Wall clock time and date at job start Tue Mar 31 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47227 * 120.00115 * 2 1 3 5 5 N 1.29993 * 126.21727 * 300.04038 * 4 2 1 6 6 O 1.21283 * 110.46354 * 179.69277 * 5 4 2 7 7 C 1.34013 * 109.74952 * 0.43003 * 6 5 4 8 8 N 1.37967 * 126.65149 * 179.83819 * 7 6 5 9 9 C 1.34775 * 120.00095 * 359.69030 * 8 7 6 10 10 O 1.21562 * 119.99982 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99848 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00110 * 0.02562 * 11 9 8 13 13 C 1.46497 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.08995 * 109.47498 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.47400 * 239.99991 * 13 11 9 16 16 C 1.50703 * 109.46673 * 120.00587 * 13 11 9 17 17 H 1.07997 * 120.00693 * 35.01586 * 16 13 11 18 18 C 1.37878 * 119.99760 * 215.01570 * 16 13 11 19 19 N 1.31515 * 120.00367 * 184.89790 * 18 16 13 20 20 Si 1.86802 * 120.00243 * 4.90033 * 18 16 13 21 21 H 1.48496 * 109.47292 * 84.79622 * 20 18 16 22 22 H 1.48494 * 109.47356 * 204.80068 * 20 18 16 23 23 H 1.48500 * 109.46883 * 324.79855 * 20 18 16 24 24 N 1.32017 * 106.69057 * 359.57771 * 7 6 5 25 25 H 1.09006 * 109.47063 * 300.00300 * 1 2 3 26 26 H 1.09002 * 109.47176 * 59.99868 * 1 2 3 27 27 H 1.08995 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47076 * 240.00300 * 2 1 3 29 29 H 1.08998 * 109.46804 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47265 * 300.00078 * 3 2 1 31 31 H 1.08997 * 109.46962 * 60.00230 * 3 2 1 32 32 H 0.96998 * 119.99304 * 179.68920 * 8 7 6 33 33 H 1.08990 * 109.47250 * 269.99685 * 12 11 9 34 34 H 1.09005 * 109.47370 * 30.00073 * 12 11 9 35 35 H 1.09000 * 109.47129 * 149.99436 * 12 11 9 36 36 H 1.09001 * 109.46697 * 54.84359 * 15 13 11 37 37 H 1.08998 * 109.47282 * 294.84618 * 15 13 11 38 38 H 1.08997 * 109.47264 * 174.84355 * 15 13 11 39 39 H 0.96998 * 120.00662 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7934 -0.3738 2.4631 6 8 2.3329 -1.1469 3.2260 7 6 2.9990 -2.0789 2.5304 8 7 3.7365 -3.1232 3.0490 9 6 3.8431 -3.2752 4.3839 10 8 3.2898 -2.4920 5.1310 11 7 4.5632 -4.2957 4.8905 12 6 5.2305 -5.2392 3.9901 13 6 4.6795 -4.4607 6.3415 14 1 4.1212 -3.6703 6.8430 15 6 6.1526 -4.3815 6.7473 16 6 4.1199 -5.8017 6.7409 17 1 4.2389 -6.6530 6.0872 18 6 3.4558 -5.9417 7.9411 19 7 3.0519 -7.1298 8.3346 20 14 3.1297 -4.4437 9.0085 21 1 1.8838 -3.7747 8.5553 22 1 2.9772 -4.8678 10.4234 23 1 4.2688 -3.4978 8.8952 24 7 2.8077 -1.8071 1.2527 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 4.1783 -3.7478 2.4528 33 1 4.5566 -6.0660 3.7660 34 1 5.5007 -4.7297 3.0651 35 1 6.1308 -5.6239 4.4693 36 1 6.5817 -3.4501 6.3778 37 1 6.6933 -5.2256 6.3193 38 1 6.2322 -4.4123 7.8340 39 1 2.5844 -7.2283 9.1787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888393388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:04 Heat of formation + Delta-G solvation = 48.483143 kcal Electronic energy + Delta-G solvation = -22485.146285 eV Core-core repulsion = 19046.041119 eV Total energy + Delta-G solvation = -3439.105166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.30018 -40.19830 -36.85968 -36.26851 -35.36997 -33.88136 -32.73521 -30.98410 -29.90070 -27.44102 -26.59372 -25.37424 -24.67610 -23.90325 -22.34838 -20.30285 -19.28696 -18.45316 -17.97358 -17.70900 -16.93316 -16.33124 -15.55127 -15.18613 -15.06740 -14.40575 -14.25015 -13.62860 -13.50940 -13.12045 -12.60907 -12.47780 -12.46384 -12.40537 -12.02886 -11.94485 -11.90387 -11.66070 -11.53327 -11.28307 -11.14499 -10.86305 -10.79208 -10.75975 -10.57341 -9.96965 -9.86843 -9.37338 -8.95348 -8.69495 -7.94531 -6.26017 -4.29684 1.34777 1.88658 2.28179 3.18929 3.29142 3.34602 3.42359 3.44221 3.74756 4.12342 4.31565 4.44969 4.81977 4.82928 4.95144 5.12602 5.31363 5.36168 5.44211 5.55953 5.61479 5.74189 5.75264 5.85149 5.95198 5.99563 6.09447 6.16502 6.25316 6.27812 6.41307 6.54380 6.78610 7.06271 7.27115 7.47559 7.93449 8.31576 8.42984 8.66724 8.75714 9.35260 10.85327 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.004039 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.151320 B = 6930.391526 C = 7310.011201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.145 4.145 4 C 0.192 3.808 5 N -0.390 5.390 6 O 0.088 5.912 7 C 0.438 3.562 8 N -0.619 5.619 9 C 0.692 3.308 10 O -0.555 6.555 11 N -0.586 5.586 12 C 0.078 3.922 13 C 0.235 3.765 14 H 0.068 0.932 15 C -0.148 4.148 16 C -0.529 4.529 17 H 0.080 0.920 18 C 0.082 3.918 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.262 1.262 24 N -0.522 5.522 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.432 0.568 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 10.105 -16.032 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 C -0.203 4.203 4 C -0.082 4.082 5 N -0.105 5.105 6 O 0.037 5.963 7 C 0.128 3.872 8 N -0.284 5.284 9 C 0.392 3.608 10 O -0.429 6.429 11 N -0.321 5.321 12 C -0.065 4.065 13 C 0.135 3.865 14 H 0.086 0.914 15 C -0.207 4.207 16 C -0.567 4.567 17 H 0.098 0.902 18 C -0.123 4.123 19 N -0.523 5.523 20 Si 0.700 3.300 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.187 1.187 24 N -0.267 5.267 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.275 0.725 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.851 11.083 -15.340 18.944 hybrid contribution 0.157 -0.094 0.435 0.472 sum 1.008 10.989 -14.905 18.545 Atomic orbital electron populations 1.21851 0.92954 1.02669 1.02881 1.19513 0.96324 0.95238 0.90981 1.21847 1.01475 0.94084 1.02883 1.25403 0.96056 0.92120 0.94626 1.74592 1.19309 1.14169 1.02437 1.85663 1.48232 1.29187 1.33220 1.23849 0.90586 0.88098 0.84636 1.41993 1.51144 1.26688 1.08537 1.16058 0.81351 0.83511 0.79851 1.91012 1.50321 1.45354 1.56225 1.47894 1.49614 1.25261 1.09296 1.21682 0.99012 0.93441 0.92397 1.19420 0.94010 0.98942 0.74081 0.91396 1.22232 0.98019 0.99044 1.01373 1.21093 1.36683 0.93781 1.05121 0.90198 1.24959 0.94013 0.95901 0.97411 1.69873 1.37846 1.22345 1.22203 0.86912 0.80368 0.83308 0.79459 1.19411 1.21227 1.18672 1.72188 1.23423 1.17372 1.13699 0.91745 0.91206 0.92215 0.88126 0.92292 0.91211 0.91760 0.72531 0.91979 0.93183 0.89802 0.95243 0.92887 0.92128 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.17 37.16 0.34 -0.98 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.32 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.19 2.81 6.71 -156.48 -1.05 1.76 16 5 N -0.39 -6.67 12.15 31.12 0.38 -6.29 16 6 O 0.09 1.67 9.69 -4.46 -0.04 1.63 16 7 C 0.44 7.40 8.99 -87.10 -0.78 6.62 16 8 N -0.62 -9.68 5.23 -17.65 -0.09 -9.77 16 9 C 0.69 13.63 8.24 -86.92 -0.72 12.91 16 10 O -0.56 -13.23 14.48 -16.30 -0.24 -13.47 16 11 N -0.59 -11.25 2.75 -181.02 -0.50 -11.74 16 12 C 0.08 1.10 9.30 59.85 0.56 1.66 16 13 C 0.24 5.33 2.30 -69.08 -0.16 5.17 16 14 H 0.07 1.71 4.05 -51.93 -0.21 1.50 16 15 C -0.15 -2.88 9.04 37.16 0.34 -2.54 16 16 C -0.53 -13.80 8.82 -34.44 -0.30 -14.10 16 17 H 0.08 2.19 7.67 -52.49 -0.40 1.79 16 18 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 19 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 20 Si 0.87 21.54 26.99 -169.99 -4.59 16.95 16 21 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.19 6.82 56.52 0.39 -5.81 16 24 N -0.52 -8.02 11.59 -12.97 -0.15 -8.17 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.43 5.14 6.55 -40.82 -0.27 4.87 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.50 6.36 -51.93 -0.33 0.17 16 35 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.94 6.88 -51.93 -0.36 0.58 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -32.39 326.25 -6.67 -39.07 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.29 Total: 0.53 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -1.85 Total: 11.41 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.41 Total: -61.04 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.28 Total: -11.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.59 Total: 16.95 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.39 -6.67 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888393388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.549 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds