Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47138 * 2 1 4 4 C 1.46507 * 119.99507 * 269.99821 * 3 2 1 5 5 C 1.50699 * 109.46881 * 270.00041 * 4 3 2 6 6 H 1.07995 * 120.00312 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00005 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99678 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46822 * 60.00286 * 9 7 5 11 11 H 1.48503 * 109.47114 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47381 * 300.00242 * 9 7 5 13 13 C 1.34772 * 120.00350 * 89.99743 * 3 2 1 14 14 O 1.21569 * 120.00062 * 180.02562 * 13 3 2 15 15 N 1.34771 * 120.00052 * 0.02562 * 13 3 2 16 16 C 1.37967 * 119.99910 * 179.97438 * 15 13 3 17 17 N 1.32024 * 126.65272 * 180.30802 * 16 15 13 18 18 C 1.34338 * 105.52703 * 180.09364 * 17 16 15 19 19 C 1.50698 * 126.21508 * 179.88207 * 18 17 16 20 20 C 1.53006 * 109.47184 * 239.71292 * 19 18 17 21 21 C 1.52999 * 109.46824 * 119.72044 * 19 18 17 22 22 N 1.29998 * 107.56330 * 359.62211 * 18 17 16 23 23 O 1.21281 * 110.45946 * 0.24375 * 22 18 17 24 24 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47139 * 300.00618 * 1 2 3 26 26 H 1.08998 * 109.47030 * 60.00197 * 1 2 3 27 27 H 1.08993 * 109.47399 * 239.99194 * 2 1 3 28 28 H 1.09008 * 109.46793 * 119.99077 * 2 1 3 29 29 H 1.08994 * 109.47070 * 30.00224 * 4 3 2 30 30 H 1.09007 * 109.47028 * 150.00257 * 4 3 2 31 31 H 0.97003 * 119.99689 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00338 * 359.97438 * 15 13 3 33 33 H 1.08993 * 109.47304 * 359.71236 * 19 18 17 34 34 H 1.09001 * 109.46801 * 300.00442 * 20 19 18 35 35 H 1.09001 * 109.46998 * 60.00038 * 20 19 18 36 36 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47160 * 179.97438 * 21 19 18 38 38 H 1.09002 * 109.46719 * 299.99679 * 21 19 18 39 39 H 1.08993 * 109.47839 * 59.99520 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1495 2.3902 -2.8775 8 7 3.3494 3.1262 -3.6177 9 14 5.9139 2.0972 -3.4164 10 1 6.1417 0.6405 -3.5942 11 1 6.1614 2.7970 -4.7026 12 1 6.8410 2.6204 -2.3811 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1629 1.1671 15 7 2.0188 1.3812 2.3343 16 6 2.2492 2.0315 3.5291 17 7 2.0807 1.5363 4.7413 18 6 2.4252 2.5238 5.5843 19 6 2.4034 2.4575 7.0897 20 6 1.4586 3.5309 7.6339 21 6 3.8141 2.6979 7.6311 22 7 2.7860 3.5452 4.8655 23 8 2.6933 3.2862 3.6843 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5137 0.8901 29 1 1.5817 1.6876 -2.0284 30 1 2.0956 3.1410 -1.1386 31 1 3.6755 3.5166 -4.4437 32 1 1.6955 0.4667 2.3344 33 1 2.0558 1.4738 7.4050 34 1 1.8062 4.5147 7.3185 35 1 0.4536 3.3598 7.2481 36 1 1.4432 3.4832 8.7228 37 1 3.7983 2.6504 8.7200 38 1 4.4872 1.9332 7.2434 39 1 4.1617 3.6816 7.3158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888395055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = 42.857407 kcal Electronic energy + Delta-G solvation = -22343.782739 eV Core-core repulsion = 18904.433622 eV Total energy + Delta-G solvation = -3439.349116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.24699 -40.11077 -36.81966 -35.98391 -35.39825 -33.79210 -32.77765 -30.62325 -30.31535 -27.41388 -27.26484 -24.65150 -24.03718 -23.23349 -22.85224 -20.97957 -19.28749 -18.45894 -17.91776 -17.47569 -16.52339 -16.43755 -15.26147 -15.03214 -14.91287 -14.39245 -14.32335 -13.91291 -13.59646 -13.39929 -12.84495 -12.44919 -12.33506 -12.18200 -11.96336 -11.87649 -11.80714 -11.56547 -11.31570 -11.24915 -11.05312 -10.93107 -10.81711 -10.71377 -10.62854 -10.23393 -9.83370 -9.70112 -8.88350 -8.49571 -7.92874 -6.11414 -4.16791 1.40711 1.96515 2.33138 3.26987 3.29213 3.34135 3.37661 3.56022 3.80000 4.15767 4.40000 4.48922 4.84823 4.86251 4.97661 5.09998 5.23445 5.38684 5.40059 5.46786 5.52351 5.58741 5.64680 5.78580 5.81583 5.91470 5.97886 6.05327 6.12551 6.30895 6.33247 6.43694 7.07758 7.26197 7.38991 7.84045 8.10785 8.14432 8.49042 8.74145 8.90000 9.48603 10.96659 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.003993 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.849105 B = 7011.105965 C = 7715.474094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.260 3.740 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.692 3.308 14 O -0.539 6.539 15 N -0.621 5.621 16 C 0.439 3.561 17 N -0.524 5.524 18 C 0.191 3.809 19 C 0.000 4.000 20 C -0.145 4.145 21 C -0.145 4.145 22 N -0.390 5.390 23 O 0.089 5.911 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.430 0.570 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 -6.726 16.971 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.392 3.608 14 O -0.410 6.410 15 N -0.286 5.286 16 C 0.129 3.871 17 N -0.269 5.269 18 C -0.083 4.083 19 C -0.020 4.020 20 C -0.203 4.203 21 C -0.203 4.203 22 N -0.105 5.105 23 O 0.038 5.962 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.272 0.728 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.134 -5.285 17.182 18.696 hybrid contribution 0.769 -0.823 -0.749 1.353 sum -4.364 -6.109 16.434 18.067 Atomic orbital electron populations 1.22271 0.96167 1.01942 1.02778 1.21522 0.93964 0.83737 1.03077 1.47686 1.65967 1.13541 1.05536 1.19381 0.96644 0.93640 0.76227 1.21381 0.96800 1.32505 1.06529 0.92352 1.24913 0.97952 0.94730 0.96282 1.69914 1.35803 1.33061 1.14356 0.86536 0.84616 0.78271 0.77883 1.20211 1.21111 1.20120 1.15963 0.80012 0.85043 0.79740 1.91052 1.49703 1.15753 1.84534 1.42063 1.68598 1.17738 1.00209 1.23839 0.92046 0.83259 0.87933 1.72183 1.29582 1.28746 0.96402 1.25393 0.98160 0.85376 0.99394 1.19504 0.97889 1.01855 0.82769 1.21849 0.98878 0.98498 1.01074 1.21849 0.94573 1.02839 1.01081 1.74598 1.23930 1.23282 0.88670 1.85669 1.62358 1.27593 1.20564 0.91637 0.93037 0.91467 0.88722 0.92190 0.94141 0.93388 0.92507 0.72792 0.88180 0.91739 0.92283 0.91243 0.91240 0.92254 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.10 1.42 5.89 -4.04 -0.02 1.39 16 3 N -0.59 -11.63 2.46 -180.80 -0.44 -12.07 16 4 C 0.26 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.69 14.10 8.23 -86.93 -0.72 13.38 16 14 O -0.54 -13.51 14.73 -16.31 -0.24 -13.75 16 15 N -0.62 -9.97 5.23 -17.65 -0.09 -10.06 16 16 C 0.44 7.59 8.99 -87.10 -0.78 6.80 16 17 N -0.52 -8.19 11.59 -12.97 -0.15 -8.34 16 18 C 0.19 2.84 6.71 -156.47 -1.05 1.79 16 19 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 20 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 21 C -0.15 -1.34 9.17 37.16 0.34 -1.00 16 22 N -0.39 -6.82 12.15 31.12 0.38 -6.44 16 23 O 0.09 1.74 9.69 -4.43 -0.04 1.70 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.67 6.36 -51.92 -0.33 0.34 16 29 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.05 1.34 7.42 -51.92 -0.39 0.96 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.43 5.30 6.55 -40.82 -0.27 5.04 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -32.65 335.81 -7.68 -40.33 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.59 Total: -0.47 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.27 Total: 12.65 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.43 Total: -61.92 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.28 Total: -12.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.65 -7.68 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888395055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.190 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds