Wall clock time and date at job start Tue Mar 31 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46898 * 2 1 4 4 C 1.50694 * 109.47431 * 119.99886 * 2 1 3 5 5 N 1.29998 * 126.21933 * 300.02846 * 4 2 1 6 6 O 1.21281 * 110.45916 * 179.67974 * 5 4 2 7 7 C 1.34009 * 109.75630 * 0.47325 * 6 5 4 8 8 N 1.37961 * 126.65399 * 179.80322 * 7 6 5 9 9 C 1.34775 * 120.00378 * 359.68018 * 8 7 6 10 10 O 1.21564 * 119.99873 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00363 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99781 * 0.02562 * 11 9 8 13 13 C 1.46500 * 120.00141 * 180.02562 * 11 9 8 14 14 H 1.09000 * 109.47175 * 359.97438 * 13 11 9 15 15 C 1.53006 * 109.46998 * 119.99854 * 13 11 9 16 16 C 1.50697 * 109.46896 * 239.99783 * 13 11 9 17 17 H 1.07994 * 120.00496 * 0.02562 * 16 13 11 18 18 C 1.37887 * 119.99690 * 179.97438 * 16 13 11 19 19 N 1.31507 * 120.00093 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99676 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47515 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46678 * 119.99923 * 20 18 16 23 23 H 1.48493 * 109.47346 * 239.99833 * 20 18 16 24 24 N 1.32018 * 106.69075 * 359.53538 * 7 6 5 25 25 H 1.08996 * 109.47231 * 59.99870 * 1 2 3 26 26 H 1.09002 * 109.46660 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47014 * 299.99615 * 1 2 3 28 28 H 1.09002 * 109.46738 * 240.00552 * 2 1 3 29 29 H 1.08994 * 109.46945 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46975 * 300.00415 * 3 2 1 31 31 H 1.09000 * 109.46915 * 59.99919 * 3 2 1 32 32 H 0.97005 * 119.99609 * 179.68052 * 8 7 6 33 33 H 1.09004 * 109.47130 * 270.00038 * 12 11 9 34 34 H 1.08997 * 109.47212 * 29.99790 * 12 11 9 35 35 H 1.09003 * 109.46772 * 150.00403 * 12 11 9 36 36 H 1.09001 * 109.47002 * 179.97438 * 15 13 11 37 37 H 1.08993 * 109.46955 * 300.00226 * 15 13 11 38 38 H 1.09000 * 109.47050 * 60.00054 * 15 13 11 39 39 H 0.96999 * 120.00118 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7937 -0.3735 2.4631 6 8 2.3330 -1.1469 3.2259 7 6 2.9994 -2.0786 2.5304 8 7 3.7374 -3.1225 3.0490 9 6 3.8444 -3.2745 4.3838 10 8 3.2901 -2.4919 5.1310 11 7 4.5657 -4.2940 4.8904 12 6 5.2341 -5.2367 3.9900 13 6 4.6815 -4.4594 6.3414 14 1 4.1223 -3.6696 6.8429 15 6 4.1150 -5.8220 6.7461 16 6 6.1320 -4.3794 6.7419 17 1 6.8917 -4.2207 5.9909 18 6 6.4892 -4.5078 8.0675 19 7 5.5641 -4.6995 8.9823 20 14 8.2873 -4.4078 8.5641 21 1 9.1229 -4.1870 7.3565 22 1 8.4774 -3.2791 9.5102 23 1 8.6908 -5.6772 9.2205 24 7 2.8080 -1.8071 1.2527 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 4.1794 -3.7472 2.4527 33 1 4.5611 -6.0644 3.7658 34 1 5.5036 -4.7269 3.0650 35 1 6.1348 -5.6204 4.4692 36 1 4.2015 -5.9453 7.8257 37 1 3.0659 -5.8798 6.4563 38 1 4.6746 -6.6116 6.2446 39 1 5.8154 -4.7902 9.9147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888393389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:08 Heat of formation + Delta-G solvation = 47.537082 kcal Electronic energy + Delta-G solvation = -22348.596138 eV Core-core repulsion = 18909.449947 eV Total energy + Delta-G solvation = -3439.146191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.26629 -40.10506 -36.83367 -36.14813 -35.29605 -33.84666 -32.88073 -30.71108 -29.25004 -27.42481 -26.46552 -25.32329 -24.64659 -23.85275 -22.32852 -20.38295 -19.26250 -18.42226 -17.93660 -17.51048 -16.65211 -16.15874 -15.32866 -15.13325 -15.04211 -14.41656 -14.35593 -13.60961 -13.41045 -13.07283 -12.68009 -12.46124 -12.36494 -11.92068 -11.89629 -11.82800 -11.67554 -11.59369 -11.26225 -11.14820 -10.94018 -10.83531 -10.82562 -10.72293 -10.37698 -10.26027 -9.82044 -9.29191 -8.90700 -8.52682 -7.85496 -6.16389 -4.25069 1.38436 1.94467 2.31257 3.21605 3.24985 3.30622 3.33109 3.51631 3.80364 4.18128 4.33317 4.50332 4.83721 4.85104 4.97404 5.15790 5.37724 5.38750 5.46284 5.57619 5.63466 5.77169 5.78984 5.88248 5.96804 6.08816 6.14050 6.30288 6.42450 6.67809 6.79449 6.94639 7.22135 7.47017 7.60828 7.90332 8.04683 8.26069 8.47509 8.68104 8.84027 9.41649 10.89161 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.003507 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.848638 B = 7981.925450 C = 8115.871715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.145 4.145 4 C 0.191 3.809 5 N -0.390 5.390 6 O 0.088 5.912 7 C 0.439 3.561 8 N -0.620 5.620 9 C 0.691 3.309 10 O -0.550 6.550 11 N -0.589 5.589 12 C 0.076 3.924 13 C 0.271 3.729 14 H 0.068 0.932 15 C -0.148 4.148 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.283 1.283 24 N -0.523 5.523 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.431 0.569 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.013 0.987 38 H 0.032 0.968 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 3.028 -17.029 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 C -0.203 4.203 4 C -0.083 4.083 5 N -0.105 5.105 6 O 0.038 5.962 7 C 0.129 3.871 8 N -0.285 5.285 9 C 0.391 3.609 10 O -0.423 6.423 11 N -0.323 5.323 12 C -0.068 4.068 13 C 0.171 3.829 14 H 0.086 0.914 15 C -0.206 4.206 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.209 1.209 24 N -0.268 5.268 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.273 0.727 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.032 0.968 38 H 0.051 0.949 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.734 4.096 -16.279 17.739 hybrid contribution 1.473 -0.641 0.139 1.612 sum -4.261 3.456 -16.139 17.046 Atomic orbital electron populations 1.21847 0.92995 1.02582 1.02878 1.19507 0.96276 0.95266 0.90986 1.21850 1.01542 0.94064 1.02875 1.25398 0.96117 0.92142 0.94634 1.74595 1.19427 1.14049 1.02408 1.85665 1.48261 1.29125 1.33185 1.23837 0.90599 0.88036 0.84614 1.42031 1.51159 1.26675 1.08645 1.16013 0.81494 0.83640 0.79753 1.91027 1.50522 1.44723 1.56050 1.47704 1.48844 1.25760 1.10032 1.21707 0.99371 0.92867 0.92819 1.19071 0.97267 0.95620 0.70911 0.91403 1.22118 0.95942 0.97687 1.04888 1.21324 0.91654 1.50922 0.93067 0.91977 1.24883 0.97886 0.94647 0.96232 1.69876 1.32486 1.48470 1.01441 0.86400 0.84384 0.77731 0.78638 1.19782 1.20834 1.20872 1.72188 1.23429 1.17503 1.13728 0.91227 0.92282 0.91741 0.88170 0.92254 0.91234 0.91731 0.72653 0.93038 0.93219 0.88877 0.88488 0.96764 0.94919 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -1.31 9.18 37.16 0.34 -0.97 16 4 C 0.19 2.81 6.71 -156.47 -1.05 1.76 16 5 N -0.39 -6.70 12.15 31.12 0.38 -6.33 16 6 O 0.09 1.70 9.69 -4.45 -0.04 1.66 16 7 C 0.44 7.49 8.99 -87.10 -0.78 6.71 16 8 N -0.62 -9.86 5.23 -17.65 -0.09 -9.95 16 9 C 0.69 13.92 8.24 -86.93 -0.72 13.21 16 10 O -0.55 -13.45 14.48 -16.30 -0.24 -13.68 16 11 N -0.59 -11.69 2.75 -181.01 -0.50 -12.18 16 12 C 0.08 1.11 9.20 59.85 0.55 1.66 16 13 C 0.27 6.55 2.64 -69.08 -0.18 6.37 16 14 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 15 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 16 C -0.53 -13.63 7.99 -34.44 -0.28 -13.90 16 17 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -24.18 11.32 55.43 0.63 -23.55 16 20 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 N -0.52 -8.11 11.59 -12.97 -0.15 -8.26 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.43 5.24 6.55 -40.82 -0.27 4.98 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 35 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 36 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -30.87 327.33 -7.31 -38.18 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.36 Total: 1.65 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -1.85 Total: 12.22 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.26 Total: -60.28 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.28 Total: -12.03 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.87 -7.31 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888393389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.719 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds