Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35733 * 116.99746 * 2 1 4 4 N 1.32214 * 119.69691 * 359.97041 * 3 2 1 5 5 C 1.31966 * 121.67356 * 180.02562 * 4 3 2 6 6 C 1.38061 * 120.87570 * 359.74866 * 5 4 3 7 7 C 1.38800 * 119.30830 * 0.50551 * 6 5 4 8 8 C 1.50695 * 120.76653 * 179.78057 * 7 6 5 9 9 N 1.46902 * 109.46785 * 259.71470 * 8 7 6 10 10 C 1.46900 * 111.00036 * 170.00040 * 9 8 7 11 11 C 1.50702 * 109.47220 * 288.07426 * 10 9 8 12 12 H 1.07995 * 120.00320 * 355.66669 * 11 10 9 13 13 C 1.37879 * 120.00085 * 175.67600 * 11 10 9 14 14 N 1.31519 * 119.99663 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47315 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47456 * 119.99479 * 15 13 11 18 18 H 1.48500 * 109.47076 * 239.99595 * 15 13 11 19 19 C 1.46898 * 111.00390 * 293.96018 * 9 8 7 20 20 C 1.52998 * 109.47150 * 172.40112 * 19 9 8 21 21 C 1.53006 * 109.46663 * 292.39768 * 19 9 8 22 22 C 1.38574 * 118.46079 * 359.50183 * 7 6 5 23 23 F 1.35098 * 120.46244 * 180.22740 * 22 7 6 24 24 H 1.08996 * 109.47749 * 300.00275 * 1 2 3 25 25 H 1.08995 * 109.47164 * 60.00537 * 1 2 3 26 26 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.56483 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.34821 * 180.28930 * 6 5 4 29 29 H 1.09007 * 109.47131 * 139.72357 * 8 7 6 30 30 H 1.08994 * 109.47320 * 19.71785 * 8 7 6 31 31 H 1.09003 * 109.47177 * 48.06940 * 10 9 8 32 32 H 1.08997 * 109.47461 * 168.06602 * 10 9 8 33 33 H 0.97002 * 119.99482 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47378 * 52.39965 * 19 9 8 35 35 H 1.09000 * 109.47671 * 67.61973 * 20 19 9 36 36 H 1.08995 * 109.47268 * 187.61993 * 20 19 9 37 37 H 1.09002 * 109.47016 * 307.62397 * 20 19 9 38 38 H 1.08992 * 109.46988 * 60.00238 * 21 19 9 39 39 H 1.08998 * 109.46623 * 179.97438 * 21 19 9 40 40 H 1.08998 * 109.47067 * 299.99807 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3192 2.3144 -0.0006 5 6 1.8773 3.5102 -0.0011 6 6 3.2507 3.6511 0.0041 7 6 4.0501 2.5164 -0.0007 8 6 5.5526 2.6319 -0.0001 9 7 6.0598 2.4287 -1.3638 10 6 7.4870 2.7655 -1.4503 11 6 7.6567 4.2603 -1.3606 12 1 6.7882 4.9010 -1.3208 13 6 8.9208 4.8100 -1.3294 14 7 9.9785 4.0297 -1.3775 15 14 9.1312 6.6627 -1.2190 16 1 7.7957 7.3111 -1.1790 17 1 9.8840 7.0028 0.0150 18 1 9.8809 7.1474 -2.4056 19 6 5.8151 1.0529 -1.8169 20 6 6.1814 0.9309 -3.2974 21 6 6.6728 0.0862 -0.9979 22 6 3.4345 1.2749 0.0000 23 9 4.1735 0.1439 0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2515 4.3904 -0.0012 28 1 3.6985 4.6339 0.0084 29 1 5.9750 1.8752 0.6611 30 1 5.8407 3.6228 0.3508 31 1 8.0232 2.2892 -0.6295 32 1 7.8872 2.4107 -2.4000 33 1 10.8678 4.4165 -1.3560 34 1 4.7617 0.8078 -1.6819 35 1 7.2592 1.0426 -3.4155 36 1 5.8749 -0.0472 -3.6681 37 1 5.6712 1.7103 -3.8633 38 1 6.4119 0.1731 0.0567 39 1 6.4909 -0.9347 -1.3338 40 1 7.7263 0.3313 -1.1330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891696677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = -54.862551 kcal Electronic energy + Delta-G solvation = -23129.075357 eV Core-core repulsion = 19665.568824 eV Total energy + Delta-G solvation = -3463.506533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08070 -41.57128 -39.72572 -38.68870 -34.87533 -34.37590 -32.10852 -31.50819 -29.39469 -28.16533 -28.00633 -26.62616 -24.56228 -24.09182 -23.05325 -20.39431 -19.03870 -18.80550 -18.57602 -18.39332 -17.66921 -16.77347 -16.57330 -16.22163 -16.01342 -15.65152 -15.35180 -15.08478 -14.98792 -14.28295 -14.13286 -14.04543 -13.88097 -13.70848 -13.19843 -13.04382 -12.92262 -12.74964 -12.52413 -12.48770 -12.24270 -12.14556 -12.08178 -12.05817 -11.33345 -11.24169 -10.87448 -10.63286 -10.52272 -9.45233 -9.00567 -8.14672 -6.24244 -0.10358 0.05737 1.44257 1.45618 1.58241 1.90479 2.43776 2.54875 3.08085 3.18146 3.26162 3.36727 3.59458 3.82983 4.00761 4.03090 4.23965 4.42762 4.44698 4.45793 4.50436 4.55746 4.66740 4.73196 4.76134 4.86696 4.90102 4.93928 5.01481 5.16479 5.21013 5.34059 5.35068 5.36065 5.43468 5.71984 6.11147 6.12048 6.32224 6.63042 6.64028 6.92302 7.45283 8.95923 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.005096 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.110163 B = 5493.166368 C = 6354.705256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.285 3.715 4 N -0.523 5.523 5 C 0.140 3.860 6 C -0.164 4.164 7 C -0.028 4.028 8 C 0.098 3.902 9 N -0.525 5.525 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.258 1.258 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.061 3.939 20 C -0.134 4.134 21 C -0.169 4.169 22 C 0.008 3.992 23 F -0.129 7.129 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.209 0.791 28 H 0.165 0.835 29 H 0.034 0.966 30 H 0.093 0.907 31 H -0.031 1.031 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 -4.088 3.113 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.106 3.894 4 N -0.247 5.247 5 C -0.015 4.015 6 C -0.185 4.185 7 C -0.037 4.037 8 C -0.030 4.030 9 N -0.248 5.248 10 C 0.083 3.917 11 C -0.557 4.557 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.577 5.577 15 Si 0.791 3.209 16 H -0.181 1.181 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.048 4.048 20 C -0.192 4.192 21 C -0.228 4.228 22 C -0.014 4.014 23 F -0.107 7.107 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.226 0.774 28 H 0.182 0.818 29 H 0.052 0.948 30 H 0.112 0.888 31 H -0.014 1.014 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.166 -4.174 2.791 19.813 hybrid contribution 2.125 0.015 0.561 2.198 sum -17.041 -4.159 3.352 17.859 Atomic orbital electron populations 1.23141 0.75004 1.04870 1.02766 1.86276 1.25120 1.23580 1.87809 1.19846 0.87514 0.86631 0.95450 1.67494 1.39410 0.98596 1.19221 1.23108 0.92754 0.94172 0.91455 1.22174 0.94409 0.99414 1.02480 1.20393 0.97045 0.91419 0.94870 1.20871 0.88389 1.02582 0.91130 1.62394 1.19222 1.22265 1.20965 1.19418 0.82482 0.95393 0.94440 1.21540 0.92297 0.92593 1.49234 0.91465 1.25873 0.95579 1.03033 0.95063 1.70107 0.98494 1.36947 1.52117 0.85384 0.78588 0.79584 0.77368 1.18133 1.20792 1.20969 1.22030 0.99806 0.87473 0.95475 1.21774 1.00779 1.01692 0.94932 1.22328 0.99592 1.00504 1.00392 1.17661 0.87029 0.83412 1.13332 1.91451 1.76128 1.49020 1.94139 0.91808 0.91973 0.85958 0.77420 0.81780 0.94830 0.88848 1.01354 0.96879 0.92927 0.89789 0.94176 0.90724 0.92650 0.93198 0.91150 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.81 16 2 O -0.32 -8.63 10.35 -90.56 -0.94 -9.57 16 3 C 0.29 8.28 7.50 84.84 0.64 8.92 16 4 N -0.52 -13.11 9.22 -308.77 -2.85 -15.96 16 5 C 0.14 2.94 11.17 84.63 0.95 3.89 16 6 C -0.16 -4.16 9.77 22.36 0.22 -3.94 16 7 C -0.03 -0.91 5.19 -19.65 -0.10 -1.01 16 8 C 0.10 3.76 4.75 85.55 0.41 4.17 16 9 N -0.52 -22.52 4.41 -880.07 -3.88 -26.40 16 10 C 0.21 10.84 3.56 85.56 0.30 11.14 16 11 C -0.52 -28.35 8.40 25.60 0.21 -28.13 16 12 H 0.07 3.55 7.70 -2.91 -0.02 3.53 16 13 C 0.00 0.12 5.46 84.65 0.46 0.59 16 14 N -0.94 -55.67 13.29 21.45 0.28 -55.38 16 15 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 16 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.06 2.31 2.37 44.92 0.11 2.42 16 20 C -0.13 -4.85 8.91 71.98 0.64 -4.20 16 21 C -0.17 -6.33 7.54 71.98 0.54 -5.79 16 22 C 0.01 0.27 5.97 22.55 0.13 0.40 16 23 F -0.13 -4.44 12.10 44.97 0.54 -3.89 16 24 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 25 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 26 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.03 1.35 6.16 -2.38 -0.01 1.33 16 30 H 0.09 3.71 7.09 -2.39 -0.02 3.69 16 31 H -0.03 -1.79 7.13 -2.39 -0.02 -1.81 16 32 H 0.01 0.74 5.95 -2.39 -0.01 0.73 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.08 3.11 4.36 -2.39 -0.01 3.10 16 35 H 0.04 1.59 6.55 -2.39 -0.02 1.57 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.87 5.39 -2.39 -0.01 1.86 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.55 6.72 -2.39 -0.02 1.53 16 Total: -1.00 -65.87 321.43 1.93 -63.95 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.05 Total: 11.83 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 5.69 Total: -9.75 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -6.44 Total: -97.74 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.94 Total: -9.57 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.54 Total: -3.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.87 1.93 -63.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891696677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.085 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds