Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47075 * 179.97438 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47116 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.82465 * 305.70569 * 16 15 13 18 18 C 1.54455 * 109.83029 * 184.81417 * 16 15 13 19 19 C 1.55622 * 102.28740 * 219.18466 * 18 16 15 20 20 C 1.54090 * 100.84590 * 33.10674 * 19 18 16 21 21 C 1.52876 * 115.02521 * 94.69194 * 20 19 18 22 22 C 1.53934 * 86.81231 * 91.88177 * 21 20 19 23 23 C 1.52864 * 115.03736 * 194.81589 * 20 19 18 24 24 O 1.42650 * 106.36417 * 324.77286 * 20 19 18 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09000 * 109.47303 * 300.00327 * 15 13 12 33 33 H 1.09003 * 109.46535 * 60.00663 * 15 13 12 34 34 H 1.09000 * 110.82960 * 337.34747 * 18 16 15 35 35 H 1.09001 * 110.82498 * 100.91937 * 18 16 15 36 36 H 1.08999 * 111.08268 * 275.22435 * 19 18 16 37 37 H 1.09000 * 111.20994 * 151.04218 * 19 18 16 38 38 H 1.08997 * 113.65604 * 206.36270 * 21 20 19 39 39 H 1.09000 * 113.65517 * 337.40218 * 21 20 19 40 40 H 1.09000 * 113.59269 * 270.16989 * 22 21 20 41 41 H 1.09003 * 113.66412 * 139.36185 * 22 21 20 42 42 H 1.09001 * 113.66410 * 22.59880 * 23 20 19 43 43 H 1.08998 * 113.66114 * 153.55814 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4240 -6.0907 0.0006 13 6 1.9109 -7.3310 0.0016 14 8 0.7131 -7.4894 0.0024 15 6 2.8290 -8.5262 0.0004 16 6 1.9957 -9.8094 0.0013 17 1 1.2934 -9.7936 0.8347 18 6 2.9248 -11.0374 0.1220 19 6 2.2525 -12.0574 -0.8420 20 6 1.6876 -11.1103 -1.9183 21 6 2.5874 -10.9066 -3.1372 22 6 1.8296 -12.0794 -3.7852 23 6 0.6532 -11.7370 -2.8531 24 8 1.2794 -9.9254 -1.2367 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.4565 -8.5015 -0.8905 33 1 3.4590 -8.5011 0.8896 34 1 3.9333 -10.7948 -0.2127 35 1 2.9350 -11.4165 1.1439 36 1 1.4538 -12.6035 -0.3402 37 1 2.9870 -12.7418 -1.2667 38 1 2.4314 -9.9530 -3.6416 39 1 3.6392 -11.1185 -2.9448 40 1 2.2771 -13.0526 -3.5834 41 1 1.6080 -11.9268 -4.8415 42 1 0.1583 -12.6129 -2.4337 43 1 -0.0469 -11.0168 -3.2765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885641391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -135.336233 kcal Electronic energy + Delta-G solvation = -21895.152099 eV Core-core repulsion = 18519.323519 eV Total energy + Delta-G solvation = -3375.828580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94649 -39.93719 -37.07115 -36.10701 -33.94549 -32.72609 -31.74067 -30.99414 -27.25292 -26.14779 -25.85456 -23.47689 -22.95745 -21.75077 -20.45350 -20.17285 -19.18323 -17.38261 -17.06824 -16.48393 -16.37033 -16.06929 -15.77832 -15.42132 -14.65878 -14.44206 -14.18075 -13.67410 -13.38187 -12.96436 -12.68306 -12.46732 -12.37733 -12.17179 -12.05564 -11.80749 -11.78575 -11.66526 -11.37212 -11.26466 -10.96187 -10.86011 -10.61728 -10.58238 -10.56897 -10.30699 -10.19888 -9.67308 -9.60387 -9.45663 -9.12135 -8.37142 -6.01624 -4.04520 2.50202 2.96426 3.31258 3.38528 3.42997 3.51375 4.04734 4.23227 4.26512 4.40234 4.45272 4.47500 4.67250 4.71770 4.87882 5.00196 5.11465 5.17154 5.33637 5.34303 5.35960 5.39700 5.47279 5.49583 5.50615 5.59405 5.64754 5.70539 5.71512 5.81517 5.96775 6.04958 6.08146 6.58726 6.59006 6.93140 6.98137 7.04202 7.63372 7.74605 7.97051 8.08449 8.38578 9.02099 9.59654 11.09937 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.002490 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.209643 B =11241.877031 C =11449.611178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.363 6.363 13 C 0.456 3.544 14 O -0.500 6.500 15 C -0.126 4.126 16 C 0.092 3.908 17 H 0.090 0.910 18 C -0.149 4.149 19 C -0.129 4.129 20 C 0.077 3.923 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.129 4.129 24 O -0.343 6.343 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -27.967 -2.681 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.280 6.280 13 C 0.298 3.702 14 O -0.388 6.388 15 C -0.163 4.163 16 C 0.034 3.966 17 H 0.107 0.893 18 C -0.187 4.187 19 C -0.167 4.167 20 C 0.037 3.963 21 C -0.188 4.188 22 C -0.177 4.177 23 C -0.166 4.166 24 O -0.261 6.261 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.359 -27.698 -2.750 28.551 hybrid contribution 0.407 0.970 0.079 1.055 sum 6.766 -26.728 -2.671 27.700 Atomic orbital electron populations 1.69981 1.06087 1.26624 1.50700 1.25041 0.94882 0.99379 0.95252 0.86490 0.80079 0.83575 0.77590 1.19678 1.20974 1.20982 1.21217 0.93146 0.90690 1.50765 0.92391 1.19058 0.93873 0.90790 0.97684 1.21750 0.99885 0.91113 1.01858 1.23454 0.91217 0.83681 1.02054 1.86484 1.42721 1.15332 1.83443 1.23398 0.88750 0.84913 0.73133 1.90679 1.16838 1.86704 1.44565 1.21839 0.98104 0.90341 1.06055 1.22589 0.93031 0.92256 0.88748 0.89254 1.23227 0.99670 0.94690 1.01107 1.22935 1.00617 0.97449 0.95660 1.23181 0.95827 0.85759 0.91527 1.23356 0.98930 0.99640 0.96904 1.22728 0.97215 0.98349 0.99437 1.23050 0.96935 1.00397 0.96254 1.88543 1.62839 1.42245 1.32494 0.92959 0.96234 0.96237 0.92228 0.92217 0.91627 0.91651 0.87491 0.86895 0.89990 0.89523 0.89961 0.89713 0.89181 0.91160 0.90078 0.90781 0.90907 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.33 5.53 -26.74 -0.15 -2.48 16 11 C 0.07 1.35 5.47 37.16 0.20 1.55 16 12 O -0.36 -6.38 10.22 -39.26 -0.40 -6.78 16 13 C 0.46 7.30 7.85 36.01 0.28 7.58 16 14 O -0.50 -9.61 15.24 -23.53 -0.36 -9.97 16 15 C -0.13 -1.34 5.39 -27.88 -0.15 -1.49 16 16 C 0.09 0.96 3.05 -25.97 -0.08 0.88 16 17 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 18 C -0.15 -1.00 6.57 -24.57 -0.16 -1.16 16 19 C -0.13 -0.87 6.21 -24.77 -0.15 -1.03 16 20 C 0.08 0.71 1.44 -90.19 -0.13 0.58 16 21 C -0.15 -1.24 7.58 -26.31 -0.20 -1.44 16 22 C -0.14 -0.96 7.90 -25.76 -0.20 -1.16 16 23 C -0.13 -1.09 7.64 -26.30 -0.20 -1.29 16 24 O -0.34 -4.45 10.18 -47.45 -0.48 -4.94 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.43 8.04 -51.93 -0.42 0.02 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.50 354.03 -9.22 -42.73 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -7.54 Total: -3.99 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.49 Total: -12.68 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.24 Total: -21.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.50 -9.22 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885641391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.610 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds