Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.45209 * 109.47106 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99802 * 179.97438 * 12 11 10 14 14 O 1.20819 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99481 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.46689 * 180.02562 * 15 13 12 17 17 H 1.08991 * 110.27260 * 55.61793 * 16 15 13 18 18 C 1.54998 * 110.30241 * 177.79691 * 16 15 13 19 19 C 1.55431 * 101.01830 * 155.04896 * 18 16 15 20 20 C 1.53846 * 102.04705 * 326.32882 * 19 18 16 21 21 C 1.53189 * 114.62761 * 151.45154 * 20 19 18 22 22 C 1.53886 * 86.91851 * 90.96175 * 21 20 19 23 23 C 1.53218 * 114.58894 * 250.69226 * 20 19 18 24 24 O 1.42627 * 108.27320 * 21.02895 * 20 19 18 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.09007 * 109.46846 * 299.99645 * 15 13 12 33 33 H 1.08996 * 109.47779 * 59.99442 * 15 13 12 34 34 H 1.09003 * 111.10749 * 272.98728 * 18 16 15 35 35 H 1.08998 * 111.11340 * 37.10895 * 18 16 15 36 36 H 1.09001 * 110.91719 * 208.14153 * 19 18 16 37 37 H 1.09002 * 110.94960 * 84.53179 * 19 18 16 38 38 H 1.08997 * 113.64291 * 205.46521 * 21 20 19 39 39 H 1.08999 * 113.63964 * 336.45699 * 21 20 19 40 40 H 1.09007 * 113.59890 * 270.43299 * 22 21 20 41 41 H 1.08995 * 113.60289 * 139.58007 * 22 21 20 42 42 H 1.08993 * 113.64008 * 23.51240 * 23 20 19 43 43 H 1.08997 * 113.63939 * 154.41201 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 8 2.4236 -6.0908 -0.0213 13 6 1.9104 -7.3311 -0.0268 14 8 0.7126 -7.4894 -0.0276 15 6 2.8284 -8.5263 -0.0308 16 6 1.9950 -9.8093 -0.0374 17 1 1.3062 -9.8079 -0.8821 18 6 2.9203 -11.0513 -0.0975 19 6 2.0087 -12.1324 0.5475 20 6 1.2214 -11.3119 1.5837 21 6 -0.1747 -11.8564 1.9018 22 6 0.4887 -12.6655 3.0302 23 6 1.5966 -11.5975 3.0415 24 8 1.2698 -9.9397 1.1979 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 3.4580 -8.4978 -0.9202 33 1 3.4565 -8.5051 0.8597 34 1 3.1657 -11.3085 -1.1280 35 1 3.8238 -10.8968 0.4923 36 1 2.6050 -12.9044 1.0341 37 1 1.3389 -12.5698 -0.1929 38 1 -0.8693 -11.0963 2.2592 39 1 -0.5937 -12.4753 1.1084 40 1 0.8351 -13.6501 2.7158 41 1 -0.0977 -12.6957 3.9485 42 1 2.5988 -12.0085 3.1624 43 1 1.3960 -10.7648 3.7156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885641390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -135.447712 kcal Electronic energy + Delta-G solvation = -21800.419578 eV Core-core repulsion = 18424.586164 eV Total energy + Delta-G solvation = -3375.833414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86437 -39.95073 -37.07830 -36.11643 -33.94640 -32.70726 -31.74712 -31.02560 -27.23169 -26.05976 -25.85835 -23.44284 -22.91090 -21.82997 -20.44684 -20.15616 -19.19154 -17.44468 -17.13219 -16.43768 -16.31279 -16.06979 -15.77256 -15.28877 -14.71388 -14.44660 -14.13241 -13.77835 -13.37098 -12.93861 -12.69587 -12.47055 -12.40207 -12.16831 -12.04564 -11.82443 -11.78828 -11.61129 -11.31054 -11.25326 -10.96201 -10.87421 -10.61919 -10.59637 -10.57410 -10.31050 -10.20881 -9.67384 -9.55754 -9.46218 -9.12153 -8.37135 -6.01632 -4.04463 2.49185 2.95559 3.31315 3.38593 3.43084 3.48334 4.07686 4.20675 4.26183 4.43671 4.46202 4.50795 4.66460 4.74647 4.82018 5.00101 5.12470 5.18530 5.34325 5.34908 5.36203 5.38817 5.49323 5.52100 5.52488 5.60435 5.64693 5.71128 5.72125 5.80216 5.98579 6.04319 6.08006 6.58477 6.58780 6.92692 6.97851 7.04133 7.63407 7.74608 7.97050 8.07385 8.38580 9.02141 9.59665 11.09919 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039745 B = 0.002432 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.320865 B =11511.016153 C =11814.402476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.362 6.362 13 C 0.455 3.545 14 O -0.500 6.500 15 C -0.115 4.115 16 C 0.091 3.909 17 H 0.081 0.919 18 C -0.151 4.151 19 C -0.129 4.129 20 C 0.080 3.920 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.139 4.139 24 O -0.346 6.346 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -28.373 1.704 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.279 6.279 13 C 0.298 3.702 14 O -0.388 6.388 15 C -0.152 4.152 16 C 0.034 3.966 17 H 0.099 0.901 18 C -0.188 4.188 19 C -0.166 4.166 20 C 0.040 3.960 21 C -0.179 4.179 22 C -0.178 4.178 23 C -0.177 4.177 24 O -0.265 6.265 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.205 -28.083 1.816 28.618 hybrid contribution 0.292 0.901 -0.104 0.953 sum 5.497 -27.182 1.713 27.785 Atomic orbital electron populations 1.69983 1.06089 1.26618 1.50696 1.25043 0.94885 0.99386 0.95255 0.86488 0.80081 0.83566 0.77587 1.19676 1.20985 1.20978 1.21220 0.93150 0.90684 1.50764 0.92381 1.19060 0.93874 0.90793 0.97682 1.21753 0.99888 0.91101 1.01875 1.23457 0.91213 0.83661 1.02058 1.86485 1.42717 1.15308 1.83426 1.23392 0.88742 0.84945 0.73170 1.90680 1.16840 1.86705 1.44563 1.21574 0.97835 0.89514 1.06323 1.22798 0.92313 0.92622 0.88890 0.90119 1.23339 0.98814 0.94265 1.02418 1.22829 0.98164 0.97910 0.97744 1.23172 0.96212 0.82335 0.94302 1.23319 0.96703 0.99287 0.98579 1.22703 0.98178 0.97560 0.99373 1.23295 0.99004 0.99075 0.96335 1.88542 1.74966 1.24009 1.38944 0.92963 0.96227 0.96245 0.92221 0.92192 0.91612 0.91650 0.86590 0.87186 0.89477 0.89869 0.89768 0.90097 0.89126 0.91175 0.90113 0.90831 0.91158 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.33 5.53 -26.74 -0.15 -2.48 16 11 C 0.07 1.34 5.47 37.15 0.20 1.55 16 12 O -0.36 -6.34 10.22 -39.26 -0.40 -6.74 16 13 C 0.46 7.25 7.86 36.01 0.28 7.53 16 14 O -0.50 -9.57 15.28 -23.45 -0.36 -9.93 16 15 C -0.11 -1.21 5.56 -27.88 -0.15 -1.37 16 16 C 0.09 0.95 2.93 -25.68 -0.08 0.88 16 17 H 0.08 0.91 8.00 -51.93 -0.42 0.49 16 18 C -0.15 -1.02 6.58 -24.39 -0.16 -1.18 16 19 C -0.13 -0.88 6.13 -25.00 -0.15 -1.04 16 20 C 0.08 0.76 1.65 -89.97 -0.15 0.61 16 21 C -0.14 -1.26 7.60 -26.17 -0.20 -1.46 16 22 C -0.14 -0.99 7.88 -25.81 -0.20 -1.20 16 23 C -0.14 -1.17 7.51 -26.16 -0.20 -1.36 16 24 O -0.35 -4.51 10.19 -47.13 -0.48 -4.99 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.49 8.05 -51.93 -0.42 0.08 16 36 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 37 H 0.08 0.51 8.00 -51.93 -0.42 0.09 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 40 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -33.49 353.86 -9.22 -42.71 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.52 Total: -3.95 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.50 Total: -12.73 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.24 Total: -21.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.49 -9.22 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885641390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.739 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds