Wall clock time and date at job start Tue Mar 31 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00273 * 2 1 4 4 C 1.50689 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.35351 * 126.75183 * 359.97438 * 4 3 2 6 6 N 1.35317 * 106.17806 * 179.74051 * 5 4 3 7 7 C 1.46493 * 125.86822 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47404 * 155.00227 * 7 6 5 9 9 C 1.52997 * 109.47439 * 35.00177 * 7 6 5 10 10 C 1.50704 * 109.47394 * 274.99796 * 7 6 5 11 11 O 1.21278 * 119.99794 * 13.92629 * 10 7 6 12 12 N 1.34777 * 120.00250 * 193.92182 * 10 7 6 13 13 C 1.46498 * 120.00020 * 3.70656 * 12 10 7 14 14 C 1.46505 * 119.99709 * 183.69896 * 12 10 7 15 15 C 1.50700 * 109.46614 * 90.00638 * 14 12 10 16 16 H 1.07992 * 120.00252 * 359.97438 * 15 14 12 17 17 C 1.37884 * 119.99672 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99653 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47269 * 90.00486 * 19 17 15 21 21 H 1.48503 * 109.46840 * 209.99634 * 19 17 15 22 22 H 1.48494 * 109.47373 * 330.00017 * 19 17 15 23 23 N 1.28713 * 108.26126 * 0.02562 * 6 5 4 24 24 N 1.28637 * 110.18119 * 359.97438 * 23 6 5 25 25 H 1.09001 * 109.47001 * 60.00070 * 1 2 3 26 26 H 1.08998 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47172 * 299.99996 * 1 2 3 28 28 H 1.08999 * 109.47123 * 60.00065 * 3 2 1 29 29 H 1.09004 * 109.46872 * 300.00543 * 3 2 1 30 30 H 1.08003 * 126.90944 * 359.70227 * 5 4 3 31 31 H 1.09004 * 109.47246 * 175.78486 * 9 7 6 32 32 H 1.09003 * 109.47242 * 295.78125 * 9 7 6 33 33 H 1.08998 * 109.47169 * 55.78004 * 9 7 6 34 34 H 1.09005 * 109.47125 * 84.68879 * 13 12 10 35 35 H 1.08998 * 109.47055 * 204.69336 * 13 12 10 36 36 H 1.09001 * 109.47023 * 324.68986 * 13 12 10 37 37 H 1.08998 * 109.46768 * 209.99950 * 14 12 10 38 38 H 1.08996 * 109.47550 * 330.00690 * 14 12 10 39 39 H 0.97005 * 119.99563 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2342 0.0414 -0.0007 6 7 5.5346 0.4154 -0.0072 7 6 6.6877 -0.4883 -0.0092 8 1 7.5464 0.0193 -0.4486 9 6 6.3568 -1.7354 -0.8313 10 6 7.0126 -0.8912 1.4062 11 8 6.2146 -0.6810 2.2949 12 7 8.1900 -1.4853 1.6843 13 6 9.1872 -1.6660 0.6265 14 6 8.4725 -1.9501 3.0446 15 6 8.0055 -3.3750 3.1956 16 1 7.5441 -3.8832 2.3619 17 6 8.1674 -4.0297 4.3982 18 7 8.7290 -3.4106 5.4135 19 14 7.5879 -5.7956 4.5855 20 1 8.6903 -6.7201 4.2177 21 1 7.1880 -6.0384 5.9949 22 1 6.4249 -6.0323 3.6931 23 7 5.5844 1.7016 -0.0103 24 7 4.3951 2.1917 -0.0067 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8495 -0.9678 0.0043 31 1 7.2387 -2.3729 -0.8954 32 1 5.5467 -2.2835 -0.3502 33 1 6.0494 -1.4386 -1.8341 34 1 9.7821 -0.7578 0.5290 35 1 9.8390 -2.5018 0.8805 36 1 8.6824 -1.8727 -0.3172 37 1 9.5452 -1.8977 3.2310 38 1 7.9479 -1.3180 3.7610 39 1 8.8432 -3.8714 6.2595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900519685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:59 Heat of formation + Delta-G solvation = 31.174840 kcal Electronic energy + Delta-G solvation = -22439.163245 eV Core-core repulsion = 18999.307535 eV Total energy + Delta-G solvation = -3439.855711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.14825 -39.43861 -37.98689 -35.26286 -35.05255 -32.74753 -31.95178 -30.64555 -27.91621 -27.73673 -26.34854 -25.82941 -24.67423 -23.26386 -21.37734 -21.28990 -19.07089 -17.29053 -17.04320 -16.62694 -16.33806 -16.15272 -15.49871 -15.37208 -15.07782 -14.74095 -14.53652 -14.09576 -13.72579 -13.17793 -12.89907 -12.78439 -12.54351 -12.25011 -12.21712 -11.87747 -11.78895 -11.57966 -11.44638 -11.28931 -10.98961 -10.72464 -10.67580 -10.35507 -10.25063 -9.91080 -9.75746 -9.16306 -8.85291 -8.52948 -7.87271 -6.13825 -4.19900 1.76066 2.35131 2.63408 3.00228 3.23719 3.31314 3.34462 3.39418 3.68281 4.33721 4.40153 4.61658 4.66688 4.76828 4.98973 5.07697 5.13993 5.18239 5.20924 5.23969 5.35866 5.38379 5.47203 5.49129 5.54322 5.72628 5.76895 5.93113 6.08463 6.18108 6.65848 6.87879 6.95877 7.28107 7.34692 7.80683 8.09428 8.12419 8.64313 8.66855 8.85646 9.45521 10.94397 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.004504 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.205996 B = 6215.588793 C = 7113.796210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.158 3.842 4 C -0.041 4.041 5 C 0.006 3.994 6 N -0.270 5.270 7 C 0.121 3.879 8 H 0.130 0.870 9 C -0.162 4.162 10 C 0.498 3.502 11 O -0.521 6.521 12 N -0.591 5.591 13 C 0.069 3.931 14 C 0.245 3.755 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 N -0.082 5.082 24 N -0.263 5.263 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.190 0.810 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 4.064 -15.355 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C 0.079 3.921 4 C -0.179 4.179 5 C -0.146 4.146 6 N -0.063 5.063 7 C 0.015 3.985 8 H 0.148 0.852 9 C -0.220 4.220 10 C 0.281 3.719 11 O -0.397 6.397 12 N -0.323 5.323 13 C -0.075 4.075 14 C 0.127 3.873 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 N -0.061 5.061 24 N -0.132 5.132 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.207 0.793 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.622 5.201 -14.657 17.320 hybrid contribution -0.889 -1.869 0.296 2.090 sum -8.511 3.332 -14.361 17.023 Atomic orbital electron populations 1.22747 0.80255 1.03036 1.00139 1.87825 1.20107 1.27224 1.95531 1.20197 0.85747 0.84770 1.01366 1.21413 0.96289 0.89888 1.10296 1.23168 0.82759 1.02316 1.06318 1.46911 1.06891 1.06045 1.46428 1.21695 0.87274 0.91402 0.98131 0.85192 1.22220 1.05129 0.95083 0.99581 1.19995 0.83333 0.79835 0.88747 1.90763 1.47586 1.54368 1.46993 1.48097 1.14263 1.56906 1.13037 1.21934 0.92845 1.02112 0.90576 1.19398 0.96990 0.95070 0.75859 1.21382 1.40474 0.97327 0.97897 0.92338 1.24944 0.95011 0.98563 0.95487 1.69931 1.43212 1.37208 1.02682 0.86473 0.79019 0.84237 0.77561 1.20537 1.21008 1.19862 1.78241 1.17357 0.90541 1.19921 1.74914 0.94660 1.26293 1.17298 0.93934 0.89339 0.93761 0.91281 0.91444 0.79276 0.88199 0.90223 0.90352 0.93109 0.89814 0.92086 0.94511 0.93659 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.68 10.09 -35.23 -0.36 -5.04 16 3 C 0.16 1.91 6.56 36.00 0.24 2.15 16 4 C -0.04 -0.66 7.22 -82.78 -0.60 -1.25 16 5 C 0.01 0.09 9.83 -17.04 -0.17 -0.08 16 6 N -0.27 -4.54 2.85 -55.89 -0.16 -4.70 16 7 C 0.12 1.79 2.82 -69.09 -0.19 1.59 16 8 H 0.13 1.58 7.48 -51.92 -0.39 1.19 16 9 C -0.16 -1.80 8.47 37.16 0.31 -1.48 16 10 C 0.50 10.04 6.97 -10.98 -0.08 9.97 16 11 O -0.52 -13.22 15.88 5.56 0.09 -13.13 16 12 N -0.59 -11.79 2.86 -182.95 -0.52 -12.31 16 13 C 0.07 0.96 9.86 59.85 0.59 1.55 16 14 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 15 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.08 -1.51 13.16 60.35 0.79 -0.72 16 24 N -0.26 -4.74 12.41 33.29 0.41 -4.33 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.19 2.68 7.30 -52.48 -0.38 2.30 16 31 H 0.10 0.96 5.80 -51.93 -0.30 0.66 16 32 H 0.08 0.97 7.40 -51.93 -0.38 0.58 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 36 H 0.06 0.64 4.56 -51.93 -0.24 0.40 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -35.60 333.27 -3.65 -39.25 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.42 Total: -1.82 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 0.77 Total: 6.86 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 1.26 Total: -47.35 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.27 Total: -18.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.60 -3.65 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900519685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.425 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds