Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.43496 * 2 1 4 4 C 1.54097 * 110.48814 * 122.55216 * 2 1 3 5 5 O 1.43740 * 107.29636 * 116.65048 * 4 2 1 6 6 C 1.44383 * 106.97577 * 26.50658 * 5 4 2 7 7 H 1.08998 * 110.61482 * 78.44658 * 6 5 4 8 8 C 1.53009 * 110.61725 * 201.44360 * 6 5 4 9 9 C 1.50703 * 109.46888 * 293.54824 * 8 6 5 10 10 O 1.20824 * 120.00294 * 354.55087 * 9 8 6 11 11 O 1.34223 * 119.99687 * 174.54755 * 9 8 6 12 12 C 1.45204 * 117.00017 * 184.93994 * 11 9 8 13 13 C 1.53003 * 109.47138 * 184.41583 * 12 11 9 14 14 C 1.50695 * 115.55211 * 64.76964 * 13 12 11 15 15 H 1.08001 * 119.99885 * 266.65968 * 14 13 12 16 16 C 1.37881 * 119.99837 * 86.64966 * 14 13 12 17 17 N 1.31517 * 119.99622 * 178.61717 * 16 14 13 18 18 Si 1.86795 * 120.00097 * 358.61856 * 16 14 13 19 19 H 1.48505 * 109.47065 * 91.20113 * 18 16 14 20 20 H 1.48500 * 109.47234 * 211.19844 * 18 16 14 21 21 H 1.48498 * 109.47313 * 331.20235 * 18 16 14 22 22 C 1.52999 * 117.49728 * 279.09596 * 13 12 11 23 23 C 1.52996 * 117.49674 * 210.43912 * 13 12 11 24 24 C 1.54817 * 110.48602 * 237.45738 * 2 1 3 25 25 H 1.09000 * 109.47322 * 60.70066 * 1 2 3 26 26 H 1.09004 * 109.47246 * 180.70165 * 1 2 3 27 27 H 1.08995 * 109.47323 * 300.69481 * 1 2 3 28 28 H 1.09007 * 109.47133 * 59.30295 * 3 2 1 29 29 H 1.09000 * 109.47253 * 179.29692 * 3 2 1 30 30 H 1.08996 * 109.47414 * 299.30097 * 3 2 1 31 31 H 1.09005 * 109.87562 * 236.06544 * 4 2 1 32 32 H 1.08997 * 109.88018 * 357.06499 * 4 2 1 33 33 H 1.09005 * 109.46948 * 53.54510 * 8 6 5 34 34 H 1.08997 * 109.46783 * 173.54499 * 8 6 5 35 35 H 1.09000 * 109.47390 * 304.41629 * 12 11 9 36 36 H 1.09001 * 109.46844 * 64.41340 * 12 11 9 37 37 H 0.96995 * 119.99594 * 180.02562 * 17 16 14 38 38 H 1.09000 * 117.50281 * 0.02562 * 22 13 12 39 39 H 1.09002 * 117.49656 * 145.02242 * 22 13 12 40 40 H 1.08998 * 117.49934 * 214.98361 * 23 13 12 41 41 H 1.09006 * 117.50120 * 359.97438 * 23 13 12 42 42 H 1.08998 * 110.90614 * 338.64278 * 24 2 1 43 43 H 1.09007 * 110.90354 * 102.24107 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0693 -0.7767 1.2167 5 8 2.7956 -1.9101 0.7126 6 6 3.2659 -1.5568 -0.6060 7 1 4.1455 -0.9164 -0.5408 8 6 3.5719 -2.8134 -1.4235 9 6 4.7432 -3.5379 -0.8117 10 8 5.3403 -3.0456 0.1162 11 8 5.1231 -4.7300 -1.2976 12 6 6.1870 -5.4210 -0.5914 13 6 6.5559 -6.6984 -1.3484 14 6 7.1486 -6.4937 -2.7187 15 1 6.5100 -6.4998 -3.5897 16 6 8.5061 -6.2983 -2.8606 17 7 9.0270 -6.1468 -4.0586 18 14 9.6053 -6.2489 -1.3511 19 1 10.1095 -7.6153 -1.0610 20 1 10.7531 -5.3412 -1.6040 21 1 8.8274 -5.7511 -0.1883 22 6 5.6659 -7.9253 -1.1398 23 6 7.0680 -7.8834 -0.5272 24 6 2.0718 -0.7801 -1.2226 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3634 0.5246 0.8836 28 1 1.6994 1.9573 0.8837 29 1 3.1539 1.4154 0.0126 30 1 1.7198 1.9498 -0.8961 31 1 2.7351 -0.1388 1.7981 32 1 1.2401 -1.1121 1.8396 33 1 2.7000 -3.4677 -1.4241 34 1 3.8144 -2.5303 -2.4478 35 1 7.0606 -4.7725 -0.5257 36 1 5.8493 -5.6783 0.4126 37 1 9.9820 -6.0097 -4.1584 38 1 4.8173 -7.8223 -0.4635 39 1 5.5093 -8.5845 -1.9936 40 1 7.8333 -8.5150 -0.9781 41 1 7.1425 -7.7528 0.5525 42 1 1.3196 -1.4673 -1.6100 43 1 2.4102 -0.0965 -2.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885630328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -118.889479 kcal Electronic energy + Delta-G solvation = -22618.695333 eV Core-core repulsion = 19243.579937 eV Total energy + Delta-G solvation = -3375.115395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35821 -39.46586 -37.08441 -35.38680 -34.73810 -32.40611 -32.08751 -28.23069 -27.68501 -26.81480 -26.00117 -25.16084 -22.13123 -21.63420 -20.26386 -19.46906 -19.10663 -17.20122 -16.78207 -16.44182 -15.79327 -15.65744 -15.32037 -15.02872 -14.65953 -14.08696 -13.87958 -13.70831 -13.59496 -13.03367 -12.92914 -12.62720 -12.44886 -12.23167 -11.96539 -11.83074 -11.75412 -11.55497 -11.13366 -11.01749 -10.92432 -10.83112 -10.78249 -10.53487 -10.23393 -9.98143 -9.87720 -9.65333 -9.57281 -9.00282 -8.57926 -8.54990 -6.10944 -4.13531 2.77345 3.21152 3.28797 3.38704 3.43276 3.73988 4.14567 4.41560 4.42065 4.56483 4.76269 4.87163 4.96027 5.03433 5.08483 5.15981 5.27464 5.36627 5.38392 5.39381 5.45569 5.54818 5.61872 5.62966 5.68039 5.73865 5.82860 5.85645 5.92754 5.99979 6.03234 6.03702 6.17181 6.34126 6.44338 6.69404 6.84353 6.96111 7.09587 7.24655 7.71097 8.38141 8.52022 8.93751 9.51609 11.00947 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029353 B = 0.003600 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.687612 B = 7776.080567 C = 7976.434193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.090 3.910 7 H 0.080 0.920 8 C -0.109 4.109 9 C 0.456 3.544 10 O -0.514 6.514 11 O -0.334 6.334 12 C 0.109 3.891 13 C -0.005 4.005 14 C -0.481 4.481 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.260 1.260 22 C -0.173 4.173 23 C -0.192 4.192 24 C -0.142 4.142 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.934 12.067 7.349 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.023 4.023 5 O -0.281 6.281 6 C 0.033 3.967 7 H 0.098 0.902 8 C -0.147 4.147 9 C 0.298 3.702 10 O -0.404 6.404 11 O -0.250 6.250 12 C 0.035 3.965 13 C -0.006 4.006 14 C -0.518 4.518 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.185 1.185 22 C -0.210 4.210 23 C -0.229 4.229 24 C -0.180 4.180 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.503 12.010 7.618 21.038 hybrid contribution 0.834 0.262 0.790 1.178 sum -14.669 12.272 8.408 20.892 Atomic orbital electron populations 1.21841 0.93348 1.02199 1.01961 1.21949 0.96665 0.96216 0.95370 1.21884 1.01250 0.94477 1.02060 1.23286 0.95556 0.88078 0.95347 1.88972 1.71713 1.36511 1.30943 1.22946 0.96631 0.94324 0.82827 0.90233 1.21410 0.96461 0.96203 1.00631 1.23390 0.84435 0.80861 0.81466 1.90626 1.54226 1.67343 1.28166 1.86522 1.52202 1.31064 1.55190 1.23001 0.87347 0.93748 0.92396 1.19331 1.00037 0.84697 0.96559 1.20230 0.92574 1.49489 0.89510 0.90095 1.24987 0.97888 0.94051 0.95674 1.69886 1.12599 1.49036 1.21878 0.86913 0.80334 0.78182 0.84228 1.20189 1.21829 1.18474 1.22818 0.92100 1.03861 1.02208 1.23001 0.98250 1.04181 0.97450 1.23360 0.97877 0.99208 0.97528 0.92285 0.92135 0.92441 0.92330 0.92207 0.92177 0.92397 0.89980 0.87244 0.86228 0.91441 0.93717 0.92529 0.90773 0.89167 0.88796 0.90755 0.89892 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.26 37.16 0.31 -0.62 16 2 C -0.10 -0.85 0.98 -152.98 -0.15 -1.00 16 3 C -0.14 -1.01 8.25 37.16 0.31 -0.71 16 4 C 0.05 0.58 7.04 37.73 0.27 0.84 16 5 O -0.36 -5.26 10.74 -42.55 -0.46 -5.72 16 6 C 0.09 1.14 2.79 -25.55 -0.07 1.06 16 7 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 8 C -0.11 -1.48 5.59 -27.88 -0.16 -1.63 16 9 C 0.46 8.74 7.83 36.01 0.28 9.02 16 10 O -0.51 -11.17 15.32 -22.42 -0.34 -11.51 16 11 O -0.33 -7.27 10.15 -39.24 -0.40 -7.67 16 12 C 0.11 2.49 4.99 37.16 0.19 2.68 16 13 C -0.01 -0.13 1.06 -155.66 -0.16 -0.29 16 14 C -0.48 -13.54 9.35 -34.44 -0.32 -13.86 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 18 Si 0.88 21.89 24.89 -169.99 -4.23 17.66 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.27 5.72 56.52 0.32 -5.95 16 22 C -0.17 -3.57 9.96 -26.70 -0.27 -3.83 16 23 C -0.19 -4.10 7.62 -26.70 -0.20 -4.30 16 24 C -0.14 -1.27 5.72 -24.60 -0.14 -1.41 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 32 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.66 6.45 -51.93 -0.34 1.32 16 36 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 40 H 0.09 2.07 7.30 -51.93 -0.38 1.69 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 43 H 0.08 0.64 7.86 -51.92 -0.41 0.24 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -32.92 346.69 -7.10 -40.03 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.45 Total: 0.44 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.23 Total: -11.95 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.20 Total: -24.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.23 Total: 17.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.92 -7.10 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885630328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.862 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds