 17 15 36 36 H 1.09001 * 113.63515 * 334.65575 * 20 19 18 37 37 H 1.08998 * 113.63380 * 105.61728 * 20 19 18 38 38 H 1.09005 * 113.59936 * 270.55654 * 21 20 19 39 39 H 1.09003 * 113.60746 * 139.68283 * 21 20 19 40 40 H 1.09000 * 113.63551 * 254.42974 * 22 19 18 41 41 H 1.09009 * 113.63208 * 25.30633 * 22 19 18 42 42 H 1.09002 * 109.52240 * 173.51500 * 23 19 18 43 43 H 1.08999 * 109.52169 * 293.64472 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 8 5.4735 -2.6367 -0.0002 12 6 6.0829 -3.8326 -0.0017 13 8 5.4248 -4.8460 -0.0035 14 6 7.5879 -3.9115 -0.0012 15 6 8.0216 -5.3788 -0.0026 16 1 7.5601 -5.8941 0.8396 17 6 9.5450 -5.4596 0.1237 18 6 9.9716 -6.9324 0.1084 19 6 9.4109 -7.5936 -1.1504 20 6 9.8589 -9.0488 -1.3309 21 6 10.0047 -8.7323 -2.8295 22 6 10.2029 -7.2622 -2.4211 23 6 7.9039 -7.3934 -1.2995 24 8 7.6060 -5.9962 -1.2222 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 3.6579 -3.1514 0.8880 29 1 3.6585 -3.1495 -0.8920 30 1 7.9779 -3.4161 -0.8904 31 1 7.9772 -3.4187 0.8895 32 1 10.0084 -4.9371 -0.7132 33 1 9.8581 -4.9990 1.0607 34 1 11.0597 -6.9976 0.1017 35 1 9.5787 -7.4359 0.9916 36 1 10.8039 -9.2793 -0.8391 37 1 9.0778 -9.7769 -1.1121 38 1 9.0944 -8.9069 -3.4030 39 1 10.8867 -9.1810 -3.2866 40 1 9.6982 -6.5542 -3.0785 41 1 11.2429 -6.9964 -2.2310 42 1 7.5784 -7.7825 -2.2643 43 1 7.3854 -7.9222 -0.4997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885531464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = -153.101448 kcal Electronic energy + Delta-G solvation = -22261.307948 eV Core-core repulsion = 18884.709010 eV Total energy + Delta-G solvation = -3376.598938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72729 -41.12459 -38.45510 -37.48343 -35.39873 -34.37180 -32.91217 -32.09877 -28.71681 -27.16845 -26.55029 -25.78225 -24.05085 -22.65719 -21.88747 -21.58194 -19.49550 -19.20295 -18.28551 -17.84341 -17.30776 -17.10502 -16.80384 -16.31605 -16.27226 -15.45553 -15.27574 -14.98221 -14.74773 -14.72321 -14.21077 -13.71665 -13.53616 -13.41106 -13.24909 -13.09817 -12.97430 -12.81919 -12.45834 -12.40665 -12.27466 -12.00685 -11.81382 -11.77886 -11.56338 -11.44616 -11.39613 -11.36547 -10.93437 -10.81933 -10.80206 -10.31071 -8.35288 -6.43834 1.26885 1.37858 1.40113 1.53088 1.76447 2.34285 2.74927 2.99403 3.57786 3.61562 3.66455 3.71563 3.80985 3.98372 4.08902 4.14898 4.15472 4.19249 4.23559 4.47492 4.49250 4.54242 4.61427 4.67344 4.67782 4.78620 4.86024 4.88883 4.93944 5.05771 5.07896 5.10067 5.13138 5.21090 5.27980 5.33723 5.48125 5.49947 5.56624 5.61867 6.14657 6.29348 6.62060 6.79944 7.21279 8.80993 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042904 B = 0.002762 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.466707 B =10133.743868 C =10364.229454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.244 1.244 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.002 4.002 10 C 0.094 3.906 11 O -0.364 6.364 12 C 0.450 3.550 13 O -0.540 6.540 14 C -0.100 4.100 15 C 0.098 3.902 16 H 0.051 0.949 17 C -0.139 4.139 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.124 4.124 23 C 0.084 3.916 24 O -0.393 6.393 25 H 0.271 0.729 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.749 -14.138 -1.015 32.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.167 1.167 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.021 3.979 11 O -0.281 6.281 12 C 0.294 3.706 13 O -0.429 6.429 14 C -0.137 4.137 15 C 0.040 3.960 16 H 0.069 0.931 17 C -0.177 4.177 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.162 4.162 21 C -0.181 4.181 22 C -0.161 4.161 23 C 0.007 3.993 24 O -0.313 6.313 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 28.264 -14.219 -1.165 31.660 hybrid contribution -0.898 0.194 0.098 0.924 sum 27.366 -14.025 -1.067 30.769 Atomic orbital electron populations 1.70050 1.08385 1.28676 1.51344 1.25999 0.95716 1.03719 0.93337 0.85560 0.79494 0.77408 0.79631 1.18589 1.16698 1.20565 1.21129 0.90821 0.93752 1.52540 0.94933 1.19457 0.94089 0.91929 0.98507 1.22876 0.74634 0.99719 1.00702 1.86465 1.24097 1.33976 1.83565 1.24567 0.93701 0.80781 0.71506 1.90641 1.68388 1.37446 1.46447 1.21676 0.84950 0.98219 1.08848 1.21956 0.95402 0.91237 0.87400 0.93095 1.22164 0.92947 0.98104 1.04454 1.21551 1.01545 0.94540 0.96445 1.22209 0.95046 0.97966 0.96868 1.22868 1.02033 0.94582 0.96686 1.22877 1.02196 0.96528 0.96473 1.22858 1.00316 0.96850 0.96080 1.22337 0.93518 0.81611 1.01791 1.87975 1.81834 1.23055 1.38396 0.92017 0.94688 0.94517 0.92691 0.93122 0.85335 0.82868 0.90118 0.88343 0.89375 0.91782 0.88522 0.91617 0.90780 0.90443 0.92576 0.88885 0.89157 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -32.26 9.66 25.60 0.25 -32.02 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C 0.09 4.22 5.40 71.98 0.39 4.61 16 11 O -0.36 -13.82 10.22 -51.36 -0.52 -14.35 16 12 C 0.45 15.19 7.84 71.24 0.56 15.75 16 13 O -0.54 -22.11 15.16 27.09 0.41 -21.70 16 14 C -0.10 -2.10 5.52 29.85 0.16 -1.93 16 15 C 0.10 2.05 2.13 30.62 0.07 2.11 16 16 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 17 C -0.14 -1.81 5.36 30.74 0.16 -1.65 16 18 C -0.10 -1.27 5.21 30.66 0.16 -1.11 16 19 C -0.12 -1.77 0.86 -52.09 -0.04 -1.81 16 20 C -0.12 -1.46 7.23 31.00 0.22 -1.23 16 21 C -0.14 -1.74 7.74 31.17 0.24 -1.49 16 22 C -0.12 -1.68 7.12 31.00 0.22 -1.45 16 23 C 0.08 1.77 5.93 71.90 0.43 2.20 16 24 O -0.39 -10.40 9.63 -134.91 -1.30 -11.70 16 25 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.03 1.66 7.20 -2.38 -0.02 1.64 16 27 H 0.04 1.69 7.57 -2.39 -0.02 1.68 16 28 H 0.05 2.51 8.13 -2.38 -0.02 2.50 16 29 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 30 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.78 8.03 -2.38 -0.02 0.76 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 37 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 38 H 0.07 0.98 7.64 -2.38 -0.02 0.96 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.09 1.01 8.02 -2.38 -0.02 0.99 16 42 H 0.09 1.86 7.34 -2.39 -0.02 1.85 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.20 344.65 5.09 -68.11 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.91 Total: 10.11 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.41 Total: -16.95 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.30 Total: -59.22 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.41 Total: -47.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -73.20 5.09 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885531464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.991 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds