Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.45585 * 2 1 4 4 C 1.54480 * 110.50904 * 237.39756 * 2 1 3 5 5 O 1.44647 * 104.69472 * 217.47158 * 4 2 1 6 6 C 1.44427 * 105.36952 * 40.34967 * 5 4 2 7 7 H 1.08995 * 110.46930 * 78.43762 * 6 5 4 8 8 C 1.52998 * 110.37385 * 200.73450 * 6 5 4 9 9 C 1.50696 * 109.46993 * 290.37533 * 8 6 5 10 10 O 1.20824 * 120.00471 * 0.02562 * 9 8 6 11 11 O 1.34229 * 120.00080 * 179.97438 * 9 8 6 12 12 C 1.45203 * 117.00206 * 175.19421 * 11 9 8 13 13 C 1.50698 * 112.85136 * 54.50250 * 12 11 9 14 14 H 1.08001 * 119.99953 * 244.95877 * 13 12 11 15 15 C 1.37875 * 119.99636 * 64.95893 * 13 12 11 16 16 N 1.31511 * 120.00362 * 354.95483 * 15 13 12 17 17 Si 1.86800 * 119.99669 * 174.96046 * 15 13 12 18 18 H 1.48500 * 109.47291 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47357 * 119.99977 * 17 15 13 20 20 H 1.48501 * 109.47164 * 239.99646 * 17 15 13 21 21 C 1.53784 * 113.60840 * 283.20009 * 12 11 9 22 22 C 1.53783 * 87.07883 * 220.01774 * 21 12 11 23 23 C 1.53775 * 113.61274 * 185.70357 * 12 11 9 24 24 C 1.54480 * 104.80060 * 319.56240 * 6 5 4 25 25 H 1.08998 * 109.47366 * 59.29935 * 1 2 3 26 26 H 1.09008 * 109.47093 * 179.30095 * 1 2 3 27 27 H 1.09005 * 109.47196 * 299.29615 * 1 2 3 28 28 H 1.09000 * 109.47161 * 60.70177 * 3 2 1 29 29 H 1.08997 * 109.47174 * 180.70642 * 3 2 1 30 30 H 1.08996 * 109.46924 * 300.69797 * 3 2 1 31 31 H 1.09000 * 110.37184 * 336.20467 * 4 2 1 32 32 H 1.08997 * 110.37758 * 98.54328 * 4 2 1 33 33 H 1.09000 * 109.46922 * 50.37954 * 8 6 5 34 34 H 1.08997 * 109.47033 * 170.37593 * 8 6 5 35 35 H 0.96997 * 120.00331 * 185.00326 * 16 15 13 36 36 H 1.09001 * 113.61320 * 334.56306 * 21 12 11 37 37 H 1.08995 * 113.61644 * 105.47452 * 21 12 11 38 38 H 1.09000 * 113.61545 * 270.88463 * 22 21 12 39 39 H 1.09003 * 113.69155 * 139.99096 * 22 21 12 40 40 H 1.09006 * 113.61553 * 254.52546 * 23 12 11 41 41 H 1.09004 * 113.62092 * 25.34612 * 23 12 11 42 42 H 1.09003 * 110.51425 * 265.33781 * 24 6 5 43 43 H 1.08998 * 110.51506 * 142.62286 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0712 -0.7796 -1.2189 5 8 3.2398 -1.4722 -0.7220 6 6 2.8757 -1.9415 0.5945 7 1 2.2569 -2.8358 0.5227 8 6 4.1294 -2.2274 1.4236 9 6 4.8326 -3.4395 0.8691 10 8 4.3781 -4.0152 -0.0909 11 8 5.9646 -3.8789 1.4412 12 6 6.5295 -5.1121 0.9230 13 6 6.7614 -5.0695 -0.5654 14 1 6.2053 -5.7266 -1.2176 15 6 7.6834 -4.1915 -1.0945 16 7 8.2882 -3.3232 -0.3136 17 14 8.0736 -4.2353 -2.9208 18 1 7.2651 -5.2957 -3.5745 19 1 7.7490 -2.9196 -3.5281 20 1 9.5173 -4.5258 -3.1117 21 6 5.7911 -6.3749 1.3974 22 6 7.1732 -7.0339 1.5404 23 6 7.7430 -5.6169 1.7213 24 6 2.0714 -0.7798 1.2190 25 1 -0.3634 0.5247 -0.8836 26 1 -0.3634 -1.0277 -0.0125 27 1 -0.3634 0.5029 0.8963 28 1 1.7205 1.9497 0.8962 29 1 3.1544 1.4148 -0.0127 30 1 1.7001 1.9572 -0.8836 31 1 1.3284 -1.4949 -1.5721 32 1 2.3463 -0.0913 -2.0180 33 1 4.7979 -1.3676 1.3797 34 1 3.8453 -2.4142 2.4591 35 1 8.8818 -2.6582 -0.6959 36 1 5.2691 -6.2452 2.3455 37 1 5.1675 -6.8308 0.6286 38 1 7.5165 -7.5298 0.6325 39 1 7.2703 -7.6601 2.4273 40 1 8.6950 -5.4610 1.2139 41 1 7.7553 -5.2789 2.7576 42 1 2.7220 -0.1447 1.8204 43 1 1.2491 -1.1653 1.8217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892982615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -121.484113 kcal Electronic energy + Delta-G solvation = -23554.445135 eV Core-core repulsion = 20179.217227 eV Total energy + Delta-G solvation = -3375.227907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.89588 -38.93813 -36.96381 -34.48444 -33.93158 -32.18086 -31.87173 -27.54569 -27.40564 -26.02017 -25.64941 -24.49639 -23.10392 -21.48696 -19.65891 -19.17516 -18.47587 -16.87242 -16.13552 -15.45124 -15.39643 -15.00153 -14.84226 -14.66947 -14.15523 -13.98153 -13.79760 -13.45511 -13.12054 -12.92252 -12.50397 -12.14195 -11.89456 -11.61396 -11.54399 -11.43702 -11.23136 -11.00353 -10.92184 -10.79277 -10.73364 -10.68180 -10.47744 -10.26283 -10.16067 -9.83165 -9.70174 -9.35389 -9.09522 -8.69336 -8.41549 -8.36900 -5.99614 -4.07306 3.33786 3.42106 3.48100 3.71350 4.07196 4.16593 4.45952 4.47510 4.69359 4.86856 5.14435 5.22602 5.30398 5.34900 5.47672 5.48462 5.58564 5.63579 5.73546 5.76903 5.80753 5.82609 5.87020 5.90237 5.93874 6.00662 6.04143 6.11858 6.24421 6.32615 6.35121 6.51793 6.59515 6.68758 6.93311 7.15826 7.17641 7.39448 7.64258 7.91429 8.06353 8.54500 8.93702 9.42469 9.60526 11.05607 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.005283 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.490798 B = 5298.958499 C = 6108.415507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.051 3.949 5 O -0.349 6.349 6 C 0.093 3.907 7 H 0.074 0.926 8 C -0.116 4.116 9 C 0.461 3.539 10 O -0.494 6.494 11 O -0.354 6.354 12 C 0.240 3.760 13 C -0.500 4.500 14 H 0.066 0.934 15 C 0.075 3.925 16 N -0.868 5.868 17 Si 0.892 3.108 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.162 4.162 22 C -0.130 4.130 23 C -0.108 4.108 24 C -0.143 4.143 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 6.319 4.696 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.026 4.026 5 O -0.268 6.268 6 C 0.035 3.965 7 H 0.092 0.908 8 C -0.154 4.154 9 C 0.301 3.699 10 O -0.381 6.381 11 O -0.271 6.271 12 C 0.206 3.794 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.130 4.130 16 N -0.505 5.505 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.199 4.199 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.181 4.181 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.702 6.174 4.304 13.913 hybrid contribution 0.009 0.219 -0.978 1.002 sum -11.693 6.393 3.326 13.736 Atomic orbital electron populations 1.21835 0.93787 1.01953 1.01818 1.21959 0.95948 0.96507 0.95784 1.21835 1.01635 0.94322 1.01489 1.23532 0.88674 0.94625 0.95786 1.89369 1.33847 1.73135 1.30425 1.22692 0.94413 0.96082 0.83325 0.90812 1.21450 0.96463 0.97797 0.99667 1.22596 0.80320 0.84740 0.82200 1.90577 1.65351 1.57328 1.24820 1.86410 1.36789 1.44186 1.59689 1.21155 0.88818 0.75951 0.93501 1.20920 1.20444 1.22499 0.89875 0.91547 1.25006 0.94922 0.95143 0.97941 1.70026 1.29139 1.16840 1.34532 0.86517 0.77745 0.78237 0.85495 1.19560 1.20926 1.20973 1.23557 0.96638 1.00072 0.99676 1.22508 0.97507 0.96445 1.00330 1.22889 0.99882 0.93304 0.98479 1.23164 0.99998 0.97351 0.97582 0.92496 0.92370 0.92422 0.92603 0.91897 0.92655 0.92475 0.89475 0.88058 0.88050 0.92979 0.92205 0.92130 0.90277 0.93081 0.90620 0.92389 0.90286 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.29 37.15 0.31 -0.91 16 2 C -0.10 -1.14 1.05 -152.94 -0.16 -1.30 16 3 C -0.14 -1.38 8.28 37.16 0.31 -1.07 16 4 C 0.05 0.72 6.76 37.93 0.26 0.97 16 5 O -0.35 -6.70 10.92 -41.85 -0.46 -7.15 16 6 C 0.09 1.52 2.75 -25.96 -0.07 1.44 16 7 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 8 C -0.12 -2.07 5.44 -27.89 -0.15 -2.22 16 9 C 0.46 11.08 7.54 36.00 0.27 11.35 16 10 O -0.49 -13.27 13.93 -22.26 -0.31 -13.58 16 11 O -0.35 -9.19 9.93 -39.26 -0.39 -9.58 16 12 C 0.24 6.22 0.50 -90.96 -0.05 6.17 16 13 C -0.50 -14.33 6.29 -34.44 -0.22 -14.55 16 14 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.07 2.14 5.24 -17.82 -0.09 2.05 16 16 N -0.87 -25.39 12.54 55.43 0.69 -24.70 16 17 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 18 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.16 -3.62 7.28 -25.92 -0.19 -3.81 16 22 C -0.13 -2.68 7.81 -25.91 -0.20 -2.88 16 23 C -0.11 -2.53 7.19 -25.92 -0.19 -2.72 16 24 C -0.14 -1.70 5.92 -25.16 -0.15 -1.85 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.52 8.12 -51.92 -0.42 0.10 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.09 1.13 7.87 -51.93 -0.41 0.72 16 33 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.92 7.63 -51.93 -0.40 1.52 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 0.88 7.46 -51.93 -0.39 0.50 16 43 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -33.19 346.87 -8.03 -41.22 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.45 Total: 0.37 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.32 Total: -9.31 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.69 Total: -24.70 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.16 Total: -30.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.19 -8.03 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892982615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.268 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds