Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50704 * 119.99909 * 2 1 4 4 C 1.33113 * 119.99765 * 180.02562 * 2 1 3 5 5 F 1.35102 * 119.99572 * 184.99075 * 4 2 1 6 6 C 1.47291 * 120.00161 * 4.98664 * 4 2 1 7 7 O 1.21605 * 120.00096 * 94.24924 * 6 4 2 8 8 N 1.34779 * 120.00058 * 274.24290 * 6 4 2 9 9 C 1.48426 * 120.84020 * 184.28566 * 8 6 4 10 10 C 1.53888 * 107.38074 * 132.53694 * 9 8 6 11 11 H 1.08996 * 112.09716 * 182.52340 * 10 9 8 12 12 C 1.54550 * 108.36593 * 306.86454 * 10 9 8 13 13 C 1.54275 * 104.85118 * 89.29885 * 12 10 9 14 14 C 1.54551 * 104.84628 * 359.97438 * 13 12 10 15 15 H 1.09001 * 112.17713 * 146.41153 * 14 13 12 16 16 C 1.47163 * 120.70854 * 4.67433 * 8 6 4 17 17 N 1.48300 * 104.35816 * 24.70285 * 14 13 12 18 18 C 1.36936 * 128.07558 * 139.05584 * 17 14 13 19 19 H 1.08008 * 120.00198 * 198.24681 * 18 17 14 20 20 C 1.38811 * 119.99969 * 18.25433 * 18 17 14 21 21 N 1.31611 * 120.00473 * 7.29115 * 20 18 17 22 22 Si 1.86807 * 119.99878 * 187.29409 * 20 18 17 23 23 H 1.48501 * 109.47249 * 59.99698 * 22 20 18 24 24 H 1.48501 * 109.46943 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46774 * 299.99718 * 22 20 18 26 26 H 1.08994 * 109.47239 * 273.83963 * 1 2 3 27 27 H 1.09004 * 109.47176 * 33.83445 * 1 2 3 28 28 H 1.09000 * 109.47158 * 153.83819 * 1 2 3 29 29 H 1.09003 * 109.47065 * 269.99980 * 3 2 1 30 30 H 1.09001 * 109.46774 * 30.00022 * 3 2 1 31 31 H 1.08992 * 109.46970 * 150.00394 * 3 2 1 32 32 H 1.09009 * 109.56350 * 13.39412 * 9 8 6 33 33 H 1.09000 * 110.58112 * 252.25402 * 9 8 6 34 34 H 1.09004 * 110.36451 * 208.13883 * 12 10 9 35 35 H 1.09000 * 110.36448 * 330.44950 * 12 10 9 36 36 H 1.09008 * 110.36178 * 241.16335 * 13 12 10 37 37 H 1.08994 * 110.46381 * 118.88724 * 13 12 10 38 38 H 1.09000 * 109.75078 * 107.60730 * 16 8 6 39 39 H 1.09003 * 109.75164 * 346.87579 * 16 8 6 40 40 H 0.96995 * 120.00836 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5197 -1.1550 0.1013 6 6 1.4403 -2.4259 -0.1120 7 8 1.2845 -2.9445 -1.2008 8 7 0.9430 -3.0163 0.9929 9 6 0.2849 -4.3444 0.9153 10 6 0.8706 -5.2142 2.0416 11 1 0.4697 -6.2276 2.0277 12 6 2.4113 -5.1945 1.9209 13 6 2.8589 -3.9855 2.7683 14 6 1.5480 -3.3840 3.3235 15 1 1.6796 -2.9583 4.3183 16 6 1.0326 -2.3539 2.3040 17 7 0.5929 -4.5185 3.3213 18 6 -0.3297 -4.8476 4.2782 19 1 -0.7524 -5.8413 4.3018 20 6 -0.7217 -3.9042 5.2179 21 7 -0.3190 -2.6563 5.1053 22 14 -1.8210 -4.4058 6.6426 23 1 -1.1417 -5.4528 7.4472 24 1 -2.0927 -3.2230 7.4984 25 1 -3.1020 -4.9404 6.1149 26 1 -0.3633 0.0688 1.0253 27 1 -0.3634 0.8537 -0.5722 28 1 -0.3633 -0.9224 -0.4531 29 1 2.4422 1.6198 -1.0277 30 1 1.6714 2.0647 0.5139 31 1 3.2129 1.1748 0.5137 32 1 0.4976 -4.8012 -0.0513 33 1 -0.7925 -4.2466 1.0480 34 1 2.8349 -6.1157 2.3211 35 1 2.7086 -5.0598 0.8810 36 1 3.3762 -3.2561 2.1449 37 1 3.5033 -4.3103 3.5851 38 1 0.0473 -1.9984 2.6052 39 1 1.7257 -1.5146 2.2460 40 1 -0.5926 -1.9971 5.7621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029268277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = -45.569588 kcal Electronic energy + Delta-G solvation = -24011.128272 eV Core-core repulsion = 20548.024712 eV Total energy + Delta-G solvation = -3463.103560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.93441 -41.62518 -39.53338 -36.57807 -35.35091 -34.21792 -32.31856 -31.06573 -29.43674 -28.58017 -27.44613 -25.48691 -25.43227 -22.60166 -21.33739 -20.65026 -19.97386 -19.00550 -17.84925 -17.53464 -17.27883 -16.66055 -16.52188 -16.15280 -15.55670 -15.23988 -15.00610 -14.73683 -14.57030 -14.47337 -14.04402 -13.84469 -13.56159 -13.39804 -13.33902 -13.25035 -12.96340 -12.88852 -12.70504 -12.59219 -12.56340 -12.02956 -11.86801 -11.52448 -11.51225 -11.19160 -11.10049 -10.66042 -9.87071 -9.78263 -8.70619 -7.85076 -5.21592 0.46822 1.23863 1.52388 1.53399 1.58785 1.88122 2.52107 3.10437 3.35207 3.46297 3.56451 3.86394 4.05308 4.06390 4.18687 4.29450 4.32655 4.37194 4.47970 4.54674 4.62204 4.67853 4.77771 4.80816 4.87917 4.93829 4.97782 4.99490 5.02798 5.10109 5.22190 5.25073 5.31876 5.47266 5.52733 5.58217 5.75177 6.22127 6.34276 6.88766 7.08019 7.71804 8.52243 9.27014 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.006350 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.870904 B = 4408.584603 C = 4949.834497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.027 4.027 5 F -0.133 7.133 6 C 0.547 3.453 7 O -0.573 6.573 8 N -0.576 5.576 9 C 0.107 3.893 10 C 0.130 3.870 11 H 0.090 0.910 12 C -0.115 4.115 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.087 0.913 16 C 0.124 3.876 17 N -0.600 5.600 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.045 4.045 21 N -0.931 5.931 22 Si 0.969 3.031 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.282 1.282 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 5.572 -7.139 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.173 4.173 4 C -0.049 4.049 5 F -0.112 7.112 6 C 0.333 3.667 7 O -0.455 6.455 8 N -0.306 5.306 9 C -0.017 4.017 10 C 0.023 3.977 11 H 0.108 0.892 12 C -0.153 4.153 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.105 0.895 16 C 0.001 3.999 17 N -0.322 5.322 18 C -0.367 4.367 19 H 0.093 0.907 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.208 1.208 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.889 5.352 -7.443 9.959 hybrid contribution -0.452 -0.273 0.890 1.035 sum 3.437 5.079 -6.553 8.975 Atomic orbital electron populations 1.20861 0.89357 1.03422 1.03699 1.22837 0.97722 0.94387 0.95098 1.20899 0.99939 0.92285 1.04153 1.19097 0.77712 0.94263 1.13818 1.91454 1.28638 1.97061 1.94077 1.18619 0.79768 0.84278 0.84007 1.90743 1.61834 1.65294 1.27611 1.48602 1.54891 1.19459 1.07637 1.22596 0.96344 0.82563 1.00176 1.22147 0.94455 0.95587 0.85522 0.89171 1.22394 0.95556 0.98459 0.98940 1.22566 0.97840 0.97666 0.98820 1.21701 0.87088 0.88388 0.96909 0.89541 1.22288 1.01377 0.95279 0.81003 1.45281 1.39438 1.30252 1.17226 1.19208 1.15792 0.95796 1.05899 0.90691 1.25488 1.01103 0.95207 1.02248 1.69950 1.49497 1.01481 1.36856 0.85311 0.78877 0.76466 0.79467 1.21021 1.22161 1.20848 0.89777 0.87551 0.93703 0.88748 0.88475 0.91178 0.89786 0.92461 0.91071 0.92250 0.92411 0.92112 0.92036 0.90932 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.71 71.24 0.69 -2.20 16 2 C -0.10 -2.59 5.93 -17.60 -0.10 -2.69 16 3 C -0.12 -2.18 9.87 71.24 0.70 -1.48 16 4 C -0.03 -0.88 5.20 23.50 0.12 -0.76 16 5 F -0.13 -4.39 16.31 44.97 0.73 -3.65 16 6 C 0.55 20.73 5.53 86.62 0.48 21.21 16 7 O -0.57 -24.57 16.62 -4.05 -0.07 -24.64 16 8 N -0.58 -21.97 2.26 -815.85 -1.84 -23.82 16 9 C 0.11 4.08 6.00 86.31 0.52 4.60 16 10 C 0.13 5.05 4.27 45.48 0.19 5.24 16 11 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 12 C -0.11 -4.01 6.19 31.55 0.20 -3.82 16 13 C -0.13 -4.82 6.19 31.55 0.20 -4.63 16 14 C 0.17 7.23 3.10 45.45 0.14 7.37 16 15 H 0.09 4.30 6.52 -2.39 -0.02 4.28 16 16 C 0.12 4.97 5.68 86.53 0.49 5.46 16 17 N -0.60 -27.74 2.79 -636.87 -1.78 -29.52 16 18 C -0.24 -12.15 10.36 84.03 0.87 -11.28 16 19 H 0.08 3.73 7.84 -2.91 -0.02 3.71 16 20 C -0.05 -2.33 5.43 84.86 0.46 -1.87 16 21 N -0.93 -49.31 10.31 21.65 0.22 -49.08 16 22 Si 0.97 42.60 29.56 68.60 2.03 44.62 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.04 1.33 6.71 -2.39 -0.02 1.32 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 31 H 0.07 1.37 7.48 -2.39 -0.02 1.36 16 32 H 0.08 3.06 7.18 -2.38 -0.02 3.05 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.03 7.86 -2.39 -0.02 2.01 16 36 H 0.06 2.06 7.84 -2.38 -0.02 2.04 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.82 7.64 -2.39 -0.02 2.80 16 39 H 0.07 2.68 6.31 -2.39 -0.02 2.66 16 40 H 0.25 13.07 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -59.36 321.45 5.29 -54.07 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.03 Total: 16.85 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 4.96 Total: 15.17 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -3.40 Total: -102.42 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.73 Total: -3.65 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -59.36 5.29 -54.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029268277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.502 kcal (2) G-P(sol) polarization free energy of solvation -59.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds