Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35733 * 116.99746 * 2 1 4 4 N 1.32214 * 119.69691 * 359.97041 * 3 2 1 5 5 C 1.31966 * 121.67356 * 180.02562 * 4 3 2 6 6 C 1.38061 * 120.87570 * 359.74866 * 5 4 3 7 7 C 1.38800 * 119.30830 * 0.50551 * 6 5 4 8 8 C 1.50695 * 120.76653 * 179.78057 * 7 6 5 9 9 N 1.46902 * 109.46785 * 259.71470 * 8 7 6 10 10 C 1.46900 * 111.00036 * 170.00040 * 9 8 7 11 11 C 1.50702 * 109.47220 * 288.07426 * 10 9 8 12 12 H 1.07995 * 120.00320 * 355.66669 * 11 10 9 13 13 C 1.37879 * 120.00085 * 175.67600 * 11 10 9 14 14 N 1.31519 * 119.99663 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47315 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47456 * 119.99479 * 15 13 11 18 18 H 1.48500 * 109.47076 * 239.99595 * 15 13 11 19 19 C 1.46898 * 111.00390 * 293.96018 * 9 8 7 20 20 C 1.52998 * 109.47150 * 172.40112 * 19 9 8 21 21 C 1.53006 * 109.46663 * 292.39768 * 19 9 8 22 22 C 1.38574 * 118.46079 * 359.50183 * 7 6 5 23 23 F 1.35098 * 120.46244 * 180.22740 * 22 7 6 24 24 H 1.08996 * 109.47749 * 300.00275 * 1 2 3 25 25 H 1.08995 * 109.47164 * 60.00537 * 1 2 3 26 26 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.56483 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.34821 * 180.28930 * 6 5 4 29 29 H 1.09007 * 109.47131 * 139.72357 * 8 7 6 30 30 H 1.08994 * 109.47320 * 19.71785 * 8 7 6 31 31 H 1.09003 * 109.47177 * 48.06940 * 10 9 8 32 32 H 1.08997 * 109.47461 * 168.06602 * 10 9 8 33 33 H 0.97002 * 119.99482 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47378 * 52.39965 * 19 9 8 35 35 H 1.09000 * 109.47671 * 67.61973 * 20 19 9 36 36 H 1.08995 * 109.47268 * 187.61993 * 20 19 9 37 37 H 1.09002 * 109.47016 * 307.62397 * 20 19 9 38 38 H 1.08992 * 109.46988 * 60.00238 * 21 19 9 39 39 H 1.08998 * 109.46623 * 179.97438 * 21 19 9 40 40 H 1.08998 * 109.47067 * 299.99807 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3192 2.3144 -0.0006 5 6 1.8773 3.5102 -0.0011 6 6 3.2507 3.6511 0.0041 7 6 4.0501 2.5164 -0.0007 8 6 5.5526 2.6319 -0.0001 9 7 6.0598 2.4287 -1.3638 10 6 7.4870 2.7655 -1.4503 11 6 7.6567 4.2603 -1.3606 12 1 6.7882 4.9010 -1.3208 13 6 8.9208 4.8100 -1.3294 14 7 9.9785 4.0297 -1.3775 15 14 9.1312 6.6627 -1.2190 16 1 7.7957 7.3111 -1.1790 17 1 9.8840 7.0028 0.0150 18 1 9.8809 7.1474 -2.4056 19 6 5.8151 1.0529 -1.8169 20 6 6.1814 0.9309 -3.2974 21 6 6.6728 0.0862 -0.9979 22 6 3.4345 1.2749 0.0000 23 9 4.1735 0.1439 0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2515 4.3904 -0.0012 28 1 3.6985 4.6339 0.0084 29 1 5.9750 1.8752 0.6611 30 1 5.8407 3.6228 0.3508 31 1 8.0232 2.2892 -0.6295 32 1 7.8872 2.4107 -2.4000 33 1 10.8678 4.4165 -1.3560 34 1 4.7617 0.8078 -1.6819 35 1 7.2592 1.0426 -3.4155 36 1 5.8749 -0.0472 -3.6681 37 1 5.6712 1.7103 -3.8633 38 1 6.4119 0.1731 0.0567 39 1 6.4909 -0.9347 -1.3338 40 1 7.7263 0.3313 -1.1330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891696677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -34.109350 kcal Electronic energy + Delta-G solvation = -23128.175431 eV Core-core repulsion = 19665.568824 eV Total energy + Delta-G solvation = -3462.606607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.82280 -40.47147 -38.37433 -37.37886 -33.11707 -32.80041 -30.50064 -30.43268 -27.84953 -27.05078 -26.41524 -25.06788 -23.30530 -22.35528 -21.81986 -18.85830 -17.77053 -17.68126 -17.18672 -16.79083 -16.30941 -15.41322 -15.11577 -14.80075 -14.61409 -14.39289 -13.83257 -13.67296 -13.49891 -13.14819 -12.80917 -12.60835 -12.26183 -12.12946 -11.91631 -11.64233 -11.45816 -11.26764 -11.12941 -10.92165 -10.80402 -10.52969 -10.40114 -10.21139 -9.78802 -9.67864 -9.39316 -9.14827 -8.43426 -8.36083 -7.26222 -6.03901 -4.05396 1.02392 1.20863 2.90881 3.29107 3.37151 3.40665 3.65429 4.16308 4.35872 4.40822 4.77856 4.92606 5.00681 5.13765 5.18923 5.23674 5.31567 5.48256 5.56652 5.61194 5.75211 5.83012 5.94757 6.01584 6.16207 6.22905 6.35666 6.42558 6.47400 6.50283 6.54845 6.82827 6.87534 7.13731 7.27429 7.37174 7.71386 7.80132 8.08079 8.14670 8.52893 9.02909 9.58934 11.06435 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.005096 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.110163 B = 5493.166368 C = 6354.705256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.304 6.304 3 C 0.288 3.712 4 N -0.524 5.524 5 C 0.123 3.877 6 C -0.163 4.163 7 C -0.015 4.015 8 C 0.092 3.908 9 N -0.521 5.521 10 C 0.189 3.811 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.062 3.938 20 C -0.139 4.139 21 C -0.179 4.179 22 C 0.031 3.969 23 F -0.117 7.117 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.150 0.850 29 H 0.045 0.955 30 H 0.104 0.896 31 H -0.001 1.001 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.826 -5.204 3.078 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.212 6.212 3 C 0.108 3.892 4 N -0.248 5.248 5 C -0.032 4.032 6 C -0.184 4.184 7 C -0.024 4.024 8 C -0.035 4.035 9 N -0.245 5.245 10 C 0.065 3.935 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.047 4.047 20 C -0.196 4.196 21 C -0.238 4.238 22 C 0.008 3.992 23 F -0.096 7.096 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.182 0.818 28 H 0.168 0.832 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.017 0.983 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.643 -5.269 2.752 17.673 hybrid contribution 1.466 0.409 0.557 1.621 sum -15.177 -4.860 3.310 16.276 Atomic orbital electron populations 1.22845 0.77218 1.02837 1.02420 1.86293 1.22891 1.23884 1.88088 1.19789 0.87831 0.85827 0.95754 1.67344 1.39694 0.98431 1.19371 1.22422 0.92989 0.93442 0.94333 1.21947 0.93738 0.99713 1.03003 1.20589 0.98683 0.90191 0.92946 1.21017 0.86234 1.03629 0.92652 1.62473 1.22056 1.20660 1.19360 1.19820 0.80372 0.96355 0.96973 1.21224 0.92036 0.91662 1.49704 0.91841 1.24984 0.95935 0.98115 0.95523 1.69969 0.97973 1.34753 1.51017 0.86486 0.78149 0.85524 0.77512 1.19651 1.21178 1.21087 1.21940 0.99260 0.88520 0.94974 1.21805 1.02196 1.00144 0.95471 1.22437 1.01386 0.99399 1.00564 1.17513 0.86272 0.83776 1.11625 1.91498 1.75745 1.48475 1.93874 0.92336 0.92251 0.88693 0.81793 0.83203 0.93746 0.87822 0.98282 0.94519 0.93005 0.90793 0.92152 0.93604 0.92283 0.92850 0.93340 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.30 -4.34 10.35 -18.90 -0.20 -4.54 16 3 C 0.29 4.41 7.50 -17.07 -0.13 4.29 16 4 N -0.52 -7.30 9.22 -13.28 -0.12 -7.43 16 5 C 0.12 1.50 11.17 -17.56 -0.20 1.31 16 6 C -0.16 -2.25 9.77 -39.44 -0.39 -2.63 16 7 C -0.02 -0.25 5.19 -104.29 -0.54 -0.79 16 8 C 0.09 1.74 4.75 -4.98 -0.02 1.72 16 9 N -0.52 -10.94 4.41 -229.52 -1.01 -11.96 16 10 C 0.19 4.73 3.56 -4.97 -0.02 4.71 16 11 C -0.51 -13.66 8.40 -34.44 -0.29 -13.95 16 12 H 0.06 1.68 7.70 -52.49 -0.40 1.28 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.06 1.17 2.37 -67.71 -0.16 1.01 16 20 C -0.14 -2.50 8.91 37.16 0.33 -2.16 16 21 C -0.18 -3.26 7.54 37.16 0.28 -2.98 16 22 C 0.03 0.51 5.97 -39.14 -0.23 0.27 16 23 F -0.12 -2.02 12.10 2.25 0.03 -2.00 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.04 0.85 6.16 -51.92 -0.32 0.53 16 30 H 0.10 2.01 7.09 -51.93 -0.37 1.65 16 31 H 0.00 -0.02 7.13 -51.93 -0.37 -0.39 16 32 H 0.04 0.98 5.95 -51.93 -0.31 0.67 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 34 H 0.07 1.38 4.36 -51.93 -0.23 1.15 16 35 H 0.06 1.16 6.55 -51.93 -0.34 0.82 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.97 5.39 -51.93 -0.28 0.69 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.22 6.72 -51.93 -0.35 0.88 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -30.07 321.43 -6.64 -36.71 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.48 Total: -0.02 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.41 Total: -6.32 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.40 Total: -44.69 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -2.00 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.07 -6.64 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891696677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.602 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds