Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33111 * 119.99982 * 2 1 4 4 F 1.35100 * 120.00446 * 5.39464 * 3 2 1 5 5 C 1.47296 * 119.99911 * 185.39169 * 3 2 1 6 6 O 1.21599 * 120.00795 * 265.46740 * 5 3 2 7 7 N 1.34779 * 119.99601 * 85.47134 * 5 3 2 8 8 C 1.46966 * 120.59138 * 174.82607 * 7 5 3 9 9 C 1.53367 * 108.63439 * 235.24101 * 8 7 5 10 10 N 1.46963 * 108.63716 * 310.58015 * 9 8 7 11 11 C 1.36943 * 120.59201 * 235.20308 * 10 9 8 12 12 H 1.07994 * 120.00362 * 21.86229 * 11 10 9 13 13 C 1.38813 * 119.99583 * 201.59316 * 11 10 9 14 14 N 1.31621 * 119.99603 * 220.15222 * 13 11 10 15 15 Si 1.86801 * 120.00184 * 40.15028 * 13 11 10 16 16 H 1.48498 * 109.46741 * 95.53181 * 15 13 11 17 17 H 1.48499 * 109.46780 * 215.52857 * 15 13 11 18 18 H 1.48492 * 109.47257 * 335.52900 * 15 13 11 19 19 C 1.46964 * 118.81345 * 55.47191 * 10 9 8 20 20 C 1.46967 * 120.59530 * 354.84167 * 7 5 3 21 21 C 1.50700 * 119.99859 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49869 * 13.66347 * 21 2 1 23 23 C 1.52996 * 117.50103 * 305.04047 * 21 2 1 24 24 H 1.09002 * 109.47476 * 90.00009 * 1 2 3 25 25 H 1.09004 * 109.47548 * 210.00207 * 1 2 3 26 26 H 1.09001 * 109.47539 * 330.00288 * 1 2 3 27 27 H 1.09006 * 109.61357 * 115.50074 * 8 7 5 28 28 H 1.08997 * 109.61463 * 354.98778 * 8 7 5 29 29 H 1.09003 * 109.61565 * 190.83315 * 9 8 7 30 30 H 1.09009 * 109.74790 * 70.40387 * 9 8 7 31 31 H 0.97000 * 120.00031 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.60818 * 64.27199 * 19 10 9 33 33 H 1.09004 * 109.61154 * 184.77578 * 19 10 9 34 34 H 1.09003 * 109.60943 * 244.49670 * 20 7 5 35 35 H 1.08992 * 109.60638 * 4.83940 * 20 7 5 36 36 H 1.08997 * 115.54625 * 159.36998 * 21 2 1 37 37 H 1.08994 * 117.49879 * 359.97438 * 22 21 2 38 38 H 1.09001 * 117.49736 * 145.01604 * 22 21 2 39 39 H 1.08995 * 117.50105 * 214.97782 * 23 21 2 40 40 H 1.09003 * 117.49992 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1528 0.0000 4 9 1.5016 2.3202 0.1100 5 6 3.6406 1.1556 -0.1199 6 8 4.3323 1.1905 0.8796 7 7 4.2173 1.1195 -1.3375 8 6 5.6756 1.2357 -1.4781 9 6 5.9850 2.3965 -2.4315 10 7 5.1668 2.2406 -3.6424 11 6 5.7527 2.2047 -4.8796 12 1 6.7948 1.9380 -4.9761 13 6 5.0058 2.5058 -6.0102 14 7 5.1684 1.8047 -7.1122 15 14 3.7699 3.9059 -5.9677 16 1 4.4005 5.1391 -6.5032 17 1 2.5916 3.5514 -6.7989 18 1 3.3353 4.1402 -4.5672 19 6 3.7081 2.1299 -3.5021 20 6 3.3991 0.9635 -2.5484 21 6 2.2604 -1.3051 0.0006 22 6 1.4716 -2.5764 -0.3194 23 6 1.9389 -2.3060 1.1121 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 6.0788 0.3092 -1.8870 28 1 6.1225 1.4335 -0.5039 29 1 7.0415 2.3786 -2.6992 30 1 5.7461 3.3439 -1.9481 31 1 4.6462 2.0148 -7.9022 32 1 3.3087 3.0573 -3.0916 33 1 3.2605 1.9359 -4.4769 34 1 3.6402 0.0176 -3.0334 35 1 2.3428 0.9784 -2.2804 36 1 3.2925 -1.2522 -0.3459 37 1 0.4076 -2.4689 -0.5300 38 1 1.9846 -3.3602 -0.8768 39 1 2.7593 -2.9119 1.4966 40 1 1.1826 -2.0204 1.8433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900776255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = 1.006128 kcal Electronic energy + Delta-G solvation = -23209.755523 eV Core-core repulsion = 19748.671637 eV Total energy + Delta-G solvation = -3461.083886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.89910 -39.97681 -38.10812 -37.07114 -34.09029 -33.17869 -31.64775 -30.75626 -28.55223 -26.91831 -24.09337 -23.30075 -23.10827 -22.55402 -21.40217 -19.69951 -18.45627 -17.69678 -16.98425 -16.43872 -16.28305 -15.35974 -14.88015 -14.75134 -14.66720 -14.34828 -14.23163 -14.06734 -13.70575 -13.34654 -12.95715 -12.70195 -12.56702 -12.36215 -12.21810 -11.97666 -11.75345 -11.62789 -11.14221 -11.06398 -10.86688 -10.65207 -10.48028 -10.43342 -10.26382 -9.76739 -9.51505 -8.84968 -8.65600 -8.30586 -7.15884 -6.15371 -3.28211 1.35517 2.46112 3.07505 3.33239 3.46106 3.52438 3.70172 4.12072 4.28734 4.48031 4.59132 4.72951 4.77445 4.84417 5.05949 5.14846 5.20734 5.37103 5.43620 5.49316 5.53712 5.61545 5.67793 5.72228 5.85893 5.85962 5.89724 5.96114 5.98242 6.01775 6.14884 6.37902 6.44043 6.52255 6.69010 6.77155 7.51634 7.78583 8.12809 8.16956 8.81341 9.62028 10.00245 10.98019 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.005379 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.355162 B = 5204.605894 C = 5365.237589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C 0.022 3.978 4 F -0.125 7.125 5 C 0.546 3.454 6 O -0.533 6.533 7 N -0.583 5.583 8 C 0.095 3.905 9 C 0.133 3.867 10 N -0.599 5.599 11 C -0.278 4.278 12 H 0.086 0.914 13 C 0.041 3.959 14 N -0.872 5.872 15 Si 0.826 3.174 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.259 1.259 19 C 0.133 3.867 20 C 0.085 3.915 21 C -0.121 4.121 22 C -0.167 4.167 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 -7.097 13.175 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.098 4.098 3 C -0.001 4.001 4 F -0.104 7.104 5 C 0.331 3.669 6 O -0.410 6.410 7 N -0.315 5.315 8 C -0.028 4.028 9 C 0.006 3.994 10 N -0.322 5.322 11 C -0.405 4.405 12 H 0.103 0.897 13 C -0.161 4.161 14 N -0.511 5.511 15 Si 0.652 3.348 16 H -0.220 1.220 17 H -0.219 1.219 18 H -0.183 1.183 19 C 0.006 3.994 20 C -0.039 4.039 21 C -0.139 4.139 22 C -0.204 4.204 23 C -0.199 4.199 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.454 -7.073 13.480 17.413 hybrid contribution -0.859 1.257 -0.314 1.554 sum -9.312 -5.816 13.166 17.144 Atomic orbital electron populations 1.20798 0.90115 1.03359 1.03209 1.21571 0.96368 0.91928 0.99894 1.19116 0.90248 0.81919 1.08778 1.91500 1.79179 1.46274 1.93428 1.18282 0.86861 0.77802 0.83945 1.90793 1.63656 1.50328 1.36272 1.48060 1.08657 1.69355 1.05382 1.22339 0.78414 1.00986 1.01046 1.21333 0.96484 0.94234 0.87339 1.44337 1.00869 1.84410 1.02559 1.18767 0.97818 1.42798 0.81083 0.89674 1.25063 0.97075 0.98818 0.95134 1.70179 1.41496 1.35474 1.03956 0.87750 0.81361 0.87010 0.78641 1.21974 1.21937 1.18319 1.21753 0.85863 0.94243 0.97520 1.22661 0.93894 1.01896 0.85440 1.20880 0.99562 0.87686 1.05807 1.23036 1.00707 0.98053 0.98581 1.22970 1.03709 1.01401 0.91853 0.90026 0.90889 0.90893 0.90924 0.89484 0.90398 0.95470 0.92688 0.94870 0.90242 0.90314 0.90833 0.86841 0.88117 0.88116 0.88176 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.04 36.00 0.33 -0.80 16 2 C -0.10 -1.19 5.40 -101.13 -0.55 -1.73 16 3 C 0.02 0.33 5.29 -37.68 -0.20 0.13 16 4 F -0.13 -1.99 16.31 2.25 0.04 -1.96 16 5 C 0.55 9.57 5.65 -12.58 -0.07 9.50 16 6 O -0.53 -10.62 16.53 5.28 0.09 -10.54 16 7 N -0.58 -10.10 2.95 -173.54 -0.51 -10.61 16 8 C 0.10 1.63 6.58 -3.60 -0.02 1.61 16 9 C 0.13 2.56 6.67 -3.60 -0.02 2.53 16 10 N -0.60 -13.62 2.78 -171.77 -0.48 -14.10 16 11 C -0.28 -7.36 9.87 -15.06 -0.15 -7.51 16 12 H 0.09 2.38 8.02 -52.49 -0.42 1.96 16 13 C 0.04 1.12 4.79 -17.43 -0.08 1.03 16 14 N -0.87 -25.24 13.97 55.49 0.78 -24.47 16 15 Si 0.83 20.38 26.34 -169.99 -4.48 15.90 16 16 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 18 H -0.26 -6.13 5.05 56.52 0.29 -5.85 16 19 C 0.13 2.78 4.59 -3.37 -0.02 2.76 16 20 C 0.09 1.46 6.52 -3.37 -0.02 1.44 16 21 C -0.12 -1.40 5.57 -91.77 -0.51 -1.91 16 22 C -0.17 -1.48 9.78 -26.73 -0.26 -1.74 16 23 C -0.16 -1.52 9.94 -26.73 -0.27 -1.78 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.07 0.70 7.48 -51.93 -0.39 0.32 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.44 7.02 -51.93 -0.36 1.07 16 29 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 30 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.72 6.91 -51.93 -0.36 0.36 16 33 H 0.08 1.77 5.23 -51.93 -0.27 1.49 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.12 6.01 -51.93 -0.31 0.80 16 36 H 0.11 1.52 7.02 -51.93 -0.36 1.16 16 37 H 0.10 0.77 6.76 -51.93 -0.35 0.42 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -30.68 321.84 -7.35 -38.02 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.78 Total: -0.65 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.85 Total: 3.54 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.21 Total: -49.18 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.48 Total: 15.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.68 -7.35 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.028 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds