Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99893 * 2 1 4 4 C 1.50702 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.35358 * 126.74941 * 0.02562 * 4 3 2 6 6 N 1.35313 * 106.17083 * 179.97438 * 5 4 3 7 7 C 1.46506 * 125.86321 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46566 * 204.99904 * 7 6 5 9 9 C 1.52997 * 109.47289 * 325.00170 * 7 6 5 10 10 C 1.50697 * 109.47015 * 85.00628 * 7 6 5 11 11 O 1.21283 * 120.00261 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00075 * 180.02562 * 10 7 6 13 13 C 1.46498 * 119.99953 * 359.97438 * 12 10 7 14 14 C 1.46500 * 120.00084 * 180.02562 * 12 10 7 15 15 C 1.50698 * 109.47587 * 89.99577 * 14 12 10 16 16 H 1.08008 * 119.99838 * 359.97438 * 15 14 12 17 17 C 1.37872 * 120.00427 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99735 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47165 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46942 * 120.00269 * 19 17 15 22 22 H 1.48502 * 109.47660 * 240.00124 * 19 17 15 23 23 N 1.28709 * 108.26692 * 0.26499 * 6 5 4 24 24 N 1.28637 * 110.17914 * 359.55739 * 23 6 5 25 25 H 1.09000 * 109.47567 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47189 * 300.00292 * 1 2 3 27 27 H 1.09001 * 109.47129 * 60.00114 * 1 2 3 28 28 H 1.09002 * 109.46937 * 60.00350 * 3 2 1 29 29 H 1.08994 * 109.47385 * 300.00197 * 3 2 1 30 30 H 1.07999 * 126.91319 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 32 32 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 33 33 H 1.09004 * 109.47261 * 300.00128 * 9 7 6 34 34 H 1.09001 * 109.47076 * 90.00302 * 13 12 10 35 35 H 1.08996 * 109.47427 * 210.00785 * 13 12 10 36 36 H 1.08999 * 109.47290 * 330.00489 * 13 12 10 37 37 H 1.08995 * 109.46789 * 209.99681 * 14 12 10 38 38 H 1.08999 * 109.46866 * 329.99207 * 14 12 10 39 39 H 0.97001 * 119.99848 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2342 0.0414 0.0007 6 7 5.5346 0.4155 0.0007 7 6 6.6877 -0.4882 0.0013 8 1 7.5480 0.0210 0.4356 9 6 6.3601 -1.7325 0.8291 10 6 7.0070 -0.8960 -1.4138 11 8 6.3371 -0.4737 -2.3325 12 7 8.0365 -1.7307 -1.6586 13 6 8.8454 -2.2413 -0.5490 14 6 8.3473 -2.1267 -3.0345 15 6 9.3275 -1.1489 -3.6295 16 1 9.6831 -0.3154 -3.0417 17 6 9.7703 -1.3181 -4.9241 18 7 9.3369 -2.3326 -5.6400 19 14 10.9848 -0.1056 -5.6618 20 1 11.3133 0.9385 -4.6583 21 1 12.2247 -0.8231 -6.0532 22 1 10.3823 0.5314 -6.8604 23 7 5.5844 1.7016 0.0064 24 7 4.3951 2.1917 0.0007 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8495 -0.9678 0.0006 31 1 7.2179 -2.4051 0.8291 32 1 5.4997 -2.2417 0.3948 33 1 6.1291 -1.4376 1.8527 34 1 8.4142 -3.1734 -0.1839 35 1 9.8631 -2.4224 -0.8946 36 1 8.8606 -1.5077 0.2571 37 1 8.7843 -3.1252 -3.0352 38 1 7.4324 -2.1301 -3.6270 39 1 9.6482 -2.4515 -6.5510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900519686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = 34.385211 kcal Electronic energy + Delta-G solvation = -22393.058042 eV Core-core repulsion = 18953.341544 eV Total energy + Delta-G solvation = -3439.716498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.14251 -39.48015 -38.01407 -35.22159 -35.16193 -32.76307 -31.93742 -30.64914 -27.80983 -27.77197 -26.48565 -25.84628 -24.63973 -23.25530 -21.36877 -21.31759 -19.11164 -17.33755 -17.02987 -16.59069 -16.36449 -16.15094 -15.59534 -15.32730 -15.11701 -14.80434 -14.53216 -13.93613 -13.79384 -13.26102 -12.91391 -12.82637 -12.54371 -12.36055 -12.20605 -11.85595 -11.73144 -11.56889 -11.42569 -11.26896 -10.95210 -10.71127 -10.68318 -10.34907 -10.23000 -9.92673 -9.71454 -9.14784 -8.86908 -8.51057 -7.88488 -6.12343 -4.17603 1.76445 2.35912 2.64662 3.00702 3.26613 3.35036 3.36898 3.39261 3.65880 4.37505 4.38915 4.59006 4.64893 4.75268 4.95307 5.06222 5.11432 5.19323 5.22653 5.24215 5.32807 5.36873 5.41487 5.43862 5.52183 5.63207 5.69195 5.90764 6.06624 6.18315 6.65413 6.86648 6.93018 7.26217 7.34369 7.83049 8.09948 8.12648 8.66013 8.67919 8.88042 9.48107 10.95907 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.003993 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.623305 B = 7009.832350 C = 7278.933717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.157 3.843 4 C -0.039 4.039 5 C -0.004 4.004 6 N -0.268 5.268 7 C 0.121 3.879 8 H 0.134 0.866 9 C -0.172 4.172 10 C 0.497 3.503 11 O -0.519 6.519 12 N -0.591 5.591 13 C 0.073 3.927 14 C 0.246 3.754 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 N -0.074 5.074 24 N -0.264 5.264 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.189 0.811 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -0.870 16.303 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C 0.079 3.921 4 C -0.177 4.177 5 C -0.155 4.155 6 N -0.060 5.060 7 C 0.015 3.985 8 H 0.151 0.849 9 C -0.229 4.229 10 C 0.279 3.721 11 O -0.394 6.394 12 N -0.324 5.324 13 C -0.070 4.070 14 C 0.128 3.872 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 N -0.053 5.053 24 N -0.132 5.132 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.206 0.794 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.420 0.308 15.604 18.766 hybrid contribution 0.063 -0.200 -0.599 0.635 sum -10.357 0.108 15.005 18.233 Atomic orbital electron populations 1.22746 0.80262 1.02992 1.00189 1.87809 1.20103 1.27310 1.95547 1.20205 0.85769 0.84701 1.01422 1.21418 0.96261 0.89925 1.10065 1.23124 0.82848 1.02228 1.07270 1.46887 1.06764 1.06103 1.46278 1.21668 0.87495 0.91320 0.98064 0.84850 1.22421 1.05334 0.95491 0.99704 1.20017 0.82310 0.80767 0.88973 1.90776 1.50130 1.53526 1.45016 1.48098 1.28668 1.45380 1.10229 1.21926 0.97438 0.98055 0.89617 1.19385 0.97380 0.95602 0.74851 1.21442 1.25669 1.11340 0.98509 0.92294 1.24933 0.96719 0.95663 0.96704 1.69937 1.43958 1.29383 1.09931 0.86416 0.80546 0.81053 0.79293 1.19708 1.20862 1.20782 1.78281 1.17247 0.90511 1.19269 1.74936 0.94664 1.26277 1.17356 0.89366 0.93907 0.93763 0.91412 0.91244 0.79360 0.87717 0.90572 0.90411 0.92774 0.90030 0.92234 0.94459 0.93709 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.47 10.09 -35.23 -0.36 -4.83 16 3 C 0.16 1.88 6.56 36.01 0.24 2.11 16 4 C -0.04 -0.62 7.22 -82.77 -0.60 -1.22 16 5 C 0.00 -0.06 10.01 -17.04 -0.17 -0.23 16 6 N -0.27 -4.52 2.75 -55.89 -0.15 -4.67 16 7 C 0.12 1.77 2.85 -69.08 -0.20 1.57 16 8 H 0.13 1.71 7.40 -51.93 -0.38 1.33 16 9 C -0.17 -1.69 8.47 37.16 0.31 -1.37 16 10 C 0.50 9.98 7.14 -10.99 -0.08 9.91 16 11 O -0.52 -13.28 16.00 5.55 0.09 -13.19 16 12 N -0.59 -11.66 2.86 -182.96 -0.52 -12.18 16 13 C 0.07 0.99 8.80 59.85 0.53 1.51 16 14 C 0.25 6.21 5.16 -5.19 -0.03 6.19 16 15 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 19 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 N -0.07 -1.42 13.16 60.35 0.79 -0.62 16 24 N -0.26 -4.86 12.41 33.29 0.41 -4.45 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.19 2.45 7.18 -52.49 -0.38 2.08 16 31 H 0.10 0.85 4.53 -51.93 -0.24 0.62 16 32 H 0.08 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.57 6.95 -51.93 -0.36 0.21 16 35 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.06 0.62 6.01 -51.93 -0.31 0.30 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -36.57 331.25 -3.68 -40.24 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.35 Total: -2.99 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.70 Total: 6.34 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 1.27 Total: -47.44 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.27 Total: -18.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.57 -3.68 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900519686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.626 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds