Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46682 * 2 1 4 4 C 1.52992 * 109.47411 * 120.00012 * 2 1 3 5 5 N 1.46898 * 109.47271 * 177.90131 * 4 2 1 6 6 C 1.46904 * 111.00199 * 156.19916 * 5 4 2 7 7 C 1.50699 * 109.47557 * 288.08202 * 6 5 4 8 8 H 1.07999 * 119.99691 * 4.88767 * 7 6 5 9 9 C 1.37871 * 120.00296 * 184.89055 * 7 6 5 10 10 N 1.31518 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00371 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46893 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47197 * 119.99929 * 11 9 7 14 14 H 1.48495 * 109.47566 * 240.00105 * 11 9 7 15 15 C 1.46900 * 111.00111 * 280.16066 * 5 4 2 16 16 N 1.46492 * 109.47275 * 77.45540 * 15 5 4 17 17 N 1.40079 * 126.03906 * 70.61611 * 16 15 5 18 18 C 1.30839 * 108.21087 * 179.97438 * 17 16 15 19 19 C 1.39871 * 108.19695 * 0.26471 * 18 17 16 20 20 C 1.34945 * 126.03852 * 250.61294 * 16 15 5 21 21 N 1.48031 * 126.12446 * 0.02614 * 20 16 15 22 22 O 1.21799 * 120.00220 * 359.97438 * 21 20 16 23 23 O 1.21804 * 119.99807 * 179.97438 * 21 20 16 24 24 H 1.08998 * 109.46706 * 299.99873 * 1 2 3 25 25 H 1.08996 * 109.47434 * 59.99569 * 1 2 3 26 26 H 1.08996 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46864 * 240.00632 * 2 1 3 28 28 H 1.08998 * 109.47378 * 304.96736 * 3 2 1 29 29 H 1.09001 * 109.47423 * 64.96267 * 3 2 1 30 30 H 1.09004 * 109.46984 * 184.96675 * 3 2 1 31 31 H 1.09004 * 109.47210 * 57.89857 * 4 2 1 32 32 H 1.09008 * 109.47361 * 297.90395 * 4 2 1 33 33 H 1.09010 * 109.46574 * 48.08024 * 6 5 4 34 34 H 1.08998 * 109.47219 * 168.07511 * 6 5 4 35 35 H 0.96996 * 119.99949 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46680 * 317.45318 * 15 5 4 37 37 H 1.09001 * 109.46605 * 197.45882 * 15 5 4 38 38 H 1.07993 * 125.90532 * 179.97438 * 18 17 16 39 39 H 1.08004 * 126.04148 * 179.69428 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5082 -0.7653 1.2240 6 6 4.0538 -0.9128 2.5800 7 6 3.8738 0.3777 3.3372 8 1 3.3317 1.1964 2.8875 9 6 4.4011 0.5131 4.6038 10 7 5.0608 -0.4841 5.1515 11 14 4.1785 2.1129 5.5421 12 1 3.4043 3.0702 4.7116 13 1 3.4443 1.8479 6.8054 14 1 5.5093 2.6924 5.8554 15 6 3.9877 -1.8392 0.3438 16 7 3.8715 -1.4140 -1.0532 17 7 4.6526 -0.4381 -1.6854 18 6 4.2547 -0.3375 -2.9278 19 6 3.2049 -1.2406 -3.1247 20 6 2.9930 -1.8934 -1.9585 21 7 1.9756 -2.9412 -1.7173 22 8 1.8782 -3.4537 -0.6167 23 8 1.2358 -3.2909 -2.6195 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.6058 1.9814 -0.8421 29 1 1.7510 1.9301 0.9311 30 1 3.1264 1.4439 -0.0890 31 1 1.6464 -1.7375 1.2682 32 1 1.7078 -0.1861 2.1388 33 1 3.5275 -1.7145 3.0981 34 1 5.1151 -1.1541 2.5204 35 1 5.4321 -0.3887 6.0425 36 1 3.3866 -2.7345 0.5024 37 1 5.0311 -2.0570 0.5718 38 1 4.6629 0.3309 -3.6714 39 1 2.6609 -1.3916 -4.0454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919944819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = 93.189983 kcal Electronic energy + Delta-G solvation = -23707.115595 eV Core-core repulsion = 20269.949063 eV Total energy + Delta-G solvation = -3437.166532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63490 -41.24347 -37.73140 -36.71041 -34.39451 -33.07608 -31.97053 -31.11480 -27.43581 -26.80073 -26.67558 -26.17992 -23.99453 -21.74846 -21.64018 -20.96337 -19.86772 -18.70552 -18.62110 -17.80653 -16.55474 -15.95369 -15.68096 -15.05873 -14.70795 -14.32514 -14.18149 -13.93344 -13.59115 -13.54479 -12.68797 -12.38023 -12.03784 -11.89782 -11.73239 -11.58481 -11.41528 -11.34270 -11.20016 -11.00639 -10.90411 -10.77722 -10.68822 -10.51238 -10.26371 -9.94859 -9.67207 -9.43385 -9.16646 -8.54989 -7.64658 -6.13798 -4.15359 -0.10225 0.81368 1.67150 2.33174 2.35594 3.25202 3.33183 3.37570 4.12449 4.34092 4.58360 4.66372 4.94943 5.15548 5.21684 5.23778 5.30947 5.35425 5.45266 5.51238 5.79309 5.89451 5.94579 6.01151 6.09677 6.20261 6.25903 6.35376 6.44045 6.49402 6.70364 6.82530 6.95222 7.07667 7.15083 7.52416 7.61355 7.82035 7.95846 8.28926 8.91106 9.49102 10.96908 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.005386 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.807899 B = 5197.606184 C = 5257.821466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.129 4.129 4 C 0.058 3.942 5 N -0.532 5.532 6 C 0.200 3.800 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.264 3.736 16 N -0.305 5.305 17 N -0.193 5.193 18 C 0.030 3.970 19 C -0.175 4.175 20 C 0.117 3.883 21 N 0.054 4.946 22 O -0.154 6.154 23 O -0.132 6.132 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.091 0.909 33 H -0.001 1.001 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.202 0.798 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 -1.637 -15.295 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.186 4.186 4 C -0.070 4.070 5 N -0.257 5.257 6 C 0.076 3.924 7 C -0.544 4.544 8 H 0.084 0.916 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.727 3.273 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.054 3.946 16 N -0.095 5.095 17 N -0.021 5.021 18 C -0.153 4.153 19 C -0.208 4.208 20 C -0.092 4.092 21 N 0.574 4.426 22 O -0.366 6.366 23 O -0.350 6.350 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.219 0.781 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.944 -0.420 -14.317 14.622 hybrid contribution -1.134 -0.424 0.370 1.266 sum -4.078 -0.844 -13.947 14.555 Atomic orbital electron populations 1.21824 0.95829 1.01165 1.01603 1.21333 0.94560 0.97871 0.97960 1.21616 1.02334 0.94436 1.00218 1.22298 0.87423 0.98669 0.98576 1.61754 1.08208 1.41817 1.13902 1.19783 0.95180 0.97552 0.79873 1.21085 1.34897 0.99182 0.99188 0.91621 1.24959 0.95113 0.96831 0.97519 1.69950 1.36462 1.31226 1.15995 0.86418 0.77910 0.83349 0.79625 1.19673 1.21045 1.20951 1.22954 1.03830 0.93415 0.74378 1.49731 1.22543 1.26826 1.10445 1.77863 1.14027 1.03262 1.06997 1.23988 0.96478 0.99973 0.94870 1.21314 1.02383 0.99575 0.97562 1.21462 0.95200 0.98456 0.94105 1.42597 0.99740 0.99649 1.00586 1.94561 1.75433 1.56132 1.10524 1.94565 1.38033 1.64546 1.37820 0.92267 0.93171 0.93330 0.93211 0.94749 0.92776 0.91232 0.94815 0.89064 0.98328 0.94465 0.92806 0.88474 0.87411 0.78119 0.81177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.19 37.16 0.34 -1.80 16 2 C -0.10 -1.63 2.83 -90.62 -0.26 -1.88 16 3 C -0.13 -2.20 8.99 37.16 0.33 -1.86 16 4 C 0.06 1.10 4.24 -3.83 -0.02 1.09 16 5 N -0.53 -10.73 3.91 -239.98 -0.94 -11.67 16 6 C 0.20 4.84 4.71 -4.97 -0.02 4.82 16 7 C -0.50 -13.46 8.39 -34.44 -0.29 -13.75 16 8 H 0.07 1.76 7.60 -52.49 -0.40 1.36 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 C 0.26 4.61 6.11 -63.32 -0.39 4.22 16 16 N -0.31 -4.82 2.78 -61.05 -0.17 -4.99 16 17 N -0.19 -2.92 12.57 30.62 0.39 -2.54 16 18 C 0.03 0.33 12.03 -17.36 -0.21 0.12 16 19 C -0.18 -1.99 10.49 -40.01 -0.42 -2.41 16 20 C 0.12 1.68 5.25 -144.61 -0.76 0.92 16 21 N 0.05 0.81 4.41 32.87 0.15 0.96 16 22 O -0.15 -2.51 15.83 -29.46 -0.47 -2.98 16 23 O -0.13 -1.92 19.03 -29.46 -0.56 -2.48 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.82 3.76 -51.93 -0.20 0.63 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.33 7.82 -51.93 -0.41 0.92 16 31 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 32 H 0.09 1.91 6.96 -51.92 -0.36 1.54 16 33 H 0.00 -0.03 8.05 -51.92 -0.42 -0.45 16 34 H 0.04 0.96 7.67 -51.93 -0.40 0.56 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.10 1.66 4.93 -51.93 -0.26 1.40 16 37 H 0.11 1.85 7.61 -51.93 -0.40 1.46 16 38 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -29.01 326.83 -8.03 -37.04 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.28 Total: -0.43 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.78 Total: -9.07 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.16 Total: -43.15 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -1.03 Total: -5.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.01 -8.03 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919944819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.227 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds