Wall clock time and date at job start Tue Mar 31 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50694 * 119.99674 * 2 1 4 4 C 1.33113 * 119.99831 * 179.97438 * 2 1 3 5 5 F 1.35100 * 119.99462 * 172.86398 * 4 2 1 6 6 C 1.47299 * 120.00134 * 352.86361 * 4 2 1 7 7 O 1.21606 * 120.00216 * 353.94181 * 6 4 2 8 8 N 1.34773 * 119.99847 * 173.94744 * 6 4 2 9 9 C 1.47389 * 135.85558 * 359.62691 * 8 6 4 10 10 C 1.52069 * 87.41469 * 154.38878 * 9 8 6 11 11 C 1.47396 * 135.85497 * 179.97438 * 8 6 4 12 12 C 1.53516 * 117.21878 * 267.28375 * 10 9 8 13 13 C 1.54629 * 102.70220 * 262.92840 * 12 10 9 14 14 N 1.47147 * 107.37544 * 339.38411 * 13 12 10 15 15 C 1.36937 * 125.57884 * 179.12491 * 14 13 12 16 16 H 1.08005 * 120.00253 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00137 * 359.97235 * 15 14 13 18 18 N 1.31620 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00391 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46939 * 59.99521 * 19 17 15 21 21 H 1.48496 * 109.47467 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46958 * 300.00188 * 19 17 15 23 23 C 1.47748 * 108.84185 * 359.08384 * 14 13 12 24 24 H 1.09003 * 109.47233 * 264.38477 * 1 2 3 25 25 H 1.09005 * 109.47203 * 24.38452 * 1 2 3 26 26 H 1.09001 * 109.47123 * 144.38399 * 1 2 3 27 27 H 1.08999 * 109.47085 * 240.00001 * 3 2 1 28 28 H 1.09002 * 109.47470 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47417 * 119.99870 * 3 2 1 30 30 H 1.08994 * 113.54839 * 269.00477 * 9 8 6 31 31 H 1.09004 * 113.54285 * 39.68161 * 9 8 6 32 32 H 1.09004 * 113.54141 * 320.33075 * 11 8 6 33 33 H 1.09003 * 113.54079 * 90.99972 * 11 8 6 34 34 H 1.09007 * 110.75923 * 21.23152 * 12 10 9 35 35 H 1.08996 * 110.76813 * 144.62193 * 12 10 9 36 36 H 1.09009 * 109.86607 * 98.82840 * 13 12 10 37 37 H 1.08991 * 109.86522 * 219.79999 * 13 12 10 38 38 H 0.97002 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.40664 * 263.50934 * 23 14 13 40 40 H 1.09000 * 110.40718 * 141.08049 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1725 -1.1528 0.0005 5 9 3.5157 -1.1573 -0.1448 6 6 1.4446 -2.4234 0.1596 7 8 0.2526 -2.4153 0.4003 8 7 2.0996 -3.5950 0.0384 9 6 3.4861 -4.0072 -0.2446 10 6 3.1835 -5.2949 0.5055 11 6 1.7399 -5.0218 0.1250 12 6 3.5142 -5.3289 2.0043 13 6 4.8986 -6.0171 2.0314 14 7 5.0469 -6.7559 0.7675 15 6 6.1438 -7.4866 0.3957 16 1 6.1562 -7.9955 -0.5568 17 6 7.2398 -7.5733 1.2431 18 7 7.2250 -6.9527 2.4038 19 14 8.7358 -8.5706 0.7364 20 1 9.2976 -8.0159 -0.5214 21 1 9.7616 -8.5038 1.8080 22 1 8.3376 -9.9847 0.5191 23 6 3.8184 -6.5811 -0.0343 24 1 -0.3634 -0.1006 1.0228 25 1 -0.3634 0.9360 -0.4243 26 1 -0.3633 -0.8354 -0.5985 27 1 2.8870 1.3629 -0.8900 28 1 1.5521 2.1336 -0.0005 29 1 2.8871 1.3629 0.8900 30 1 3.6878 -4.1581 -1.3050 31 1 4.2343 -3.3827 0.2437 32 1 1.0300 -5.2442 0.9217 33 1 1.4521 -5.4571 -0.8320 34 1 3.5768 -4.3187 2.4091 35 1 2.7781 -5.9198 2.5492 36 1 5.6841 -5.2660 2.1157 37 1 4.9532 -6.7062 2.8741 38 1 7.9911 -7.0130 2.9958 39 1 3.1462 -7.4268 0.1109 40 1 4.0662 -6.4685 -1.0898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072623286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:32 Heat of formation + Delta-G solvation = 3.858646 kcal Electronic energy + Delta-G solvation = -22634.024207 eV Core-core repulsion = 19173.064015 eV Total energy + Delta-G solvation = -3460.960191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.85395 -40.66011 -38.75492 -35.87866 -35.07803 -32.24008 -29.94889 -28.92445 -28.12145 -27.33241 -26.01318 -25.54803 -23.71918 -20.94449 -20.26939 -18.85606 -18.39286 -17.39797 -16.73612 -16.25477 -16.14469 -15.47033 -15.07404 -14.86371 -14.47334 -13.91199 -13.83105 -13.56389 -13.47223 -13.16460 -12.69420 -12.57903 -12.45376 -12.41753 -12.18839 -11.95679 -11.84354 -11.72204 -11.00302 -10.91545 -10.65752 -10.41849 -10.20547 -10.13476 -9.85620 -9.66887 -9.52148 -9.07419 -8.60309 -8.51484 -6.84939 -5.71798 -3.05743 1.02137 2.75221 3.01598 3.40466 3.44838 3.46115 4.02297 4.43358 4.48082 4.62406 4.66406 4.95186 5.04955 5.21010 5.26485 5.35543 5.48830 5.50028 5.58715 5.62751 5.64846 5.69452 5.72014 5.82342 5.84622 5.93500 6.12005 6.15211 6.22029 6.39478 6.46349 6.51515 6.65324 6.69235 7.54469 7.60813 7.70258 7.81686 8.02507 8.24082 9.20628 9.80748 10.46301 11.39686 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003922 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.791504 B = 7137.934750 C = 7598.898469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.014 4.014 5 F -0.134 7.134 6 C 0.570 3.430 7 O -0.531 6.531 8 N -0.635 5.635 9 C 0.120 3.880 10 C -0.106 4.106 11 C 0.121 3.879 12 C -0.117 4.117 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.154 3.846 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.253 0.747 39 H 0.027 0.973 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 12.604 -4.964 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.178 4.178 4 C -0.036 4.036 5 F -0.113 7.113 6 C 0.361 3.639 7 O -0.411 6.411 8 N -0.369 5.369 9 C -0.002 4.002 10 C -0.108 4.108 11 C -0.001 4.001 12 C -0.155 4.155 13 C 0.055 3.945 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.028 3.972 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.817 12.736 -4.716 18.002 hybrid contribution 1.234 -0.488 -0.263 1.353 sum -10.582 12.247 -4.979 16.934 Atomic orbital electron populations 1.21014 0.88955 1.02794 1.03897 1.22674 0.97965 0.93552 0.94354 1.20891 1.00211 0.93441 1.03275 1.19381 0.77644 0.94157 1.12411 1.91486 1.29343 1.97080 1.93352 1.17728 0.86093 0.82026 0.78073 1.90784 1.13781 1.86156 1.50339 1.49739 1.13331 1.05221 1.68562 1.22991 0.82828 0.93869 1.00509 1.22206 0.94026 0.96271 0.98303 1.22825 0.97687 0.77894 1.01684 1.22474 1.00536 1.00593 0.91947 1.21217 0.89999 0.94370 0.88898 1.44527 1.13366 1.58550 1.16665 1.19003 0.91875 1.23178 1.01756 0.90427 1.24795 0.98384 1.00524 0.96620 1.69951 1.30447 1.46610 1.09894 0.86202 0.82455 0.79792 0.77307 1.21170 1.21630 1.21184 1.21129 0.89139 0.92025 0.94953 0.90004 0.92017 0.89196 0.90479 0.90724 0.90333 0.89363 0.89565 0.90192 0.89489 0.92132 0.91743 0.93502 0.93759 0.93692 0.95509 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.44 36.01 0.30 -0.84 16 2 C -0.08 -0.93 6.11 -101.14 -0.62 -1.55 16 3 C -0.12 -1.04 9.63 36.00 0.35 -0.69 16 4 C -0.01 -0.19 7.33 -37.68 -0.28 -0.47 16 5 F -0.13 -1.95 14.85 2.25 0.03 -1.91 16 6 C 0.57 8.95 7.87 -12.58 -0.10 8.85 16 7 O -0.53 -9.01 14.07 5.27 0.07 -8.94 16 8 N -0.64 -9.77 3.70 -187.07 -0.69 -10.46 16 9 C 0.12 1.87 7.06 -7.34 -0.05 1.82 16 10 C -0.11 -1.76 1.06 -155.23 -0.16 -1.93 16 11 C 0.12 1.73 8.02 -7.49 -0.06 1.67 16 12 C -0.12 -2.16 6.40 -25.61 -0.16 -2.32 16 13 C 0.18 4.25 5.39 -2.83 -0.02 4.24 16 14 N -0.60 -14.86 3.41 -170.54 -0.58 -15.44 16 15 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 16 H 0.08 2.02 7.83 -52.48 -0.41 1.60 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.68 10.30 55.49 0.57 -26.11 16 19 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.15 2.96 6.70 -3.22 -0.02 2.94 16 24 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 25 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 26 H 0.09 1.10 6.15 -51.93 -0.32 0.78 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.26 8.06 -51.93 -0.42 0.85 16 31 H 0.09 1.44 7.29 -51.93 -0.38 1.06 16 32 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.08 8.07 -51.92 -0.42 0.66 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.23 7.39 -51.92 -0.38 0.85 16 37 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -30.62 328.26 -7.78 -38.40 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.04 Total: -2.28 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.07 Total: 5.05 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.70 Total: -52.01 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.62 -7.78 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072623286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.259 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds