Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99900 * 2 1 4 4 O 1.21612 * 119.99622 * 185.11438 * 3 2 1 5 5 C 1.47292 * 120.00003 * 5.11310 * 3 2 1 6 6 F 1.35098 * 120.00223 * 5.58542 * 5 3 2 7 7 C 1.33122 * 119.99453 * 185.58678 * 5 3 2 8 8 C 1.51449 * 126.34437 * 359.68276 * 7 5 3 9 9 C 1.54276 * 106.85114 * 180.24387 * 8 7 5 10 10 C 1.54989 * 103.65819 * 23.48800 * 9 8 7 11 11 C 1.51839 * 126.33841 * 180.02562 * 7 5 3 12 12 C 1.46505 * 119.99656 * 179.97438 * 2 1 3 13 13 C 1.53946 * 113.73983 * 42.43172 * 12 2 1 14 14 N 1.47814 * 86.03218 * 222.07947 * 13 12 2 15 15 C 1.36937 * 134.45414 * 204.64234 * 14 13 12 16 16 H 1.07997 * 120.00113 * 174.67628 * 15 14 13 17 17 C 1.38816 * 120.00041 * 354.66748 * 15 14 13 18 18 N 1.31621 * 119.99765 * 5.01553 * 17 15 14 19 19 Si 1.86804 * 119.99896 * 185.00676 * 17 15 14 20 20 H 1.48493 * 109.46810 * 95.00319 * 19 17 15 21 21 H 1.48495 * 109.46819 * 215.00388 * 19 17 15 22 22 H 1.48493 * 109.46910 * 335.00255 * 19 17 15 23 23 C 1.47576 * 91.05263 * 24.55198 * 14 13 12 24 24 H 1.08999 * 109.46972 * 175.05930 * 1 2 3 25 25 H 1.08997 * 109.46847 * 55.06346 * 1 2 3 26 26 H 1.08993 * 109.46970 * 295.06622 * 1 2 3 27 27 H 1.08995 * 109.98382 * 299.73121 * 8 7 5 28 28 H 1.09006 * 109.97859 * 61.03322 * 8 7 5 29 29 H 1.08993 * 110.79751 * 264.86140 * 9 8 7 30 30 H 1.08999 * 110.42574 * 141.93027 * 9 8 7 31 31 H 1.09004 * 110.82839 * 204.48554 * 10 9 8 32 32 H 1.08996 * 110.83540 * 80.91348 * 10 9 8 33 33 H 1.09006 * 110.43875 * 274.92300 * 11 7 5 34 34 H 1.09004 * 110.44347 * 37.31685 * 11 7 5 35 35 H 1.08997 * 112.93744 * 174.02235 * 12 2 1 36 36 H 1.09000 * 113.76840 * 336.34684 * 13 12 2 37 37 H 1.09007 * 113.76680 * 107.74604 * 13 12 2 38 38 H 0.97004 * 119.99635 * 179.97438 * 18 17 15 39 39 H 1.08993 * 113.76850 * 221.15023 * 23 14 13 40 40 H 1.09001 * 113.77251 * 89.75022 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1693 -0.0939 5 6 1.4068 2.4403 0.1137 6 9 0.0735 2.4357 0.3311 7 6 2.0591 3.5953 0.0021 8 6 3.5451 3.7678 -0.2342 9 6 3.8172 5.2856 -0.2819 10 6 2.6335 5.8947 0.5119 11 6 1.4522 4.9840 0.0954 12 6 2.1975 -1.2688 0.0006 13 6 1.6066 -2.3260 -0.9498 14 7 1.8509 -3.2937 0.1405 15 6 2.0498 -4.6475 0.1945 16 1 2.2967 -5.1200 1.1338 17 6 1.9339 -5.4126 -0.9579 18 7 1.7307 -4.8269 -2.1190 19 14 2.0666 -7.2734 -0.8609 20 1 0.7070 -7.8618 -0.7590 21 1 2.7376 -7.7861 -2.0824 22 1 2.8605 -7.6513 0.3357 23 6 1.7967 -2.2154 1.1465 24 1 -0.3633 -1.0238 -0.0885 25 1 -0.3633 0.5885 -0.8425 26 1 -0.3633 0.4354 0.9308 27 1 4.1072 3.3119 0.5808 28 1 3.8269 3.3108 -1.1829 29 1 3.8151 5.6470 -1.3101 30 1 4.7645 5.5177 0.2049 31 1 2.4537 6.9262 0.2089 32 1 2.8125 5.8305 1.5851 33 1 1.0568 5.2924 -0.8724 34 1 0.6670 5.0064 0.8511 35 1 3.2745 -1.1376 -0.1040 36 1 0.5508 -2.1740 -1.1740 37 1 2.2105 -2.5033 -1.8397 38 1 1.6501 -5.3615 -2.9244 39 1 2.5521 -2.3045 1.9272 40 1 0.7969 -2.0308 1.5395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042608410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -6.928746 kcal Electronic energy + Delta-G solvation = -22414.897142 eV Core-core repulsion = 18953.469174 eV Total energy + Delta-G solvation = -3461.427968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.91214 -39.85077 -38.39008 -37.35679 -34.40935 -32.01661 -31.33119 -29.02475 -27.84107 -26.81292 -25.55646 -24.84235 -23.16738 -21.23581 -20.74536 -18.72642 -18.64168 -17.31087 -16.82484 -16.43621 -16.31283 -15.84864 -15.46086 -14.92727 -14.44062 -14.32828 -13.83055 -13.57222 -13.48290 -13.02738 -12.65103 -12.53921 -12.34020 -11.93158 -11.76222 -11.62547 -11.48090 -11.36784 -11.32632 -11.22452 -10.89702 -10.83999 -10.72356 -10.29584 -10.07382 -9.60348 -9.55274 -8.96142 -8.81967 -8.13287 -6.92767 -5.81802 -3.14161 1.14655 3.10878 3.18247 3.38322 3.43422 3.45489 4.08482 4.17504 4.42307 4.45808 4.76840 4.93080 5.07454 5.15609 5.20987 5.33492 5.42899 5.43428 5.51568 5.52778 5.59450 5.72854 5.78068 5.81727 5.89904 5.93836 5.98895 6.05476 6.11422 6.17929 6.36592 6.43647 6.57566 6.71522 7.17629 7.29392 7.49574 7.67672 7.92423 8.25549 8.99759 9.65976 10.53095 11.35724 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042488 B = 0.003444 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.852959 B = 8128.531257 C = 8412.265526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.544 3.456 4 O -0.527 6.527 5 C -0.001 4.001 6 F -0.135 7.135 7 C -0.085 4.085 8 C -0.078 4.078 9 C -0.128 4.128 10 C -0.122 4.122 11 C -0.094 4.094 12 C 0.088 3.912 13 C 0.158 3.842 14 N -0.606 5.606 15 C -0.224 4.224 16 H 0.083 0.917 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 20.866 3.974 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.332 3.668 4 O -0.406 6.406 5 C -0.023 4.023 6 F -0.114 7.114 7 C -0.089 4.089 8 C -0.115 4.115 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.131 4.131 12 C -0.015 4.015 13 C 0.032 3.968 14 N -0.332 5.332 15 C -0.352 4.352 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.018 4.018 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.839 20.472 3.796 20.838 hybrid contribution -0.608 -1.133 0.031 1.286 sum -1.448 19.339 3.827 19.767 Atomic orbital electron populations 1.22051 0.79243 1.04012 1.01638 1.47975 1.07342 1.05964 1.70811 1.18211 0.87269 0.83348 0.78008 1.90790 1.12699 1.86506 1.50600 1.18997 0.77889 0.93942 1.11493 1.91457 1.30218 1.97051 1.92687 1.22956 0.98127 0.93299 0.94483 1.21130 0.90547 0.95809 1.04029 1.22477 0.98524 0.95003 1.00558 1.22516 0.94429 0.98563 1.00489 1.21466 0.98323 0.90735 1.02555 1.24157 0.98050 0.79438 0.99859 1.22668 0.97484 0.83196 0.93492 1.45688 1.83180 1.02445 1.01936 1.19002 1.41072 0.80019 0.95099 0.89965 1.24834 1.01864 0.98223 0.95355 1.69836 1.55008 1.34048 0.97587 0.86080 0.77571 0.84928 0.77089 1.21577 1.21632 1.20478 1.22981 0.98061 0.87423 0.93354 0.89575 0.91939 0.91911 0.89000 0.89443 0.91237 0.90993 0.90920 0.91021 0.89386 0.90369 0.86396 0.94771 0.90646 0.93520 0.93427 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 7.96 59.85 0.48 1.55 16 2 N -0.59 -10.19 3.10 -177.08 -0.55 -10.74 16 3 C 0.54 9.19 7.61 -12.58 -0.10 9.10 16 4 O -0.53 -9.96 13.62 5.27 0.07 -9.89 16 5 C 0.00 -0.01 7.19 -37.68 -0.27 -0.28 16 6 F -0.14 -1.78 13.41 2.25 0.03 -1.75 16 7 C -0.09 -1.02 6.16 -100.20 -0.62 -1.63 16 8 C -0.08 -0.88 4.82 -26.85 -0.13 -1.01 16 9 C -0.13 -1.04 6.88 -25.01 -0.17 -1.21 16 10 C -0.12 -0.90 6.94 -24.70 -0.17 -1.07 16 11 C -0.09 -0.83 6.44 -26.34 -0.17 -0.99 16 12 C 0.09 1.79 4.42 -70.15 -0.31 1.48 16 13 C 0.16 3.74 6.86 -2.84 -0.02 3.72 16 14 N -0.61 -15.67 3.70 -177.91 -0.66 -16.33 16 15 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -27.22 11.47 55.49 0.64 -26.58 16 19 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 2.29 8.42 -2.97 -0.03 2.26 16 24 H 0.09 1.35 5.70 -51.93 -0.30 1.05 16 25 H 0.06 0.83 7.41 -51.93 -0.38 0.45 16 26 H 0.06 0.82 7.09 -51.93 -0.37 0.45 16 27 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 28 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 2.55 7.18 -51.93 -0.37 2.17 16 36 H 0.03 0.80 6.27 -51.93 -0.33 0.48 16 37 H 0.08 2.00 7.30 -51.92 -0.38 1.62 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.73 7.27 -51.93 -0.38 0.35 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -31.23 322.80 -8.20 -39.43 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.81 Total: -1.26 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.76 Total: 5.16 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.57 Total: -53.65 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.23 -8.20 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042608410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.502 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds