Wall clock time and date at job start Tue Mar 31 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.46974 * 120.00227 * 2 1 3 5 5 N 1.46896 * 109.47059 * 63.36243 * 4 2 1 6 6 C 1.46898 * 110.99719 * 213.26555 * 5 4 2 7 7 C 1.50703 * 109.47031 * 75.10276 * 6 5 4 8 8 H 1.08005 * 119.99541 * 5.15615 * 7 6 5 9 9 C 1.37876 * 119.99979 * 185.16119 * 7 6 5 10 10 N 1.31509 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99672 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47162 * 89.99724 * 11 9 7 13 13 H 1.48499 * 109.47200 * 209.99787 * 11 9 7 14 14 H 1.48500 * 109.47172 * 329.99773 * 11 9 7 15 15 C 1.46902 * 110.99987 * 89.31765 * 5 4 2 16 16 N 1.46500 * 109.47138 * 284.69516 * 15 5 4 17 17 C 1.34948 * 126.03947 * 97.34227 * 16 15 5 18 18 C 1.35320 * 107.74554 * 179.97438 * 17 16 15 19 19 N 1.48017 * 126.03887 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00135 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00467 * 180.02562 * 19 18 17 22 22 C 1.39871 * 107.92085 * 0.02562 * 18 17 16 23 23 N 1.30839 * 108.20138 * 359.73876 * 22 18 17 24 24 H 1.09002 * 109.46864 * 304.43193 * 1 2 3 25 25 H 1.09003 * 109.47003 * 64.42662 * 1 2 3 26 26 H 1.09001 * 109.47208 * 184.42899 * 1 2 3 27 27 H 1.08998 * 109.47303 * 240.00032 * 2 1 3 28 28 H 1.09002 * 109.47263 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47076 * 300.00171 * 3 2 1 30 30 H 1.08998 * 109.46967 * 59.99826 * 3 2 1 31 31 H 1.08996 * 109.46963 * 303.35693 * 4 2 1 32 32 H 1.09007 * 109.47018 * 183.36187 * 4 2 1 33 33 H 1.09007 * 109.47158 * 195.09609 * 6 5 4 34 34 H 1.08999 * 109.47638 * 315.09970 * 6 5 4 35 35 H 0.96996 * 119.99971 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47089 * 44.69482 * 15 5 4 37 37 H 1.09001 * 109.46945 * 164.69467 * 15 5 4 38 38 H 1.07992 * 126.12712 * 359.97438 * 17 16 15 39 39 H 1.07995 * 125.89782 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6177 -2.1277 1.2092 6 6 1.3544 -2.6369 2.5617 7 6 0.0413 -2.0886 3.0581 8 1 -0.5790 -1.4961 2.4019 9 6 -0.3680 -2.3433 4.3498 10 7 0.3872 -3.0651 5.1487 11 14 -1.9952 -1.6631 4.9652 12 1 -3.0764 -2.6441 4.6932 13 1 -1.9074 -1.4157 6.4268 14 1 -2.2956 -0.3886 4.2646 15 6 2.6147 -2.9573 0.5193 16 7 2.5238 -2.7300 -0.9251 17 6 3.3007 -1.8965 -1.6481 18 6 2.8998 -1.9741 -2.9382 19 7 3.4784 -1.2255 -4.0765 20 8 4.4033 -0.4549 -3.8915 21 8 3.0297 -1.3801 -5.1983 22 6 1.8412 -2.8859 -3.0058 23 7 1.6185 -3.3436 -1.8005 24 1 -0.3633 0.5811 0.8476 25 1 -0.3633 0.4436 -0.9270 26 1 -0.3634 -1.0246 0.0794 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6283 -0.2434 2.1381 32 1 3.1284 -0.6694 1.2799 33 1 1.3075 -3.7257 2.5373 34 1 2.1555 -2.3227 3.2307 35 1 0.0994 -3.2440 6.0575 36 1 3.6127 -2.6904 0.8670 37 1 2.4240 -4.0087 0.7344 38 1 4.0993 -1.2783 -1.2657 39 1 1.3035 -3.1667 -3.8993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919944322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:41 Heat of formation + Delta-G solvation = 77.780978 kcal Electronic energy + Delta-G solvation = -22939.699705 eV Core-core repulsion = 19501.864988 eV Total energy + Delta-G solvation = -3437.834717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.35015 -41.27386 -37.81472 -36.37214 -34.52542 -33.21710 -31.94096 -31.22761 -27.76114 -26.95024 -26.79477 -25.48487 -24.06791 -21.73433 -21.53183 -21.06582 -19.80377 -18.96693 -18.36429 -17.42419 -16.86822 -16.15614 -15.90042 -15.21337 -14.89640 -14.63871 -14.10170 -13.78555 -13.61797 -13.49840 -12.83679 -12.43698 -12.08191 -11.90822 -11.76633 -11.63514 -11.42072 -11.31505 -11.03958 -11.03490 -10.89156 -10.84931 -10.65243 -10.58692 -10.26783 -10.12749 -9.73965 -9.56389 -9.48046 -8.63255 -7.85160 -6.22892 -4.25192 0.34181 1.32564 1.51846 2.30671 2.33897 3.20764 3.27839 3.30768 4.01130 4.24103 4.25386 4.45461 4.60369 4.95075 5.08533 5.10678 5.12743 5.24230 5.30528 5.44773 5.62658 5.78565 5.89834 5.93214 6.15048 6.18185 6.23588 6.30546 6.40081 6.51719 6.63235 6.74796 6.88643 6.94112 7.11358 7.50551 7.64475 7.81584 7.83840 8.16941 8.83049 9.40565 10.87337 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.004485 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.405392 B = 6242.065486 C = 6589.056855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.059 3.941 5 N -0.539 5.539 6 C 0.200 3.800 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.284 3.716 16 N -0.320 5.320 17 C 0.157 3.843 18 C -0.200 4.200 19 N 0.076 4.924 20 O -0.185 6.185 21 O -0.174 6.174 22 C 0.100 3.900 23 N -0.244 5.244 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.006 0.994 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.196 0.804 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 2.715 -10.585 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.264 5.264 6 C 0.077 3.923 7 C -0.547 4.547 8 H 0.086 0.914 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.726 3.274 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.074 3.926 16 N -0.100 5.100 17 C 0.000 4.000 18 C -0.299 4.299 19 N 0.589 4.411 20 O -0.395 6.395 21 O -0.387 6.387 22 C -0.090 4.090 23 N -0.063 5.063 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.213 0.787 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.778 1.429 -9.158 10.428 hybrid contribution 0.476 1.142 0.115 1.243 sum 5.254 2.571 -9.043 10.770 Atomic orbital electron populations 1.21664 0.94347 1.03257 0.99754 1.21295 0.97432 0.94948 0.97668 1.21832 1.00333 0.96578 1.01713 1.22303 0.96274 0.88983 0.99294 1.61770 1.39938 1.01462 1.23206 1.19819 0.97278 0.95777 0.79465 1.21085 1.03719 1.33130 0.96781 0.91365 1.24961 0.97518 0.95230 0.96621 1.69927 1.37620 1.38720 1.07404 0.86478 0.83582 0.79473 0.77819 1.20520 1.21237 1.19773 1.22628 0.96223 1.01302 0.72426 1.49480 1.22566 1.28884 1.09057 1.22200 0.95719 0.92091 0.89948 1.21010 1.09144 1.12244 0.87511 1.42480 0.98840 0.98565 1.01187 1.94527 1.20763 1.32952 1.91256 1.94522 1.64492 1.70992 1.08700 1.23930 0.94255 0.93336 0.97516 1.77861 1.11304 1.19117 0.98034 0.92961 0.94703 0.90811 0.92610 0.93218 0.93031 0.92432 0.89043 0.95505 0.95109 0.97603 0.92691 0.90544 0.86674 0.78712 0.77939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.07 37.16 0.34 -1.85 16 2 C -0.09 -1.39 2.93 -90.62 -0.27 -1.66 16 3 C -0.15 -1.88 9.19 37.16 0.34 -1.53 16 4 C 0.06 0.95 4.22 -3.83 -0.02 0.94 16 5 N -0.54 -9.48 3.73 -239.98 -0.90 -10.38 16 6 C 0.20 4.42 4.65 -4.98 -0.02 4.39 16 7 C -0.51 -12.79 8.53 -34.44 -0.29 -13.09 16 8 H 0.07 1.74 7.69 -52.48 -0.40 1.33 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -24.57 13.29 55.43 0.74 -23.83 16 11 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.28 3.97 6.18 -63.31 -0.39 3.58 16 16 N -0.32 -4.30 3.08 -64.38 -0.20 -4.50 16 17 C 0.16 1.88 8.29 -17.22 -0.14 1.74 16 18 C -0.20 -2.62 7.10 -80.38 -0.57 -3.20 16 19 N 0.08 1.10 4.45 33.75 0.15 1.25 16 20 O -0.19 -2.77 19.02 -29.46 -0.56 -3.33 16 21 O -0.17 -2.62 19.05 -29.46 -0.56 -3.18 16 22 C 0.10 1.26 11.75 -17.36 -0.20 1.06 16 23 N -0.24 -3.55 12.58 30.62 0.39 -3.16 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.40 7.50 -51.93 -0.39 1.01 16 27 H 0.06 0.82 4.18 -51.93 -0.22 0.60 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.70 7.19 -51.93 -0.37 1.33 16 32 H 0.03 0.37 7.48 -51.92 -0.39 -0.01 16 33 H 0.03 0.72 7.62 -51.92 -0.40 0.33 16 34 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.08 0.87 7.61 -51.93 -0.40 0.48 16 37 H 0.12 1.63 7.62 -51.93 -0.40 1.23 16 38 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.16 333.46 -7.73 -35.90 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.47 Total: -1.03 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.33 Total: -8.19 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.18 Total: -40.63 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -1.12 Total: -6.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.16 -7.73 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919944322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.679 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds