Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99900 * 2 1 4 4 O 1.21612 * 119.99622 * 185.11438 * 3 2 1 5 5 C 1.47292 * 120.00003 * 5.11310 * 3 2 1 6 6 F 1.35098 * 120.00223 * 5.58542 * 5 3 2 7 7 C 1.33122 * 119.99453 * 185.58678 * 5 3 2 8 8 C 1.51449 * 126.34437 * 359.68276 * 7 5 3 9 9 C 1.54276 * 106.85114 * 180.24387 * 8 7 5 10 10 C 1.54989 * 103.65819 * 23.48800 * 9 8 7 11 11 C 1.51839 * 126.33841 * 180.02562 * 7 5 3 12 12 C 1.46505 * 119.99656 * 179.97438 * 2 1 3 13 13 C 1.53946 * 113.73983 * 42.43172 * 12 2 1 14 14 N 1.47814 * 86.03218 * 222.07947 * 13 12 2 15 15 C 1.36937 * 134.45414 * 204.64234 * 14 13 12 16 16 H 1.07997 * 120.00113 * 174.67628 * 15 14 13 17 17 C 1.38816 * 120.00041 * 354.66748 * 15 14 13 18 18 N 1.31621 * 119.99765 * 5.01553 * 17 15 14 19 19 Si 1.86804 * 119.99896 * 185.00676 * 17 15 14 20 20 H 1.48493 * 109.46810 * 95.00319 * 19 17 15 21 21 H 1.48495 * 109.46819 * 215.00388 * 19 17 15 22 22 H 1.48493 * 109.46910 * 335.00255 * 19 17 15 23 23 C 1.47576 * 91.05263 * 24.55198 * 14 13 12 24 24 H 1.08999 * 109.46972 * 175.05930 * 1 2 3 25 25 H 1.08997 * 109.46847 * 55.06346 * 1 2 3 26 26 H 1.08993 * 109.46970 * 295.06622 * 1 2 3 27 27 H 1.08995 * 109.98382 * 299.73121 * 8 7 5 28 28 H 1.09006 * 109.97859 * 61.03322 * 8 7 5 29 29 H 1.08993 * 110.79751 * 264.86140 * 9 8 7 30 30 H 1.08999 * 110.42574 * 141.93027 * 9 8 7 31 31 H 1.09004 * 110.82839 * 204.48554 * 10 9 8 32 32 H 1.08996 * 110.83540 * 80.91348 * 10 9 8 33 33 H 1.09006 * 110.43875 * 274.92300 * 11 7 5 34 34 H 1.09004 * 110.44347 * 37.31685 * 11 7 5 35 35 H 1.08997 * 112.93744 * 174.02235 * 12 2 1 36 36 H 1.09000 * 113.76840 * 336.34684 * 13 12 2 37 37 H 1.09007 * 113.76680 * 107.74604 * 13 12 2 38 38 H 0.97004 * 119.99635 * 179.97438 * 18 17 15 39 39 H 1.08993 * 113.76850 * 221.15023 * 23 14 13 40 40 H 1.09001 * 113.77251 * 89.75022 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1693 -0.0939 5 6 1.4068 2.4403 0.1137 6 9 0.0735 2.4357 0.3311 7 6 2.0591 3.5953 0.0021 8 6 3.5451 3.7678 -0.2342 9 6 3.8172 5.2856 -0.2819 10 6 2.6335 5.8947 0.5119 11 6 1.4522 4.9840 0.0954 12 6 2.1975 -1.2688 0.0006 13 6 1.6066 -2.3260 -0.9498 14 7 1.8509 -3.2937 0.1405 15 6 2.0498 -4.6475 0.1945 16 1 2.2967 -5.1200 1.1338 17 6 1.9339 -5.4126 -0.9579 18 7 1.7307 -4.8269 -2.1190 19 14 2.0666 -7.2734 -0.8609 20 1 0.7070 -7.8618 -0.7590 21 1 2.7376 -7.7861 -2.0824 22 1 2.8605 -7.6513 0.3357 23 6 1.7967 -2.2154 1.1465 24 1 -0.3633 -1.0238 -0.0885 25 1 -0.3633 0.5885 -0.8425 26 1 -0.3633 0.4354 0.9308 27 1 4.1072 3.3119 0.5808 28 1 3.8269 3.3108 -1.1829 29 1 3.8151 5.6470 -1.3101 30 1 4.7645 5.5177 0.2049 31 1 2.4537 6.9262 0.2089 32 1 2.8125 5.8305 1.5851 33 1 1.0568 5.2924 -0.8724 34 1 0.6670 5.0064 0.8511 35 1 3.2745 -1.1376 -0.1040 36 1 0.5508 -2.1740 -1.1740 37 1 2.2105 -2.5033 -1.8397 38 1 1.6501 -5.3615 -2.9244 39 1 2.5521 -2.3045 1.9272 40 1 0.7969 -2.0308 1.5395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042608410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -25.220763 kcal Electronic energy + Delta-G solvation = -22415.690343 eV Core-core repulsion = 18953.469174 eV Total energy + Delta-G solvation = -3462.221169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92460 -41.28554 -39.67387 -38.57764 -35.94544 -34.03390 -32.29922 -29.83328 -29.68646 -28.08365 -26.81332 -26.67580 -24.77740 -22.48731 -21.61705 -20.35634 -19.72062 -18.90778 -18.47066 -17.65964 -17.39640 -16.98691 -16.94571 -16.25982 -15.83694 -15.75095 -15.55972 -14.68954 -14.58985 -14.25274 -13.97908 -13.72963 -13.53746 -13.34370 -13.21153 -13.19855 -12.92942 -12.83478 -12.57838 -12.45997 -12.13662 -12.02976 -11.98328 -11.93256 -11.58603 -11.46970 -10.90646 -10.89516 -10.05532 -9.53218 -8.98970 -7.96098 -5.30395 0.06927 1.45091 1.47074 1.56423 1.77214 1.90762 2.46065 2.98270 3.20765 3.24588 3.40261 3.70872 3.76688 4.00168 4.14588 4.15983 4.25917 4.30009 4.39397 4.46554 4.58451 4.65635 4.69852 4.77434 4.81814 4.88628 4.94412 5.03648 5.06350 5.11802 5.16037 5.17331 5.23305 5.37556 5.43900 5.45624 5.65435 5.84648 6.30343 6.85384 6.90310 7.54104 8.47435 9.21430 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042488 B = 0.003444 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.852959 B = 8128.531257 C = 8412.265526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.595 5.595 3 C 0.541 3.459 4 O -0.556 6.556 5 C -0.025 4.025 6 F -0.130 7.130 7 C -0.064 4.064 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.094 4.094 12 C 0.114 3.886 13 C 0.161 3.839 14 N -0.635 5.635 15 C -0.238 4.238 16 H 0.088 0.912 17 C -0.064 4.064 18 N -0.952 5.952 19 Si 0.983 3.017 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.116 3.884 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.250 0.750 39 H 0.056 0.944 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 22.874 5.048 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.326 5.326 3 C 0.330 3.670 4 O -0.437 6.437 5 C -0.047 4.047 6 F -0.109 7.109 7 C -0.067 4.067 8 C -0.122 4.122 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.131 4.131 12 C 0.009 3.991 13 C 0.034 3.966 14 N -0.362 5.362 15 C -0.366 4.366 16 H 0.106 0.894 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.810 3.190 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.191 1.191 23 C -0.010 4.010 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.510 22.519 4.904 23.096 hybrid contribution -0.360 -1.633 -0.295 1.698 sum -1.870 20.886 4.609 21.470 Atomic orbital electron populations 1.22164 0.77431 1.03671 1.03334 1.47929 1.08334 1.05043 1.71257 1.18687 0.87177 0.84089 0.77026 1.90773 1.14014 1.87046 1.51823 1.18531 0.78297 0.92843 1.15032 1.91459 1.29525 1.96912 1.93030 1.23420 0.98518 0.94332 0.90452 1.21207 0.90161 0.98328 1.02504 1.22477 0.99586 0.92197 1.01716 1.22542 0.92898 0.99424 1.00501 1.21636 0.99084 0.88569 1.03780 1.23445 0.97104 0.80499 0.98010 1.22532 0.97081 0.84433 0.92512 1.45990 1.83507 1.02672 1.04050 1.19405 1.40403 0.81457 0.95360 0.89445 1.25705 1.02224 1.02806 0.95035 1.70024 1.56501 1.35415 0.98042 0.84999 0.77558 0.79281 0.77121 1.21180 1.22077 1.19062 1.23070 0.99257 0.85628 0.92996 0.90770 0.90569 0.89881 0.90540 0.91047 0.90102 0.89991 0.88444 0.90811 0.87716 0.89458 0.88083 0.94519 0.94354 0.94068 0.92571 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 7.96 127.77 1.02 3.16 16 2 N -0.59 -20.51 3.10 -832.39 -2.58 -23.08 16 3 C 0.54 18.27 7.61 86.62 0.66 18.93 16 4 O -0.56 -21.50 13.62 -4.07 -0.06 -21.56 16 5 C -0.02 -0.67 7.19 23.50 0.17 -0.50 16 6 F -0.13 -3.17 13.41 44.97 0.60 -2.57 16 7 C -0.06 -1.41 6.16 -17.00 -0.10 -1.52 16 8 C -0.09 -1.84 4.82 30.52 0.15 -1.70 16 9 C -0.12 -1.67 6.88 31.71 0.22 -1.45 16 10 C -0.12 -1.28 6.94 31.91 0.22 -1.05 16 11 C -0.09 -1.34 6.44 30.85 0.20 -1.14 16 12 C 0.11 4.71 4.42 46.75 0.21 4.92 16 13 C 0.16 7.89 6.86 86.44 0.59 8.48 16 14 N -0.64 -33.40 3.70 -716.78 -2.65 -36.05 16 15 C -0.24 -13.56 10.70 84.03 0.90 -12.67 16 16 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 17 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 18 N -0.95 -58.04 11.47 21.65 0.25 -57.79 16 19 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 C 0.12 4.87 8.42 86.49 0.73 5.60 16 24 H 0.07 2.28 5.70 -2.39 -0.01 2.27 16 25 H 0.08 1.94 7.41 -2.39 -0.02 1.92 16 26 H 0.08 2.02 7.09 -2.39 -0.02 2.00 16 27 H 0.08 1.92 7.56 -2.39 -0.02 1.90 16 28 H 0.07 1.79 7.81 -2.38 -0.02 1.77 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 4.54 7.18 -2.39 -0.02 4.52 16 36 H 0.04 1.78 6.27 -2.39 -0.01 1.76 16 37 H 0.04 2.14 7.30 -2.38 -0.02 2.13 16 38 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.21 7.27 -2.39 -0.02 2.19 16 Total: -1.00 -68.68 322.80 4.05 -64.62 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.04 Total: 10.57 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.42 Total: 17.83 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -4.98 Total: -116.92 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.60 Total: -2.57 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -68.68 4.05 -64.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042608410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.404 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds