Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46768 * 2 1 4 4 C 1.34816 * 126.59029 * 125.00008 * 3 2 1 5 5 C 1.36599 * 106.83211 * 179.73754 * 4 3 2 6 6 C 1.47528 * 125.76558 * 180.22102 * 5 4 3 7 7 O 1.21593 * 120.00364 * 353.66468 * 6 5 4 8 8 N 1.34777 * 119.99848 * 173.66423 * 6 5 4 9 9 C 1.46496 * 120.00181 * 3.75432 * 8 6 5 10 10 C 1.50704 * 109.47261 * 83.41452 * 9 8 6 11 11 H 1.07990 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99805 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99922 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00165 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47200 * 90.00020 * 14 12 10 16 16 H 1.48498 * 109.46763 * 209.99928 * 14 12 10 17 17 H 1.48498 * 109.46951 * 329.99768 * 14 12 10 18 18 C 1.46497 * 119.99793 * 183.75070 * 8 6 5 19 19 C 1.53000 * 109.47406 * 84.79664 * 18 8 6 20 20 O 1.42905 * 109.47129 * 64.99716 * 19 18 8 21 21 C 1.42895 * 113.99862 * 180.02562 * 20 19 18 22 22 N 1.34392 * 108.46334 * 0.23931 * 5 4 3 23 23 N 1.28763 * 109.52345 * 0.02562 * 22 5 4 24 24 H 1.09006 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47446 * 300.00094 * 1 2 3 26 26 H 1.09002 * 109.47343 * 60.00022 * 1 2 3 27 27 H 1.08995 * 109.47446 * 239.99906 * 2 1 3 28 28 H 1.09002 * 109.47343 * 119.99978 * 2 1 3 29 29 H 1.07990 * 126.58444 * 359.97438 * 4 3 2 30 30 H 1.08994 * 109.47475 * 203.41809 * 9 8 6 31 31 H 1.09004 * 109.47127 * 323.41995 * 9 8 6 32 32 H 0.96991 * 119.99996 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46656 * 204.79578 * 18 8 6 34 34 H 1.08996 * 109.47218 * 324.78870 * 18 8 6 35 35 H 1.08998 * 109.47128 * 184.99818 * 19 18 8 36 36 H 1.09000 * 109.46938 * 305.00070 * 19 18 8 37 37 H 1.09005 * 109.46886 * 299.99641 * 21 20 19 38 38 H 1.08997 * 109.47454 * 59.99740 * 21 20 19 39 39 H 1.08999 * 109.46865 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8714 1.9321 0.8867 5 6 3.0548 3.2308 0.5050 6 6 3.9170 4.2159 1.1852 7 8 4.4503 3.9312 2.2402 8 7 4.1135 5.4314 0.6371 9 6 3.4068 5.8043 -0.5907 10 6 2.0283 6.3054 -0.2444 11 1 1.7107 6.3428 0.7871 12 6 1.1727 6.7162 -1.2445 13 7 -0.0301 7.1540 -0.9423 14 14 1.7219 6.6509 -3.0288 15 1 1.3663 5.3306 -3.6081 16 1 1.0432 7.7266 -3.7952 17 1 3.1925 6.8435 -3.1014 18 6 5.0340 6.3797 1.2693 19 6 6.4620 6.0944 0.8001 20 8 6.5622 6.3482 -0.6026 21 6 7.8628 6.1106 -1.1448 22 7 2.3167 3.4595 -0.5946 23 7 1.6857 2.3854 -0.9203 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3260 1.4399 1.7337 30 1 3.9606 6.5900 -1.1044 31 1 3.3239 4.9335 -1.2410 32 1 -0.6318 7.4433 -1.6458 33 1 4.7562 7.3963 0.9906 34 1 4.9790 6.2722 2.3526 35 1 7.1567 6.7405 1.3368 36 1 6.7082 5.0514 0.9991 37 1 8.5869 6.7569 -0.6485 38 1 8.1378 5.0679 -0.9861 39 1 7.8561 6.3265 -2.2131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931897724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = 35.785340 kcal Electronic energy + Delta-G solvation = -23011.261201 eV Core-core repulsion = 19571.605417 eV Total energy + Delta-G solvation = -3439.655784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63529 -38.94973 -37.39015 -35.23964 -34.82071 -32.31184 -30.92633 -30.63109 -29.20979 -27.37824 -26.03513 -24.44645 -23.60768 -22.29330 -21.51231 -21.27855 -18.81537 -17.06155 -16.79756 -16.28060 -15.95060 -15.71956 -15.45111 -15.24554 -14.73270 -14.36815 -14.16011 -13.90282 -13.58133 -13.22564 -12.67597 -12.41188 -12.35257 -12.02594 -11.93336 -11.89170 -11.70314 -11.56270 -11.23048 -10.85995 -10.62922 -10.55748 -10.01907 -9.89968 -9.83212 -9.49276 -9.32443 -9.22071 -8.72979 -8.34890 -7.61587 -5.89848 -3.85391 1.62082 2.44217 2.47381 3.47014 3.52984 3.57063 3.81391 3.97790 4.12571 4.44343 4.61057 4.75337 4.79799 4.98977 5.15138 5.32984 5.39418 5.42007 5.45743 5.47031 5.53474 5.60172 5.64011 5.68207 5.77586 5.84866 5.98181 6.05286 6.33489 6.34028 6.76395 6.78875 7.27855 7.41887 7.55970 7.80455 8.24751 8.57227 8.70493 8.94886 9.13271 9.73264 11.23818 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.007739 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.615094 B = 3617.196881 C = 5089.720675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.374 5.374 4 C 0.074 3.926 5 C -0.087 4.087 6 C 0.603 3.397 7 O -0.577 6.577 8 N -0.567 5.567 9 C 0.204 3.796 10 C -0.511 4.511 11 H 0.069 0.931 12 C 0.081 3.919 13 N -0.903 5.903 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.291 1.291 17 H -0.264 1.264 18 C 0.122 3.878 19 C 0.047 3.953 20 O -0.379 6.379 21 C 0.033 3.967 22 N -0.145 5.145 23 N -0.082 5.082 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.196 0.804 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.628 -12.289 1.972 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.159 5.159 4 C -0.083 4.083 5 C -0.225 4.225 6 C 0.389 3.611 7 O -0.458 6.458 8 N -0.295 5.295 9 C 0.083 3.917 10 C -0.550 4.550 11 H 0.088 0.912 12 C -0.120 4.120 13 N -0.543 5.543 14 Si 0.696 3.304 15 H -0.196 1.196 16 H -0.218 1.218 17 H -0.188 1.188 18 C -0.002 4.002 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.064 4.064 22 N -0.018 5.018 23 N -0.062 5.062 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.212 0.788 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.750 -11.983 1.041 14.874 hybrid contribution 0.772 -0.456 0.041 0.898 sum 9.521 -12.440 1.083 15.703 Atomic orbital electron populations 1.22073 0.93126 1.02999 1.04351 1.21846 0.96655 0.77179 1.04212 1.50636 1.32246 1.11974 1.21068 1.23157 0.94486 0.94506 0.96109 1.21398 1.07380 0.94326 0.99426 1.16792 0.79411 0.81465 0.83397 1.90679 1.52974 1.79487 1.22691 1.47721 1.41688 1.12446 1.27604 1.20242 0.92232 0.97437 0.81824 1.21199 0.96557 1.41840 0.95385 0.91240 1.24684 0.94447 0.94413 0.98470 1.69905 1.07131 1.44328 1.32914 0.86939 0.79457 0.78032 0.85926 1.19618 1.21758 1.18836 1.21421 0.86383 0.94372 0.98000 1.23060 0.98222 0.99827 0.81988 1.88023 1.29926 1.88934 1.22926 1.22680 0.85248 0.99133 0.99353 1.75229 1.02268 1.14844 1.09507 1.82102 1.21063 0.90617 1.12409 0.90474 0.91694 0.90610 0.88993 0.88408 0.78763 0.94530 0.92491 0.92929 0.88992 0.89107 0.92878 0.93146 0.94549 0.94596 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.11 37.16 0.38 -1.22 16 2 C 0.12 1.16 7.26 -4.04 -0.03 1.13 16 3 N -0.37 -5.73 3.69 -61.06 -0.23 -5.96 16 4 C 0.07 1.19 11.28 -16.83 -0.19 1.00 16 5 C -0.09 -1.82 6.67 -83.55 -0.56 -2.37 16 6 C 0.60 13.23 7.57 -12.47 -0.09 13.14 16 7 O -0.58 -12.62 16.51 5.28 0.09 -12.53 16 8 N -0.57 -12.61 2.43 -176.29 -0.43 -13.04 16 9 C 0.20 5.09 3.72 -5.19 -0.02 5.07 16 10 C -0.51 -14.72 8.89 -34.44 -0.31 -15.03 16 11 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 12 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 13 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 14 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16 15 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 18 C 0.12 2.26 5.74 -4.04 -0.02 2.23 16 19 C 0.05 0.74 6.25 37.16 0.23 0.98 16 20 O -0.38 -6.59 10.31 -35.23 -0.36 -6.95 16 21 C 0.03 0.42 11.01 101.05 1.11 1.53 16 22 N -0.15 -3.38 8.06 32.85 0.26 -3.12 16 23 N -0.08 -1.68 13.64 60.35 0.82 -0.86 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.04 0.93 6.83 -51.93 -0.35 0.57 16 31 H 0.06 1.47 4.75 -51.93 -0.25 1.23 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 33 H 0.09 1.70 8.03 -51.93 -0.42 1.28 16 34 H 0.09 1.59 7.53 -51.93 -0.39 1.20 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -36.46 333.73 -3.95 -40.41 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.65 Total: -1.99 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 0.40 Total: 8.77 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 1.21 Total: -50.56 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.28 Total: -19.48 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.46 -3.95 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.196 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds