Wall clock time and date at job start Tue Mar 31 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.45666 * 2 1 4 4 C 1.54476 * 110.51364 * 237.24367 * 2 1 3 5 5 O 1.44426 * 104.80313 * 265.33934 * 4 2 1 6 6 C 1.44429 * 105.27504 * 319.48711 * 5 4 2 7 7 H 1.09001 * 110.46474 * 281.63383 * 6 5 4 8 8 C 1.52998 * 110.37328 * 159.34578 * 6 5 4 9 9 C 1.50699 * 109.47357 * 69.62227 * 8 6 5 10 10 O 1.20828 * 119.99973 * 359.97438 * 9 8 6 11 11 O 1.34232 * 120.00141 * 180.02562 * 9 8 6 12 12 C 1.45199 * 116.99697 * 177.69712 * 11 9 8 13 13 C 1.50703 * 112.84592 * 65.19332 * 12 11 9 14 14 H 1.08001 * 119.99605 * 242.59924 * 13 12 11 15 15 C 1.37882 * 120.00427 * 62.60893 * 13 12 11 16 16 N 1.31516 * 119.99366 * 353.75077 * 15 13 12 17 17 Si 1.86795 * 120.00240 * 173.75482 * 15 13 12 18 18 H 1.48493 * 109.47148 * 59.99485 * 17 15 13 19 19 H 1.48491 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47064 * 299.99651 * 17 15 13 21 21 C 1.53780 * 113.61912 * 293.99359 * 12 11 9 22 22 C 1.53953 * 87.01850 * 220.04867 * 21 12 11 23 23 C 1.53778 * 113.61170 * 196.38164 * 12 11 9 24 24 C 1.54479 * 104.80368 * 40.51222 * 6 5 4 25 25 H 1.08998 * 109.47068 * 297.39950 * 1 2 3 26 26 H 1.09003 * 109.46770 * 57.39734 * 1 2 3 27 27 H 1.09000 * 109.46862 * 177.39591 * 1 2 3 28 28 H 1.09002 * 109.47122 * 182.60066 * 3 2 1 29 29 H 1.08997 * 109.47256 * 302.60038 * 3 2 1 30 30 H 1.09001 * 109.47501 * 62.59991 * 3 2 1 31 31 H 1.08996 * 110.37110 * 24.16570 * 4 2 1 32 32 H 1.08997 * 110.37169 * 146.50576 * 4 2 1 33 33 H 1.09000 * 109.46751 * 189.61765 * 8 6 5 34 34 H 1.08999 * 109.47255 * 309.61512 * 8 6 5 35 35 H 0.97001 * 119.99179 * 185.02137 * 16 15 13 36 36 H 1.08996 * 113.61197 * 334.57218 * 21 12 11 37 37 H 1.08998 * 113.61274 * 105.47327 * 21 12 11 38 38 H 1.08995 * 113.53971 * 270.80742 * 22 21 12 39 39 H 1.09000 * 113.66901 * 139.92970 * 22 21 12 40 40 H 1.09000 * 113.61788 * 254.52972 * 23 12 11 41 41 H 1.08998 * 113.61550 * 25.35400 * 23 12 11 42 42 H 1.08997 * 110.51117 * 94.66442 * 24 6 5 43 43 H 1.09001 * 110.51150 * 217.37814 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0714 -0.7828 -1.2167 5 8 2.3069 -2.1187 -0.7209 6 6 2.8756 -1.9415 0.5948 7 1 3.9304 -1.6764 0.5215 8 6 2.7040 -3.2150 1.4252 9 6 3.5911 -4.2997 0.8708 10 8 4.2888 -4.0771 -0.0903 11 8 3.6055 -5.5134 1.4440 12 6 4.4449 -6.5242 0.8260 13 6 5.9128 -6.1912 0.9004 14 1 6.4783 -6.0379 -0.0069 15 6 6.5339 -6.0824 2.1266 16 7 5.8235 -6.1470 3.2315 17 14 8.3842 -5.8432 2.2185 18 1 8.7567 -4.5895 1.5151 19 1 8.8019 -5.7551 3.6407 20 1 9.0648 -6.9942 1.5725 21 6 3.9776 -6.9382 -0.5793 22 6 4.3377 -8.3824 -0.1860 23 6 4.1149 -7.9575 1.2751 24 6 2.0713 -0.7798 1.2192 25 1 -0.3633 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8658 27 1 -0.3633 -1.0266 -0.0467 28 1 3.1536 1.4151 -0.0466 29 1 1.6730 1.9674 -0.8657 30 1 1.7486 1.9392 0.9124 31 1 1.3312 -0.8001 -2.0166 32 1 3.0024 -0.3393 -1.5696 33 1 2.9799 -3.0136 2.4603 34 1 1.6641 -3.5389 1.3829 35 1 6.2484 -5.9980 4.0906 36 1 2.9118 -6.7844 -0.7479 37 1 4.5964 -6.5359 -1.3814 38 1 5.3701 -8.6501 -0.4104 39 1 3.6209 -9.1238 -0.5392 40 1 4.8445 -8.3769 1.9678 41 1 3.0872 -8.0826 1.6158 42 1 1.2489 -1.1652 1.8218 43 1 2.7219 -0.1447 1.8206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892982614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:50 Heat of formation + Delta-G solvation = -123.725923 kcal Electronic energy + Delta-G solvation = -23438.740900 eV Core-core repulsion = 20063.415780 eV Total energy + Delta-G solvation = -3375.325119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95926 -38.98341 -36.95448 -34.53427 -33.96205 -32.24886 -31.91998 -27.57818 -27.42392 -26.08077 -25.71380 -24.48628 -23.08431 -21.51595 -19.70728 -19.21140 -18.48138 -16.88176 -16.23422 -15.47572 -15.43481 -15.05656 -14.85559 -14.72815 -14.18998 -14.04340 -13.76841 -13.52131 -13.09009 -13.02405 -12.52863 -12.14919 -11.88857 -11.65657 -11.57712 -11.46460 -11.27914 -11.00796 -10.96252 -10.85069 -10.79935 -10.68659 -10.50679 -10.31783 -10.23930 -9.80643 -9.73565 -9.41932 -9.13281 -8.71246 -8.46895 -8.42312 -6.06319 -4.17474 3.30096 3.33659 3.38450 3.67632 4.01409 4.14483 4.38662 4.43178 4.65882 4.82830 5.11433 5.19198 5.26797 5.28823 5.44720 5.48334 5.55420 5.64483 5.68692 5.76752 5.78396 5.81052 5.83018 5.86887 5.97257 6.02151 6.04036 6.09808 6.19377 6.30476 6.32540 6.53156 6.61140 6.71828 6.99844 7.09367 7.17026 7.35226 7.62679 7.84425 8.06013 8.46992 8.86386 9.37275 9.53323 10.98212 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.004811 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.438423 B = 5818.461630 C = 6479.325182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.052 3.948 5 O -0.356 6.356 6 C 0.092 3.908 7 H 0.077 0.923 8 C -0.114 4.114 9 C 0.461 3.539 10 O -0.504 6.504 11 O -0.348 6.348 12 C 0.242 3.758 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.075 3.925 16 N -0.864 5.864 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.108 4.108 24 C -0.144 4.144 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.262 0.738 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 10.559 -2.917 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.025 4.025 5 O -0.274 6.274 6 C 0.034 3.966 7 H 0.095 0.905 8 C -0.152 4.152 9 C 0.302 3.698 10 O -0.392 6.392 11 O -0.264 6.264 12 C 0.208 3.792 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.130 4.130 16 N -0.500 5.500 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.195 4.195 22 C -0.170 4.170 23 C -0.146 4.146 24 C -0.181 4.181 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.345 10.296 -3.100 14.246 hybrid contribution 1.104 0.468 0.249 1.225 sum -8.240 10.764 -2.851 13.852 Atomic orbital electron populations 1.21833 0.93579 1.02249 1.01558 1.21958 0.96556 0.95908 0.95785 1.21838 1.01062 0.94729 1.01843 1.23481 0.99669 0.83592 0.95754 1.89244 1.82693 1.24668 1.30816 1.22731 0.97713 0.93197 0.82916 0.90481 1.21427 1.00932 0.92284 1.00521 1.22664 0.81201 0.84008 0.81885 1.90564 1.39985 1.82033 1.26658 1.86461 1.63549 1.20109 1.56265 1.21113 0.89055 0.82378 0.86665 1.20916 0.91494 1.49601 0.92862 0.91569 1.25065 0.98279 0.94025 0.95665 1.70040 1.35700 1.46599 0.97671 0.86656 0.85452 0.79049 0.76948 1.20105 1.21161 1.19869 1.23533 0.99223 0.96441 1.00347 1.22572 1.00702 0.95699 0.97995 1.22896 0.99839 0.96426 0.95460 1.23163 1.00435 0.96966 0.97563 0.92549 0.92666 0.92014 0.92294 0.92507 0.92358 0.89517 0.92427 0.87455 0.88451 0.92798 0.92276 0.91898 0.90315 0.93079 0.90849 0.92342 0.90287 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.29 37.16 0.31 -0.94 16 2 C -0.10 -1.08 1.05 -152.94 -0.16 -1.24 16 3 C -0.14 -1.21 8.31 37.15 0.31 -0.90 16 4 C 0.05 0.68 6.74 37.93 0.26 0.93 16 5 O -0.36 -6.21 10.92 -41.85 -0.46 -6.67 16 6 C 0.09 1.49 2.74 -25.96 -0.07 1.42 16 7 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 8 C -0.11 -2.02 5.44 -27.88 -0.15 -2.18 16 9 C 0.46 11.02 7.45 36.00 0.27 11.29 16 10 O -0.50 -13.36 14.06 -22.26 -0.31 -13.67 16 11 O -0.35 -9.06 9.76 -39.26 -0.38 -9.44 16 12 C 0.24 6.30 0.47 -90.96 -0.04 6.26 16 13 C -0.51 -14.45 7.08 -34.44 -0.24 -14.70 16 14 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 15 C 0.08 2.09 5.29 -17.82 -0.09 2.00 16 16 N -0.86 -24.53 12.78 55.43 0.71 -23.82 16 17 Si 0.89 21.53 29.55 -169.99 -5.02 16.51 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.16 -3.66 6.56 -25.83 -0.17 -3.83 16 22 C -0.13 -2.76 7.81 -25.83 -0.20 -2.96 16 23 C -0.11 -2.56 7.28 -25.92 -0.19 -2.74 16 24 C -0.14 -1.70 5.92 -25.16 -0.15 -1.85 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 32 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 33 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.51 8.08 -51.93 -0.42 1.09 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.84 7.97 -51.93 -0.41 1.42 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.08 0.87 7.46 -51.93 -0.39 0.48 16 43 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -32.11 347.47 -8.03 -40.14 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.46 Total: 1.17 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.33 Total: -9.45 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.82 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.15 Total: -29.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.11 -8.03 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892982614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.590 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds