Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48500 * 109.46975 * 269.99697 * 3 2 1 5 5 H 1.48500 * 109.47367 * 29.99926 * 3 2 1 6 6 H 1.48500 * 109.46842 * 149.99836 * 3 2 1 7 7 C 1.37872 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99834 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00222 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.45193 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.34229 * 117.00149 * 180.02562 * 12 11 10 14 14 O 1.20824 * 119.99779 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00037 * 179.97438 * 13 12 11 16 16 H 1.08995 * 109.55479 * 299.79625 * 15 13 12 17 17 C 1.53156 * 109.55221 * 60.00113 * 15 13 12 18 18 C 1.53045 * 109.40917 * 178.47011 * 17 15 13 19 19 O 1.43049 * 109.44296 * 300.67002 * 18 17 15 20 20 C 1.42586 * 113.84377 * 58.73096 * 19 18 17 21 21 C 1.53425 * 113.56489 * 73.86923 * 20 19 18 22 22 C 1.53843 * 86.97450 * 89.48168 * 21 20 19 23 23 C 1.53568 * 113.54168 * 171.78504 * 20 19 18 24 24 C 1.52808 * 112.94100 * 302.89448 * 20 19 18 25 25 H 0.97003 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46802 * 59.99937 * 9 7 2 27 27 H 1.08998 * 109.46963 * 299.99901 * 9 7 2 28 28 H 1.09004 * 109.47170 * 60.00343 * 10 9 7 29 29 H 1.08994 * 109.47193 * 300.00398 * 10 9 7 30 30 H 1.09004 * 109.46481 * 60.00287 * 11 10 9 31 31 H 1.08999 * 109.47073 * 300.00801 * 11 10 9 32 32 H 1.08993 * 109.48404 * 58.48193 * 17 15 13 33 33 H 1.09000 * 109.48514 * 298.45088 * 17 15 13 34 34 H 1.09001 * 109.47818 * 180.68422 * 18 17 15 35 35 H 1.09003 * 109.48271 * 60.66439 * 18 17 15 36 36 H 1.08993 * 113.62837 * 334.95825 * 21 20 19 37 37 H 1.08994 * 113.70586 * 204.01635 * 21 20 19 38 38 H 1.09002 * 113.60407 * 139.72534 * 22 21 20 39 39 H 1.08998 * 113.60318 * 270.51535 * 22 21 20 40 40 H 1.09006 * 113.62895 * 156.00176 * 23 20 19 41 41 H 1.09002 * 113.68492 * 24.99643 * 23 20 19 42 42 H 1.09003 * 109.56420 * 173.77050 * 24 20 19 43 43 H 1.09006 * 109.56089 * 294.11292 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0022 12 8 6.0355 -4.0055 0.0027 13 6 7.3662 -4.1814 0.0033 14 8 8.1022 -3.2232 0.0029 15 6 7.9422 -5.5740 0.0044 16 1 7.6097 -6.1056 0.8959 17 6 7.4717 -6.3243 -1.2452 18 6 8.0889 -7.7247 -1.2601 19 8 9.5153 -7.6163 -1.2608 20 6 10.0402 -6.9090 -0.1395 21 6 9.9919 -7.7099 1.1683 22 6 11.3853 -8.2455 0.7964 23 6 11.5715 -6.9673 -0.0395 24 6 9.4733 -5.4961 -0.0080 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6805 -0.8888 28 1 3.6586 -3.1510 -0.8876 29 1 3.6578 -3.1498 0.8924 30 1 5.9148 -2.1221 0.8919 31 1 5.9148 -2.1234 -0.8881 32 1 7.7847 -5.7795 -2.1357 33 1 6.3848 -6.4063 -1.2323 34 1 7.7645 -8.2554 -2.1552 35 1 7.7666 -8.2736 -0.3753 36 1 9.2182 -8.4774 1.1822 37 1 9.9874 -7.0877 2.0632 38 1 12.0666 -8.3156 1.6445 39 1 11.3575 -9.1571 0.1996 40 1 12.0047 -6.1384 0.5204 41 1 12.0665 -7.1387 -0.9954 42 1 9.8235 -5.0473 0.9215 43 1 9.8012 -4.8912 -0.8535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885661629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = -134.031746 kcal Electronic energy + Delta-G solvation = -22205.747992 eV Core-core repulsion = 18829.975979 eV Total energy + Delta-G solvation = -3375.772013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18094 -40.03016 -36.79278 -36.46323 -34.26483 -33.98710 -31.84714 -30.07223 -27.88974 -26.19629 -26.09626 -23.67299 -23.20957 -21.92827 -20.48541 -20.00315 -19.43043 -17.66293 -16.98825 -16.59490 -16.45720 -16.41143 -15.60935 -15.33039 -14.80530 -14.49169 -14.26200 -14.11332 -13.75161 -13.44818 -13.05662 -12.76505 -12.73572 -12.34495 -12.04769 -11.99060 -11.82041 -11.40067 -11.21218 -11.17410 -11.07701 -11.05996 -10.95475 -10.55623 -10.45740 -10.33312 -10.01308 -9.84689 -9.76456 -9.61435 -9.27125 -8.58746 -6.09009 -4.08167 2.21821 2.74038 3.28283 3.28535 3.35965 3.39316 4.06574 4.18895 4.39662 4.40033 4.41135 4.45097 4.51348 4.66243 4.87216 5.00724 5.03289 5.19110 5.24215 5.31065 5.32200 5.38730 5.42476 5.45469 5.46391 5.55052 5.56094 5.61551 5.75724 5.82222 5.83907 5.93988 5.97025 6.32760 6.35912 6.64153 6.77758 6.93174 7.18410 7.29817 7.70049 7.83690 8.47565 8.95052 9.52479 11.04121 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042819 B = 0.002725 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.764871 B =10274.314342 C =10605.742954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.065 3.935 12 O -0.354 6.354 13 C 0.462 3.538 14 O -0.511 6.511 15 C -0.081 4.081 16 H 0.109 0.891 17 C -0.149 4.149 18 C 0.063 3.937 19 O -0.356 6.356 20 C 0.093 3.907 21 C -0.166 4.166 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.263 -17.491 0.487 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.008 4.008 12 O -0.271 6.271 13 C 0.305 3.695 14 O -0.399 6.399 15 C -0.100 4.100 16 H 0.127 0.873 17 C -0.187 4.187 18 C -0.013 4.013 19 O -0.275 6.275 20 C 0.053 3.947 21 C -0.204 4.204 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.398 -17.126 0.341 28.197 hybrid contribution 0.041 1.302 0.198 1.318 sum 22.439 -15.825 0.539 27.463 Atomic orbital electron populations 1.69911 1.06275 1.26990 1.50818 1.25018 0.94767 0.99188 0.94452 0.86781 0.80366 0.83570 0.78609 1.20196 1.21257 1.18995 1.21049 0.89019 0.94667 1.51239 0.90800 1.19522 0.97553 0.91076 0.96664 1.21555 0.88716 1.00794 1.02797 1.23503 0.97104 0.78133 1.02055 1.86494 1.23323 1.34243 1.83012 1.23528 0.81410 0.92088 0.72515 1.90650 1.60751 1.43122 1.45406 1.21090 0.96313 0.90898 1.01704 0.87319 1.22185 1.02643 0.96849 0.96990 1.22610 0.80498 0.95441 1.02765 1.87922 1.20625 1.75267 1.43638 1.22294 0.95144 0.90331 0.86893 1.23525 0.98493 1.00435 0.97953 1.22783 0.96761 0.97827 0.99825 1.22985 0.93206 0.98723 1.01226 1.21963 0.92284 0.96761 1.04535 0.92629 0.96301 0.96723 0.91548 0.91525 0.91565 0.91571 0.90310 0.88886 0.88016 0.92536 0.90844 0.89154 0.91287 0.89807 0.88660 0.90331 0.89750 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -2.00 5.53 -26.73 -0.15 -2.14 16 11 C 0.07 1.13 5.47 37.16 0.20 1.34 16 12 O -0.35 -5.61 10.15 -39.26 -0.40 -6.00 16 13 C 0.46 6.66 7.26 36.01 0.26 6.92 16 14 O -0.51 -8.72 15.68 -18.75 -0.29 -9.01 16 15 C -0.08 -0.84 2.64 -91.52 -0.24 -1.08 16 16 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 17 C -0.15 -1.37 5.30 -26.63 -0.14 -1.51 16 18 C 0.06 0.50 6.73 37.18 0.25 0.75 16 19 O -0.36 -3.44 10.44 -35.23 -0.37 -3.81 16 20 C 0.09 0.80 1.03 -90.20 -0.09 0.70 16 21 C -0.17 -1.18 7.12 -26.07 -0.19 -1.37 16 22 C -0.13 -0.89 8.01 -25.85 -0.21 -1.10 16 23 C -0.12 -0.91 7.48 -25.99 -0.19 -1.10 16 24 C -0.12 -1.15 3.90 -26.66 -0.10 -1.25 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 31 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.38 7.21 -51.93 -0.37 0.01 16 36 H 0.07 0.51 7.26 -51.93 -0.38 0.13 16 37 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 43 H 0.08 0.93 7.97 -51.93 -0.41 0.51 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.04 345.29 -8.32 -40.35 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -7.42 Total: -3.32 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.14 Total: -13.50 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.06 Total: -18.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.04 -8.32 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885661629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.677 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds