Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46768 * 2 1 4 4 C 1.34816 * 126.59029 * 125.00008 * 3 2 1 5 5 C 1.36599 * 106.83211 * 179.73754 * 4 3 2 6 6 C 1.47528 * 125.76558 * 180.22102 * 5 4 3 7 7 O 1.21593 * 120.00364 * 353.66468 * 6 5 4 8 8 N 1.34777 * 119.99848 * 173.66423 * 6 5 4 9 9 C 1.46496 * 120.00181 * 3.75432 * 8 6 5 10 10 C 1.50704 * 109.47261 * 83.41452 * 9 8 6 11 11 H 1.07990 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99805 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99922 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00165 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47200 * 90.00020 * 14 12 10 16 16 H 1.48498 * 109.46763 * 209.99928 * 14 12 10 17 17 H 1.48498 * 109.46951 * 329.99768 * 14 12 10 18 18 C 1.46497 * 119.99793 * 183.75070 * 8 6 5 19 19 C 1.53000 * 109.47406 * 84.79664 * 18 8 6 20 20 O 1.42905 * 109.47129 * 64.99716 * 19 18 8 21 21 C 1.42895 * 113.99862 * 180.02562 * 20 19 18 22 22 N 1.34392 * 108.46334 * 0.23931 * 5 4 3 23 23 N 1.28763 * 109.52345 * 0.02562 * 22 5 4 24 24 H 1.09006 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47446 * 300.00094 * 1 2 3 26 26 H 1.09002 * 109.47343 * 60.00022 * 1 2 3 27 27 H 1.08995 * 109.47446 * 239.99906 * 2 1 3 28 28 H 1.09002 * 109.47343 * 119.99978 * 2 1 3 29 29 H 1.07990 * 126.58444 * 359.97438 * 4 3 2 30 30 H 1.08994 * 109.47475 * 203.41809 * 9 8 6 31 31 H 1.09004 * 109.47127 * 323.41995 * 9 8 6 32 32 H 0.96991 * 119.99996 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46656 * 204.79578 * 18 8 6 34 34 H 1.08996 * 109.47218 * 324.78870 * 18 8 6 35 35 H 1.08998 * 109.47128 * 184.99818 * 19 18 8 36 36 H 1.09000 * 109.46938 * 305.00070 * 19 18 8 37 37 H 1.09005 * 109.46886 * 299.99641 * 21 20 19 38 38 H 1.08997 * 109.47454 * 59.99740 * 21 20 19 39 39 H 1.08999 * 109.46865 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8714 1.9321 0.8867 5 6 3.0548 3.2308 0.5050 6 6 3.9170 4.2159 1.1852 7 8 4.4503 3.9312 2.2402 8 7 4.1135 5.4314 0.6371 9 6 3.4068 5.8043 -0.5907 10 6 2.0283 6.3054 -0.2444 11 1 1.7107 6.3428 0.7871 12 6 1.1727 6.7162 -1.2445 13 7 -0.0301 7.1540 -0.9423 14 14 1.7219 6.6509 -3.0288 15 1 1.3663 5.3306 -3.6081 16 1 1.0432 7.7266 -3.7952 17 1 3.1925 6.8435 -3.1014 18 6 5.0340 6.3797 1.2693 19 6 6.4620 6.0944 0.8001 20 8 6.5622 6.3482 -0.6026 21 6 7.8628 6.1106 -1.1448 22 7 2.3167 3.4595 -0.5946 23 7 1.6857 2.3854 -0.9203 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3260 1.4399 1.7337 30 1 3.9606 6.5900 -1.1044 31 1 3.3239 4.9335 -1.2410 32 1 -0.6318 7.4433 -1.6458 33 1 4.7562 7.3963 0.9906 34 1 4.9790 6.2722 2.3526 35 1 7.1567 6.7405 1.3368 36 1 6.7082 5.0514 0.9991 37 1 8.5869 6.7569 -0.6485 38 1 8.1378 5.0679 -0.9861 39 1 7.8561 6.3265 -2.2131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931897724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = 8.101693 kcal Electronic energy + Delta-G solvation = -23012.461654 eV Core-core repulsion = 19571.605417 eV Total energy + Delta-G solvation = -3440.856237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.05158 -40.54829 -38.66322 -36.77433 -36.12653 -34.47954 -32.27131 -31.96682 -30.65506 -29.23990 -27.16444 -25.51536 -25.12982 -24.20859 -22.95827 -22.52417 -20.31227 -19.02262 -18.43385 -17.62905 -17.35598 -17.05254 -16.87999 -16.53822 -16.15368 -15.90097 -15.48333 -15.41351 -14.90405 -14.82206 -14.35138 -13.93822 -13.64690 -13.51144 -13.24933 -13.18020 -12.92424 -12.76890 -12.64599 -12.54537 -12.25544 -12.02327 -11.94008 -11.68553 -11.39927 -11.15277 -11.00781 -10.63292 -10.53992 -10.17862 -9.37874 -8.20009 -6.19028 0.30976 0.87088 1.33311 1.38598 1.44913 1.50994 2.24139 2.39592 2.43692 2.94190 3.19483 3.39412 3.54287 3.84948 4.03523 4.09275 4.15868 4.24413 4.32395 4.40486 4.45092 4.54398 4.56585 4.59771 4.71447 4.78457 4.85029 4.89598 4.94318 4.97079 5.22987 5.32898 5.61034 5.67155 5.77028 6.24064 6.31335 6.59335 6.77910 7.08668 7.33069 7.44291 8.97486 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.007739 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.615094 B = 3617.196881 C = 5089.720675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.354 5.354 4 C 0.105 3.895 5 C -0.130 4.130 6 C 0.598 3.402 7 O -0.581 6.581 8 N -0.578 5.578 9 C 0.223 3.777 10 C -0.500 4.500 11 H 0.023 0.977 12 C 0.028 3.972 13 N -0.951 5.951 14 Si 0.931 3.069 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.246 1.246 18 C 0.113 3.887 19 C 0.057 3.943 20 O -0.414 6.414 21 C 0.027 3.973 22 N -0.194 5.194 23 N -0.115 5.115 24 H 0.115 0.885 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.242 0.758 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -14.552 1.914 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.139 5.139 4 C -0.054 4.054 5 C -0.270 4.270 6 C 0.386 3.614 7 O -0.463 6.463 8 N -0.306 5.306 9 C 0.101 3.899 10 C -0.539 4.539 11 H 0.041 0.959 12 C -0.169 4.169 13 N -0.592 5.592 14 Si 0.755 3.245 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.169 1.169 18 C -0.010 4.010 19 C -0.020 4.020 20 O -0.334 6.334 21 C -0.069 4.069 22 N -0.067 5.067 23 N -0.095 5.095 24 H 0.133 0.867 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.163 0.837 29 H 0.258 0.742 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.688 -14.265 0.976 17.851 hybrid contribution 0.145 0.076 0.204 0.261 sum 10.832 -14.189 1.179 17.890 Atomic orbital electron populations 1.22076 0.93311 1.04790 1.02146 1.22520 0.96532 0.74250 1.07651 1.51034 1.30635 1.13032 1.19193 1.23758 0.92780 0.92778 0.96069 1.21641 1.08776 0.96289 1.00320 1.17026 0.79412 0.81571 0.83402 1.90648 1.53389 1.79639 1.22660 1.47741 1.42299 1.13407 1.27117 1.19817 0.90092 0.96916 0.83105 1.21278 0.98474 1.41094 0.93071 0.95895 1.25456 0.94363 0.94195 1.02880 1.70044 1.08610 1.46216 1.34357 0.85957 0.80062 0.77926 0.80535 1.19730 1.20998 1.16925 1.21651 0.87633 0.93366 0.98317 1.22935 0.96689 1.00307 0.82074 1.87961 1.32629 1.89267 1.23513 1.22885 0.83894 1.00179 0.99916 1.75134 1.03697 1.16645 1.11175 1.81952 1.21869 0.91444 1.14277 0.86662 0.93210 0.93488 0.86761 0.83721 0.74199 0.94724 0.92563 0.92840 0.89720 0.88479 0.89408 0.93570 0.92244 0.93890 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.11 71.98 0.73 -2.05 16 2 C 0.11 1.65 7.26 86.38 0.63 2.28 16 3 N -0.35 -10.11 3.69 -347.10 -1.28 -11.39 16 4 C 0.10 3.11 11.28 83.85 0.95 4.06 16 5 C -0.13 -5.43 6.67 40.82 0.27 -5.16 16 6 C 0.60 26.30 7.57 86.69 0.66 26.95 16 7 O -0.58 -24.93 16.51 -4.01 -0.07 -24.99 16 8 N -0.58 -26.03 2.43 -829.93 -2.02 -28.05 16 9 C 0.22 11.36 3.72 85.64 0.32 11.68 16 10 C -0.50 -29.94 8.89 25.60 0.23 -29.71 16 11 H 0.02 1.54 8.06 -2.92 -0.02 1.52 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.95 -61.84 13.96 21.45 0.30 -61.54 16 14 Si 0.93 47.26 27.47 68.60 1.88 49.15 16 15 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 17 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 18 C 0.11 4.18 5.74 86.38 0.50 4.67 16 19 C 0.06 1.74 6.25 71.98 0.45 2.19 16 20 O -0.41 -13.81 10.31 -148.98 -1.54 -15.34 16 21 C 0.03 0.64 11.01 113.37 1.25 1.88 16 22 N -0.19 -9.18 8.06 -49.99 -0.40 -9.58 16 23 N -0.12 -4.75 13.64 37.02 0.51 -4.25 16 24 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.14 0.95 8.08 -2.39 -0.02 0.93 16 29 H 0.24 4.67 8.06 -2.92 -0.02 4.65 16 30 H 0.03 1.77 6.83 -2.39 -0.02 1.75 16 31 H 0.06 2.95 4.75 -2.39 -0.01 2.94 16 32 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 33 H 0.08 3.19 8.03 -2.38 -0.02 3.17 16 34 H 0.10 3.40 7.53 -2.39 -0.02 3.38 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -83.86 333.73 4.80 -79.06 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.99 Total: 7.98 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.43 Total: 18.97 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -2.90 Total: -114.81 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.60 Total: -40.34 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -83.86 4.80 -79.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.158 kcal (2) G-P(sol) polarization free energy of solvation -83.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds